BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38760.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345659 jgi|Araly1|345659|fgenesh1_pg.C_scaffold_4002001 1402 0.0
Ahg933035 jgi|Araly1|933035|scaffold_401023.1 226 3e-58
> Ahg345659 jgi|Araly1|345659|fgenesh1_pg.C_scaffold_4002001
Length=984
Score = 1402 bits (759), Expect = 0.0
Identities = 913/985 (93%), Gaps = 20/985 (2%)
Strand=Plus/Plus
Query 93 ATGGCCACCATTAGAGTACCAAACGAAGTTCCTTCTCCAGCTCAGGATTCTGAAACTCTC 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCACCATTAGAGTACCAAACGAAGTTCCTTCTCCAGCTCAGGATTCTGAAACTCTC 60
Query 153 AAACAAGCTATTCGCGGATGGGGAACAGATGAGAAGGCGATTATACGAGTTTTAGGGCAA 212
|| |||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 AATCAAGCTTTTCGTGGATGGGGAACAGATGAGAAAGCGATTATACGAGTTTTAGGACAA 120
Query 213 AGAGACCAGAGCCAGAGAAGGAAG-ATTAGAGAAAGTTTTAGAGAGATTTATGGCAAAGA 271
||||| ||||||| |||||| || || ||||||| || | ||||||||| ||||||||
Sbjct 121 AGAGATGAGAGCCAAAGAAGG-AGAATCAGAGAAACTTACAAAGAGATTTACGGCAAAGA 179
Query 272 TCTTATCGATGTTCTATCCTCCGAACTGTCTGGTGATTTCATGAAAGCTGTGGTTTCGTG 331
||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTATCCATGATCTCTCCTCTGAATTGTCTGGTGATTTCATGAAAGCTGTGGTTTCGTG 239
Query 332 GACGTATGATCCAGCAGAGAGAGACGCAAGGCTTGTGAACAAGATTTTGAACAAGGAGAA 391
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 240 GACGTATGATCCAGCTGAGAGAGACGCAAGGCTTGTGAACAAGATTTTGAAGGATAAGAA 299
Query 392 GAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACGACTTCCCC 451
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 GAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACAACTTCTCC 359
Query 452 AAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTCTTGAAGA 511
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 360 AAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCTCTCTTTGACTCATCACTTGAAGA 419
Query 512 ACACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGTTACTGGTGACATTGGCAAGTAC 571
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 420 AGACATTGCTTCTTCTCTGCCTTTTCCTCTTGCAAAGTTTCTGGTGACATTGGCAAGTTC 479
Query 572 ATTCAGATATGACAAAGATAGGACTGATGCAGAAGTAGCTACTATTGAGGCGGCTATGCT 631
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTCAGATATGAAAAAGACAAGACTGATGCAGAAGTAGCTACTATTGAGGCGGCTATGCT 539
Query 632 ACGTGAAGCCATAGAGAAGAAACAATTAGATCATGACCATGTCCTGTACATATTAGGAAC 691
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 ACGTGAAGCCATAGAGAAGAAACAATTAGATCATGATCATGTCCTGTACATATTAGGAAC 599
Query 692 GCGTAGTATCTATCAGCTCAGAGAAACTTTTGTTGCTTACAAGAAGAATTATGGGGTCAC 751
|||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 600 GCGTAGTATCTACCAGCTCAGAGAAACTTTTGTCGCTTACAAGAAGAACTATGAGGTCAC 659
Query 752 AATTGAT-A-----AG------G------ATGTTGATGGATGTCCAGGAGATGCTGATCT 793
||||||| | || | |||||||||||||||||||||||||||||||
Sbjct 660 AATTGATGAGGTTCAGATTCATGGTTTGGATGTTGATGGATGTCCAGGAGATGCTGATCT 719
Query 794 GAGAAGTCTATTGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAA 853
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGGAGTCTATTGCAGATGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAA 779
Query 854 GGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGAT 913
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GGTTGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGAGCGAT 839
Query 914 TGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAGAGTATTTCAACATGTATAA 973
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 TGTGGCGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAGAGTATTTCAACATGTACAA 899
Query 974 TACAAGCATGGACAATGCTATTACTGGTGATATTTCTGGAGACTACAAGGACTTCATTAT 1033
|||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 900 TACAAGCATGGATAACGCTATCACCGGTGATATTTCTGGAGACTACAAGGACTTCATTAT 959
Query 1034 CACCTTACTTGGATCCAAAATCTGA 1058
||| |||||||||||||||||||||
Sbjct 960 CACTTTACTTGGATCCAAAATCTGA 984
> Ahg933035 jgi|Araly1|933035|scaffold_401023.1
Length=355
Score = 226 bits (122), Expect = 3e-58
Identities = 142/152 (93%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 385 AGGAGAAGAAGAAGAAAAGCTTAGAGAATTTGAAGGTTATAGTAGAGATCTCTTGCACGA 444
|||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |
Sbjct 157 AGGAGAAGAAGAAGAAGAGCATAGAGAATTTGAAGGTTATAGTGGAGATCTCTTGCAAAA 216
Query 445 CTTCCCCAAACCATTTGATTGCTGTGAGGAAAGCTTATTGTTCACTCTTTGACTCTTCTC 504
|||| |||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||
Sbjct 217 CTTCTCCAAACCATTTGATTGTTGTGAGGAAAGCTTATTGTTCTCTCTTTCACTCATCTC 276
Query 505 TTGAAGAACACATTGCTTCTTCTCTGCCTTTT 536
||||||||||||||||||||||||||||||||
Sbjct 277 TTGAAGAACACATTGCTTCTTCTCTGCCTTTT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5