BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38730.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482885 jgi|Araly1|482885|fgenesh2_kg.4__1945__AT2G38730.1 1182 0.0
> Ahg482885 jgi|Araly1|482885|fgenesh2_kg.4__1945__AT2G38730.1
Length=762
Score = 1182 bits (640), Expect = 0.0
Identities = 722/762 (95%), Gaps = 3/762 (0%)
Strand=Plus/Plus
Query 37 GAGAGATCAATCAAAGATTTGAAGTTCCGATGAATTCAGGAGGTGGAATCGTTGCTGCAG 96
|||||||||| | | |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 GAGAGATCAAACGACGATTTGAAGTTCCGATGAATTCCGGAGGAGGAATCGTTGCTGCAG 60
Query 97 CAGCTCCTTCAAGCGGCGGTGGTAATGTTGAATGGCATGTCCGACCACCGAACCCTAAAA 156
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 61 CAGCTCCTTCAAGCGGAGGTGGTAACGTTGAATGGCACGTCCGACCACCGAACCCTAAAA 120
Query 157 ACCCAGTTGTCTTCTTCGACGTCTCTATTGGTGGTATCCCCGCCGGTCGTATCAAGATGG 216
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ACCCAGTCGTCTTCTTCGACGTCTCTATTGGTGGCATCCCCGCCGGTCGTATCAAGATGG 180
Query 217 AGCTCTTCGCCGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTG 276
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCTTCGCTGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTG 240
Query 277 AACTCAGAAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCA 336
||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 241 AACACAGAAAAGCTGGAAAGCCTCTTGGTTACAAAGAGTGTCAGTTTCACAGGGTCATCA 300
Query 337 AAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGAATGATGGTAGTGGATGCATGTCAA 396
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 301 AGGATTTTATGGTTCAAAGTGGTGATTTTCTAAAGAATGATGGTAGTGGATGCGTGTCAA 360
Query 397 TCTACGGCCACAAGTTTGAGGATGAGAATTTTACTGCTAAACATACTGGACCAGGATTGC 456
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 361 TCTACGGCCACAAGTTTGAGGATGAAAATTTTACTGCCAAACATACTGGGCCAGGATTGC 420
Query 457 TCTCCATGGCAAATAGTGGGCCAAACACAAATGGGTGCCAGTTCTTCATCACTTGTGCAA 516
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTATGGCAAACAGTGGGCCAAACACAAATGGGTGCCAGTTCTTCATCACTTGTGCAA 480
Query 517 AATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTTGGAGATGGTTTGT 576
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 481 AATGCGACTGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTTGGGGATGGTTTAT 540
Query 577 TGGTTATGCGGAAGATTGAGAACGTGGCTATTGGACCCAATAACCGGCCTAAACTTGCGG 636
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TGGTGATGCGGAAGATTGAGAACGTGGCTATTGGACCCAATAACCGGCCTAAGCTTGCGG 600
Query 637 TTGTAATTACTGAGTGTGGGGAGATGTGAAATGTTTTCGAATGTTATGAGAGCCCATAGC 696
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 601 TTGTAATTACAGAGTGTGGGGAGATGTGAAATGTTTTAGAATGTAATGAGAGCCCAAAGC 660
Query 697 TTATTAGTTTTAAACTTAGGCATTGTGACAGAAGCCAAATCCCATTGTGGGTTATCTAAA 756
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 661 TTATTAGTTTTAAACTTAGGCATTGTGACAGAAGCCAAATCCCATTGTTGGTTATCAAAA 720
Query 757 A--T-GTCAACTTCTTACGGCTTACAAATACTACAGTTGAGG 795
| | |||||||| |||||| ||||||||||||||||| |||
Sbjct 721 ACGTTGTCAACTTTTTACGGTTTACAAATACTACAGTTAAGG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5