BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38740.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934625 jgi|Araly1|934625|scaffold_402613.1 1273 0.0
Ahg933654 jgi|Araly1|933654|scaffold_401642.1 627 7e-179
Ahg920276 jgi|Araly1|920276|scaffold_101557.1 627 7e-179
> Ahg934625 jgi|Araly1|934625|scaffold_402613.1
Length=780
Score = 1273 bits (689), Expect = 0.0
Identities = 750/779 (96%), Gaps = 5/779 (1%)
Strand=Plus/Plus
Query 99 TTTCTTCGGGTCTCATCACAATGAATGGCTTCTCTGATCTTAATCCTTCT--GAG-AGCA 155
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 3 TTTCTTCGGGTCTCATCACAATGAATGGCTTTTCTGATCTTAATCCTTCTGAGAGCAGCA 62
Query 156 AACCTTCTCTGTCACAACTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 215
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AACCTTCTCTGTCACATTTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 122
Query 216 TCTGTGACTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 275
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCTGTGATTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 182
Query 276 TTAACAATGGTGTCCCAATCGATGAGAAATTCTTTGTTGAGAACATTGCTGGAAAACACA 335
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 183 TTAACAATGGTGTCCCAATTGATGAGAAATTCTTTGTTGAGAATATTGCTGGAAAACACA 242
Query 336 ATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 395
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ATTCTGAAATTGCTCAAATTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 302
Query 396 ATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGCCACTTGATGGGC 455
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 303 ATGAGAAGGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGATAAAGCCACTTGATGGGC 362
Query 456 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTAACAAACG 515
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 363 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTTACAAACG 422
Query 516 CTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTGATTTCTTTCAAG 575
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 CTCCAAAAGAAAACGCAGAGCTCATGATATCAAAACTTGGTCTGACTGATTTCTTTCAAG 482
Query 576 CAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGACCTTACTTGAAGG 635
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 483 CAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGACCTTACTTGAAGG 542
Query 636 CTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGT-TTTCGAAGACTCGATCTCT 694
|||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 543 CTCTCAAAGTGCTTAACGTGTCAAAGGAGCACACTTTAGTGTTT-GAAGACTCGATCTCT 601
Query 695 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCAGTGATTGGACTGACTACAGGGAATCCA 754
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 602 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCTGTGATTGGACTCACTACAGGTAATCCA 661
Query 755 GCAAGCCTGCTTATGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 814
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCAAGCCTGCTTGTGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 721
Query 815 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCTTAAGTCTCACTTGTTTGGCTTAT 873
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 722 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCGTAAGTCTCACTTGTTTGGCTTAT 780
> Ahg933654 jgi|Araly1|933654|scaffold_401642.1
Length=547
Score = 627 bits (339), Expect = 7e-179
Identities = 373/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 324 CTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGT 383
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 127 CTGGAAAACACAATTCTGAAATTGCTCGAGTTCTGTTCCCTGATGATGTTTCAAGAGGGT 186
Query 384 TAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGC 443
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||
Sbjct 187 TAAAATTCTGTGATGAAAAAGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGACAAAGC 246
Query 444 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 306
Query 504 CGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTG 563
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 CGATTACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTTTGACTG 366
Query 564 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGAC 623
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 367 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGAC 426
Query 624 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAG 683
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 427 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACACTAGTGTTCGAAC 486
Query 684 ACTCGATCTCTGGGATAAAAGCTGGAGTTG 713
|||| |||||| |||| |||||||||||||
Sbjct 487 ACTCTATCTCTAGGATTAAAGCTGGAGTTG 516
> Ahg920276 jgi|Araly1|920276|scaffold_101557.1
Length=547
Score = 627 bits (339), Expect = 7e-179
Identities = 373/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 324 CTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGT 383
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 127 CTGGAAAACACAATTCTGAAATTGCTCGAGTTCTGTTCCCTGATGATGTTTCAAGAGGGT 186
Query 384 TAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGC 443
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||
Sbjct 187 TAAAATTCTGTGATGAAAAAGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGACAAAGC 246
Query 444 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 503
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 247 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATTGTGGATTGAAACGAGCTG 306
Query 504 CGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTG 563
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 307 CGGTTACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTTTGACTG 366
Query 564 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGAC 623
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 367 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGAC 426
Query 624 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAG 683
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 427 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACACTAGTGTTCGAAC 486
Query 684 ACTCGATCTCTGGGATAAAAGCTGGAGTTG 713
|||| |||||| |||| |||||||||||||
Sbjct 487 ACTCTATCTCTCGGATTAAAGCTGGAGTTG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5