BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38720.1 Length=1928 Score E Sequences producing significant alignments: (Bits) Value Ahg901794 jgi|Araly1|901794|Al_scaffold_0004_2444 2021 0.0 > Ahg901794 jgi|Araly1|901794|Al_scaffold_0004_2444 Length=1653 Score = 2021 bits (1094), Expect = 0.0 Identities = 1216/1275 (95%), Gaps = 7/1275 (1%) Strand=Plus/Plus Query 1 ATGTCTCCGTCTTCAACCACTACTTGCACTTCCCTTCTTGAAGAGTTGCAGATGATATGG 60 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGTCTCCGTCTTCAACCACCACTTGCACTTCCCTTCTTGAAGAGTTGCAGATAATATGG 60 Query 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120 Query 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTTCAGAGCTGAGTTACAG 180 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTACAGAGCTGAGTTACAG 180 Query 181 CGATCATTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGATCCTTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240 Query 241 GTTTCGTTTGCCAAGAAGAAAGAAGGCTCTTTGAAGGAGCAGATTTCCAG-TGTAAAGCC 299 ||||||||| ||||||| | |||||||||||||||||||| || || | ||||||||| Sbjct 241 GTTTCGTTTCCCAAGAA-A--GAAGGCTCTTTGAAGGAGCAAATATCT-GCTGTAAAGCC 296 Query 300 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACT 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACA 356 Query 360 GAATCAAATAGCAGAGATCACGTCTAACATAGCAGGGAATGATTATACTGTTAGTTCTGG 419 || |||||||| ||||||| | ||||||||||| |||||||||||||||||| ||||||| Sbjct 357 GACTCAAATAGAAGAGATCTCTTCTAACATAGCGGGGAATGATTATACTGTTTGTTCTGG 416 Query 420 TTCAGAAGTTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGCA-GATC 478 | | ||| ||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 417 TCCTGAAATTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGAACG-TC 475 Query 479 TGCAGGATCTTCGAAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 538 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TGCAGGATCTTCGCAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 535 Query 539 CTGTCCATGAGCTGTCAGAGATTCTGTCTTTTGATTTCTCCAAGGCCCTGAATAGTGTCC 598 ||||||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||| Sbjct 536 CTGTCCATGAGCTGTCAGAGATTATGTCATTTGATTTCTCCAAGGCCTTGAATAATGTCC 595 Query 599 ATAGCAGCTTGACTGAGTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 658 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 ATAGCAGCTTGGCTGACTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 655 Query 659 CTAGGTTCACAGAACTTGTAAAGTCTCTGAAGGCGGAGAAACATGAGAGGCTGCTTAAGC 718 |||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 656 CTAGATTAACAGAACTTGTAAAGTCTCTCAAGGAGGAGAAACATGAGAGGCTGCTTAAGC 715 Query 719 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGGATG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 716 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGCATG 775 Query 779 AGAGGAGAAGATTTGACCATTGCAGCAGCTTACTTTCTAGTCTACCTGATGATGCCTTGA 838 ||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||| ||| Sbjct 776 AGAGGAGAAGATTTGACCATTGCAGTAGCTTACTTTCTGGTCCACCTGATGTTGCCATGA 835 Query 839 AAAAAGGATGCCTCAGCCTAGACATTATCCGAGAGGCCGAAGATGAAGTGAGAAGACTGA 898 |||||||||||||| | || ||||||||||||||||||||||||||||||| |||||| | Sbjct 836 AAAAAGGATGCCTCGGTCTGGACATTATCCGAGAGGCCGAAGATGAAGTGAAAAGACTCA 895 Query 899 ATTCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCAGTGTGAACTAGAAG 958 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 896 ATGCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCTGTGTGAACTAGAAG 955 Query 959 AGATCTGCAGAGGGAATCATATGGATATCAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1018 ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 956 AGATCTGTAGAGGGAATCATATGGACATTAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1015 Query 1019 AACTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTGCAAGCATAGATGGTCAGA 1078 | ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 1016 ACCTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTACAAGAATAGATGGTCAGA 1075 Query 1079 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATATTGGACAAAGTTGATAAGT 1138 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1076 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATTTTGGACAAAGTTGATAAGT 1135 Query 1139 GGAGACACGCAAAGGAGGAAGAAACATGGCTTGATGATTATGAAAAGGATGAAAATCGCT 1198 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1136 GGAGACATGCAAAGGAGGAAGAAACATGGCTTGATGACTATGAAAAGGATGAAAATCGCT 1195 Query 1199 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1255 Query 1259 TCAGCAAAATTCCTG 1273 ||||||||||||||| Sbjct 1256 TCAGCAAAATTCCTG 1270 Score = 628 bits (340), Expect = 3e-179 Identities = 366/379 (97%), Gaps = 0/379 (0%) Strand=Plus/Plus Query 1384 ATGGTGGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGGGTCCCCTTC 1443 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1273 ATGGTCGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGAGTCCCCTTC 1332 Query 1444 TTATGCGATAAGCAACCGTTATTACAAACACTAGAAGATGACATTGTTATCCGTGCTCAA 1503 ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1333 TTATGTGATAAGCAACCGTTATTACAAACTCTAGAAGAAGACATTGTTATCCGTGCTCAA 1392 Query 1504 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1393 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1452 Query 1564 GAGAAAGAAGCAAAGTATGGTTCCAAGTCTGCAAAGAAGAAGCCATTGGGACAGAGTCTT 1623 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1453 GAGAAAGAAGCAAAGTATGGTTCAAAGTCTGCAAAGAAGAAGCAATTGGGACAGAGTCTG 1512 Query 1624 AACACAGACAATGTGACTAAAACTCCCATTGGTCGGCGCATTGGAAATACACCTGGACGT 1683 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1513 AACACAGACAATGTGACTAAAACTCCCATTGGTCGACGCATTGGGAATACACCTGGACGT 1572 Query 1684 TCTGTTACTTCTGGTGGCAAAGATTATAGAGGCAATGCGGTGATACCATTGAACTATGTT 1743 |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1573 TCTGCTACTTCTGGCGGCAAAGATTATAGAGGCAATGCCGTGATACCATTGAACTATGTT 1632 Query 1744 GCTCTTCAGAAAGACGATT 1762 ||||||||||||||||||| Sbjct 1633 GCTCTTCAGAAAGACGATT 1651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72447645990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5