BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38750.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg482887 jgi|Araly1|482887|fgenesh2_kg.4__1947__AT2G38750.1 1685 0.0 > Ahg482887 jgi|Araly1|482887|fgenesh2_kg.4__1947__AT2G38750.1 Length=1246 Score = 1685 bits (912), Expect = 0.0 Identities = 1036/1095 (95%), Gaps = 12/1095 (1%) Strand=Plus/Plus Query 49 AACTGCAAGAAAATGGCTCTTCCTCTCGAGCTCGAAAGCCTCACTGAAGCCATCTCAGCT 108 |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | Sbjct 4 AACTGCAAGAAAATGGCTCTTCCTCTCGAGTTCGAAAGCCTCACTGAAGCCA--T-A--T 58 Query 109 GGGATGGGAATGGGAGTTGATGAGAATGCATTGATAAGCACACTGGGGAAATCGCAAAAG 168 | ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 59 --CA-GGG-ATGGGAGTTGATGAGAAGGCATTGATAAGCACATTGGGGAAATCGCAAAAG 114 Query 169 GAACATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTTGAAGATGAGGAAAGA 228 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 115 GAGCATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTGGAAGATGAAGAAAGA 174 Query 229 GCTTTTGAGAAATGTCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCCCGCTTC 288 |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| Sbjct 175 GCTTTTGAGAAATGCCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCTCGATTC 234 Query 289 AATACTGCGGTGGTGATGTGGGCAATGCATCCATGGGAGAGAGATGCAAGGTTGGTGAAG 348 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 235 AATAATGCGGTGGTGATGTGGGCGATGCATCCATGGGAGAGAGACGCAAGGTTGGTGAAG 294 Query 349 AAAGCTTTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 408 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 AAAGCATTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 354 Query 409 TCTGCTGAGGATCTCCTCGGTGCACGTAAAGCTTACCACTCTCTCTTCGACCAATCAATG 468 || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 355 TCCGCTGAGGATCTCCTCGGTGCACGCAAAGCTTATCACTCTCTTTTCGACCAATCAATG 414 Query 469 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCAGCGCAAGTTGCTTGTGGGGCTCGTG 528 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 415 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCATCGCAAGTTGCTTGTGGGGCTCGCG 474 Query 529 AGTGCTTATAGATACGAAGGAAATAAGGTGAAGGATGATTCTGCCAAATCCGATGCTAAG 588 |||||||||||||| ||||| ||||||||||||||||||||| ||||||| || |||||| Sbjct 475 AGTGCTTATAGATATGAAGGGAATAAGGTGAAGGATGATTCTACCAAATCGGAGGCTAAG 534 Query 589 ATTCTAGCCGAAGCAGTGGCTTCTTCAGGCGAAGAAGCCGTGGAGAAGGATGAGGTTGTT 648 ||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||| Sbjct 535 ATTCTGGCCGAAGCAGTGGCTTCTTCGGGCGAAGAAGTCGTGGAAAAGGATGAGGTTGTT 594 Query 649 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTTAACGAA 708 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 595 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTCAATGAA 654 Query 709 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTAAGTCTTCTCTTCTCAATGAAGCATTG 768 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 655 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTCAGTCTTCGCTTCTCAATGAAGCATTG 714 Query 769 ATTTGTTTGCTCAAACCGGCTCTGTATTTCAGCAAGATTTTGGATGCGTCTCTGAACAAA 828 |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 715 CTTTGTTTGCTCAAACCGGCTGTGTATTTCAGCAAGATTTTGGATGCATCTCTGAACAAA 774 Query 829 GACGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 888 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 GAAGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 834 Query 889 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 894 Query 949 CAAAGAATCCAAGAGAAGATAAAAGGGAACTACAGAGATTTCTTGCTCACACTTCTCTCC 1008 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 895 CAAAGAATCCAAGAGAAGATTAAAGGGAACTACAGAGATTTCTTTCTCACACTGCTCTCC 954 Query 1009 AAATCCGATTGATTTCGTGTTGAGAAACCTATTACCAATACTTTTGGTTATTGAAGATTT 1068 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 955 AAATCCGATTGATTTCGTGTTGAGAAAACTATTACCAAAACTTTTGGTTATTGAAGATTT 1014 Query 1069 ATGATTTCCCTTTTTATGGTTTTAT--GTTTCTAATTCCTAAATTTGCGTTTTCTCTACC 1126 || ||||||||||| |||||||||| |||||||||||| ||||||||||||| | |||| Sbjct 1015 ATCATTTCCCTTTT-ATGGTTTTATATGTTTCTAATTCCAAAATTTGCGTTTTATATACC 1073 Query 1127 GTTTGGTAATAAAGA 1141 |||||||||||||| Sbjct 1074 ATTTGGTAATAAAGA 1088 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5