BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38720.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901794 jgi|Araly1|901794|Al_scaffold_0004_2444 2021 0.0
> Ahg901794 jgi|Araly1|901794|Al_scaffold_0004_2444
Length=1653
Score = 2021 bits (1094), Expect = 0.0
Identities = 1216/1275 (95%), Gaps = 7/1275 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCCGTCTTCAACCACTACTTGCACTTCCCTTCTTGAAGAGTTGCAGATGATATGG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCCGTCTTCAACCACCACTTGCACTTCCCTTCTTGAAGAGTTGCAGATAATATGG 60
Query 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGAGATTGGTGAAAGTTACAATGAAAGAGATAAGATGCTGCTAGAACTTGAGCAGGAA 120
Query 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTTCAGAGCTGAGTTACAG 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TGTCTGGATATATACAATAAGAAGGTTGAGAAAACTCGTAAGTACAGAGCTGAGTTACAG 180
Query 181 CGATCATTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATCCTTAGCTCAAGCTGAAGCTGAGATTGCCAGCCTCATGTCTGCGCTTGGTGAAAAA 240
Query 241 GTTTCGTTTGCCAAGAAGAAAGAAGGCTCTTTGAAGGAGCAGATTTCCAG-TGTAAAGCC 299
||||||||| ||||||| | |||||||||||||||||||| || || | |||||||||
Sbjct 241 GTTTCGTTTCCCAAGAA-A--GAAGGCTCTTTGAAGGAGCAAATATCT-GCTGTAAAGCC 296
Query 300 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGTACTGGAAGATCTACTGATGAAAAAGGATCGAAGAAGGAAAGAGCTCTCTGAGACACA 356
Query 360 GAATCAAATAGCAGAGATCACGTCTAACATAGCAGGGAATGATTATACTGTTAGTTCTGG 419
|| |||||||| ||||||| | ||||||||||| |||||||||||||||||| |||||||
Sbjct 357 GACTCAAATAGAAGAGATCTCTTCTAACATAGCGGGGAATGATTATACTGTTTGTTCTGG 416
Query 420 TTCAGAAGTTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGCA-GATC 478
| | ||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 417 TCCTGAAATTGATGAAAGTGACTTGACACAAAGAAAGTTGGATGAACTTAGAGAACG-TC 475
Query 479 TGCAGGATCTTCGAAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGCAGGATCTTCGCAATGAAAAGGCTGTTCGACTGCAGAAAGTAAACTCTTATATCAGTG 535
Query 539 CTGTCCATGAGCTGTCAGAGATTCTGTCTTTTGATTTCTCCAAGGCCCTGAATAGTGTCC 598
||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||
Sbjct 536 CTGTCCATGAGCTGTCAGAGATTATGTCATTTGATTTCTCCAAGGCCTTGAATAATGTCC 595
Query 599 ATAGCAGCTTGACTGAGTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 658
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATAGCAGCTTGGCTGACTTTTCAAAGACTCATTCGAAAAGCATTAGTAATGATACTCTTG 655
Query 659 CTAGGTTCACAGAACTTGTAAAGTCTCTGAAGGCGGAGAAACATGAGAGGCTGCTTAAGC 718
|||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 656 CTAGATTAACAGAACTTGTAAAGTCTCTCAAGGAGGAGAAACATGAGAGGCTGCTTAAGC 715
Query 719 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGGATG 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 716 TACAAGGTTTGGGAAGAAGCATGCAAGAGCTGTGGAACCTAATGGAAACACCTATGCATG 775
Query 779 AGAGGAGAAGATTTGACCATTGCAGCAGCTTACTTTCTAGTCTACCTGATGATGCCTTGA 838
||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||| |||
Sbjct 776 AGAGGAGAAGATTTGACCATTGCAGTAGCTTACTTTCTGGTCCACCTGATGTTGCCATGA 835
Query 839 AAAAAGGATGCCTCAGCCTAGACATTATCCGAGAGGCCGAAGATGAAGTGAGAAGACTGA 898
|||||||||||||| | || ||||||||||||||||||||||||||||||| |||||| |
Sbjct 836 AAAAAGGATGCCTCGGTCTGGACATTATCCGAGAGGCCGAAGATGAAGTGAAAAGACTCA 895
Query 899 ATTCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCAGTGTGAACTAGAAG 958
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 ATGCCCTGAAGTCCAGCAAAATGAAGGAATTGGTGTTTAAGAGGCTGTGTGAACTAGAAG 955
Query 959 AGATCTGCAGAGGGAATCATATGGATATCAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1018
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 956 AGATCTGTAGAGGGAATCATATGGACATTAATAGTGATGCTGCAAGAAAGAGTCTTGTCG 1015
Query 1019 AACTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTGCAAGCATAGATGGTCAGA 1078
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1016 ACCTCATTGAATCTGGTGATGGTGATCTGTCTGATATTCTTACAAGAATAGATGGTCAGA 1075
Query 1079 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATATTGGACAAAGTTGATAAGT 1138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1076 TCGAGAAGGCAAGAGAAGAAGCTTTAAGCAGAAAGGAAATTTTGGACAAAGTTGATAAGT 1135
Query 1139 GGAGACACGCAAAGGAGGAAGAAACATGGCTTGATGATTATGAAAAGGATGAAAATCGCT 1198
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1136 GGAGACATGCAAAGGAGGAAGAAACATGGCTTGATGACTATGAAAAGGATGAAAATCGCT 1195
Query 1199 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCAGTGCTGTGAGAGGAGCACACAAAAATCTAAAACGGGCAGAAAAAGCTAGGAGCCTTA 1255
Query 1259 TCAGCAAAATTCCTG 1273
|||||||||||||||
Sbjct 1256 TCAGCAAAATTCCTG 1270
Score = 628 bits (340), Expect = 3e-179
Identities = 366/379 (97%), Gaps = 0/379 (0%)
Strand=Plus/Plus
Query 1384 ATGGTGGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGGGTCCCCTTC 1443
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1273 ATGGTCGATGTTCTGACCACGAAAGTGAAGGCCTGGGAGAAAGAAAGAGGAGTCCCCTTC 1332
Query 1444 TTATGCGATAAGCAACCGTTATTACAAACACTAGAAGATGACATTGTTATCCGTGCTCAA 1503
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1333 TTATGTGATAAGCAACCGTTATTACAAACTCTAGAAGAAGACATTGTTATCCGTGCTCAA 1392
Query 1504 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGAGAAGAGGAAAAGCGTCAATTCCGAGAGCAGAAACGACTACAAGGTCAGCTTGCTACA 1452
Query 1564 GAGAAAGAAGCAAAGTATGGTTCCAAGTCTGCAAAGAAGAAGCCATTGGGACAGAGTCTT 1623
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1453 GAGAAAGAAGCAAAGTATGGTTCAAAGTCTGCAAAGAAGAAGCAATTGGGACAGAGTCTG 1512
Query 1624 AACACAGACAATGTGACTAAAACTCCCATTGGTCGGCGCATTGGAAATACACCTGGACGT 1683
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1513 AACACAGACAATGTGACTAAAACTCCCATTGGTCGACGCATTGGGAATACACCTGGACGT 1572
Query 1684 TCTGTTACTTCTGGTGGCAAAGATTATAGAGGCAATGCGGTGATACCATTGAACTATGTT 1743
|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1573 TCTGCTACTTCTGGCGGCAAAGATTATAGAGGCAATGCCGTGATACCATTGAACTATGTT 1632
Query 1744 GCTCTTCAGAAAGACGATT 1762
|||||||||||||||||||
Sbjct 1633 GCTCTTCAGAAAGACGATT 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5