BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38750.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482887 jgi|Araly1|482887|fgenesh2_kg.4__1947__AT2G38750.1 1685 0.0
> Ahg482887 jgi|Araly1|482887|fgenesh2_kg.4__1947__AT2G38750.1
Length=1246
Score = 1685 bits (912), Expect = 0.0
Identities = 1036/1095 (95%), Gaps = 12/1095 (1%)
Strand=Plus/Plus
Query 49 AACTGCAAGAAAATGGCTCTTCCTCTCGAGCTCGAAAGCCTCACTGAAGCCATCTCAGCT 108
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
Sbjct 4 AACTGCAAGAAAATGGCTCTTCCTCTCGAGTTCGAAAGCCTCACTGAAGCCA--T-A--T 58
Query 109 GGGATGGGAATGGGAGTTGATGAGAATGCATTGATAAGCACACTGGGGAAATCGCAAAAG 168
| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 59 --CA-GGG-ATGGGAGTTGATGAGAAGGCATTGATAAGCACATTGGGGAAATCGCAAAAG 114
Query 169 GAACATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTTGAAGATGAGGAAAGA 228
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 115 GAGCATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTGGAAGATGAAGAAAGA 174
Query 229 GCTTTTGAGAAATGTCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCCCGCTTC 288
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 175 GCTTTTGAGAAATGCCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCTCGATTC 234
Query 289 AATACTGCGGTGGTGATGTGGGCAATGCATCCATGGGAGAGAGATGCAAGGTTGGTGAAG 348
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 235 AATAATGCGGTGGTGATGTGGGCGATGCATCCATGGGAGAGAGACGCAAGGTTGGTGAAG 294
Query 349 AAAGCTTTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 408
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAAGCATTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 354
Query 409 TCTGCTGAGGATCTCCTCGGTGCACGTAAAGCTTACCACTCTCTCTTCGACCAATCAATG 468
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 355 TCCGCTGAGGATCTCCTCGGTGCACGCAAAGCTTATCACTCTCTTTTCGACCAATCAATG 414
Query 469 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCAGCGCAAGTTGCTTGTGGGGCTCGTG 528
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 415 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCATCGCAAGTTGCTTGTGGGGCTCGCG 474
Query 529 AGTGCTTATAGATACGAAGGAAATAAGGTGAAGGATGATTCTGCCAAATCCGATGCTAAG 588
|||||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 475 AGTGCTTATAGATATGAAGGGAATAAGGTGAAGGATGATTCTACCAAATCGGAGGCTAAG 534
Query 589 ATTCTAGCCGAAGCAGTGGCTTCTTCAGGCGAAGAAGCCGTGGAGAAGGATGAGGTTGTT 648
||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 535 ATTCTGGCCGAAGCAGTGGCTTCTTCGGGCGAAGAAGTCGTGGAAAAGGATGAGGTTGTT 594
Query 649 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTTAACGAA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 595 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTCAATGAA 654
Query 709 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTAAGTCTTCTCTTCTCAATGAAGCATTG 768
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 655 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTCAGTCTTCGCTTCTCAATGAAGCATTG 714
Query 769 ATTTGTTTGCTCAAACCGGCTCTGTATTTCAGCAAGATTTTGGATGCGTCTCTGAACAAA 828
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 715 CTTTGTTTGCTCAAACCGGCTGTGTATTTCAGCAAGATTTTGGATGCATCTCTGAACAAA 774
Query 829 GACGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 888
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAAGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 834
Query 889 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 894
Query 949 CAAAGAATCCAAGAGAAGATAAAAGGGAACTACAGAGATTTCTTGCTCACACTTCTCTCC 1008
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 895 CAAAGAATCCAAGAGAAGATTAAAGGGAACTACAGAGATTTCTTTCTCACACTGCTCTCC 954
Query 1009 AAATCCGATTGATTTCGTGTTGAGAAACCTATTACCAATACTTTTGGTTATTGAAGATTT 1068
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 955 AAATCCGATTGATTTCGTGTTGAGAAAACTATTACCAAAACTTTTGGTTATTGAAGATTT 1014
Query 1069 ATGATTTCCCTTTTTATGGTTTTAT--GTTTCTAATTCCTAAATTTGCGTTTTCTCTACC 1126
|| ||||||||||| |||||||||| |||||||||||| ||||||||||||| | ||||
Sbjct 1015 ATCATTTCCCTTTT-ATGGTTTTATATGTTTCTAATTCCAAAATTTGCGTTTTATATACC 1073
Query 1127 GTTTGGTAATAAAGA 1141
||||||||||||||
Sbjct 1074 ATTTGGTAATAAAGA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5