BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38790.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482891 jgi|Araly1|482891|fgenesh2_kg.4__1951__AT2G38790.1 1011 0.0
Ahg481573 jgi|Araly1|481573|fgenesh2_kg.4__633__AT2G38790.1 774 0.0
Ahg900346 jgi|Araly1|900346|Al_scaffold_0004_996 278 8e-74
> Ahg482891 jgi|Araly1|482891|fgenesh2_kg.4__1951__AT2G38790.1
Length=968
Score = 1011 bits (547), Expect = 0.0
Identities = 681/741 (92%), Gaps = 27/741 (4%)
Strand=Plus/Plus
Query 58 CAAAAGATTTGGCCAACTTCTTTCTTGCTGTTGTGATTGTGAA-AATTATGTCTATGGGG 116
|||||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||
Sbjct 32 CAAAAGATTTGGCCAACTTCTTTCTTTCTGTGGTGATTGCGAATAAGTATGTCTATGGGG 91
Query 117 AAGAAACATCTTAACATCAATTCTCAGAATCACCAATCCACAAAGGACGAAGACAACAAT 176
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 92 AAGAAACATCTTAACATCAATTCTCTGAATCACCAATCCACAAAGGACGAAGGCAACAAC 151
Query 177 TGCAAGAACAGTCTCTTCTTTGGATTGTTTGACGACCCTGAATCTAAAAGGTTGAGAAGT 236
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 152 TGCAAGAACAGCCTCTTCTTTGGATTGTTTGATGACCCTGAATCTACAAGGTTGAGAAGT 211
Query 237 GGGAGTATGAAGAGACAGTACAGCGACATGGGAGATAGCTACCACAGAGTTTATGACGAA 296
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 212 GGGAGTATGAAGAGACAATACAGCGACATGGGAGATAGCTACCACAGAGTTTATGAAGAA 271
Query 297 CAAAatgatgatgttgaatatgatggtgatggtgatggtgatgaggatgagggatcaagg 356
|||||||||||||||| || | | |||||||||| | | | |||||||||||||||
Sbjct 272 CAAAATGATGATGTTG-AT-T-A---TGATGGTGAT-G-G-T---GATGAGGGATCAAGG 319
Query 357 atggacatgagagtac-tgatggtATTAGAGTATATGAGAGAGCTTTACGTGGGACAACT 415
|||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 ATGGACATGAAAGT-CTTGATGGTTTTAGAGTATATGAGAGAGCTTTACGTGGGACAACT 378
Query 416 TCAGCTGCTTAAAAAGATGTTTCCAGGTGCAGCTAAAGACGAGTTTCTTGGTTTCTTCAA 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 379 TCAGCTGCTTAAAAAGATGTTTCCAGGTGCAGCTAAAGAAGAGTTTCTTGGTTTCTTCAA 438
Query 476 CAAAATCGGAGACGCTGTGTCCCAAATT-AAACAAGATTCTCGTCCTCCTACAAAGTCAA 534
||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 439 CAAAATCGGAGACGCTGTGTCCCAA-TTCAAACAAGATTCTCGTCCTCATACAAAGTCAA 497
Query 535 TGACTATGCGGAGGAGTCTCAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAATT 594
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TGACTATGCAGAGGAGTCTTAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAATT 557
Query 595 TGGGTCCATCAGATCTAAGACATGAAAGGTTTAAAGTTACAATGGTTAATGCTGGTGGAG 654
|||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||
Sbjct 558 TGGGTCCATCAGATCTAAAAAATGATAGGTTTAAAGTTACAACGGTCAATGCTGGTGGAG 617
Query 655 CTG-C-----TGGT--T-CTGCGGGAGGAGGTAAAGGTGGCTCGGCAGCTGGTCAGGGTC 705
| | | |||| | ||||||||||||||||||||||||| || || |||||||| |
Sbjct 618 CCGGCGGAGCTGGTAGTTCTGCGGGAGGAGGTAAAGGTGGCTCAGCGGCCGGTCAGGGAC 677
Query 706 AGACCAAGAAGTAGTCAAGATTTGTGACATGTGGTGTGGCCATGGATGATCAAATCTTAT 765
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGACCAAGAAGTAGTTTGGATTTGTGACATGTGGTGTGGCCATGGATGATCAAATCTTAT 737
Query 766 GACTCCTCAGGGTTTAGCATT 786
|| | |||||||||||||||
Sbjct 738 GAGAC-TCAGGGTTTAGCATT 757
Score = 161 bits (87), Expect = 8e-39
Identities = 112/124 (90%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 904 TTTCCTAG-TGGGGTTTGTTTTATGTTTTAGTATCTATAGAGATGAAGTATCAGACTCAT 962
|||||||| ||||| ||||||| |||||||| || |||||||||||||||| | |||||
Sbjct 816 TTTCCTAGTTGGGG-TTGTTTTGTGTTTTAGGATTTATAGAGATGAAGTATTACTCTCAT 874
Query 963 CCAAAGGTAGAAGAAACTAGGATCAACTAGCTTTGTTTATTTATTCTCTTTGGTGTTTGA 1022
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 875 CCAAAGGTAGAAGAAACTAGGATCAACTAGCTTTGTTTATATATTCTCTTTAGTGATTGT 934
Query 1023 TTCT 1026
||||
Sbjct 935 TTCT 938
> Ahg481573 jgi|Araly1|481573|fgenesh2_kg.4__633__AT2G38790.1
Length=951
Score = 774 bits (419), Expect = 0.0
Identities = 557/619 (90%), Gaps = 27/619 (4%)
Strand=Plus/Plus
Query 449 TAAAGACGAGTTTCTTGGTTTCTTCAACAAAATCGGAGACGCTGTGTCCCAAATT-AAAC 507
|||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||
Sbjct 348 TAAAGATGAGTTTCTTGGTTTCTTCAGCAATATCGGAGACGCTGTGTCCC-AATTCAAAC 406
Query 508 AAGATTCTCGTCCTCCTACAAAGTCAATGACTATGCGGAGGAGTCTCAGTGCTGGTTCGC 567
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 407 AAGATTCTCGTTCTCCTACAAAGTCAATGACTATGCAGAGGAGTCTCAGTGCTGGTTCGT 466
Query 568 CACGTTTCACTTCGAAAGGGGTTAATTTGGGTCCATCAGATCTAAGACATGAAAGGTTTA 627
||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 467 CACGTGTCACCTCGAAAGGGGTTAAATTGGGTCCATCAGATCTAAGAGATGAAAGGTTTA 526
Query 628 AAGTTACAATGGTTAATGCTGGTGGAGCTGCTGGTTCTGCGGGAGGAGGTAAAGGTGGCT 687
||||||||| ||||||||||||| | | |||| | | | ||||||||||||||||| |
Sbjct 527 AAGTTACAACGGTTAATGCTGGT-G-G-TGCT-G--C--C-GGAGGAGGTAAAGGTGGGT 577
Query 688 CGGCAGCTGGTCAGGGTCAGACCAAGAAGTAGTCAAGATTTGTGACA--T-GTGGTGTGG 744
|||| ||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||
Sbjct 578 CGGCGGCTGGTCAGGGCCAGACCAAGAAGCAGTCAGGATTTGTGACATGTGGTGGTGTGG 637
Query 745 CCATGGATGATCAAATCTTATG--AC--TC-CTCAGGGTTTAGCATTGCACAAGCCGTTA 799
|||||||||||||||||||||| || || ||||||||||| |||| |||| | | |||
Sbjct 638 CCATGGATGATCAAATCTTATGAAACAGTCACTCAGGGTTTATCATTACACAGGACATTA 697
Query 800 CTATTTGCTACACGGAATGAAATGTGTAAAGTGTGGTTAAGACTTTTGAGTCAACTTGGG 859
|||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 698 CTATTTGCTAAATGGAATGAAATGTGAAAAGTGTGGTTAAGTCTTTTGAGTCAACTTGGG 757
Query 860 GATTCCAAGTTTTAAAGATGGATTTCAATTTCTTTATTCAATCATTTCCTAGTGGGGTTT 919
|||||| |||| ||||| ||||||||||||||||||||| | ||||||||| ||||||
Sbjct 758 GATTCCTAGTTCTAAAGGTGGATTTCAATTTCTTTATTC--T--TTTCCTAGTTGGGTTT 813
Query 920 GTTTTATGTTTTAGTATCTATAGAGATGAAGTATCAGACTCATCCAAAGGTAGAAGAAAC 979
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 814 GTTTTATGTTTTAGTATTTATAGAGATGAAGTATCAGACTCAACCAAAGGTAGAAGAAAC 873
Query 980 TAGGATCAACTAG--CTTTGTTTATTTATTCTCTTTGGTGTTTGATTCTC-TGATTCTGT 1036
|||||||||| || |||||||||| |||||||||||||| |||||||| | |||||||
Sbjct 874 TAGGATCAACAAGAGCTTTGTTTATATATTCTCTTTGGTGATTGATTCTAAT-ATTCTGT 932
Query 1037 TATGTTCTTTCAATTAATA 1055
|||||||||||||||||||
Sbjct 933 TATGTTCTTTCAATTAATA 951
Score = 183 bits (99), Expect = 2e-45
Identities = 164/192 (85%), Gaps = 18/192 (9%)
Strand=Plus/Plus
Query 53 CTGCTCAAAAGATTTGGCCAACTTCTTTCTTGCTGT--T-GTGATTGTGAA-AATTATGT 108
||||||||||| ||||||||||||||||||| |||| | ||||||||||| ||| ||||
Sbjct 26 CTGCTCAAAAGTTTTGGCCAACTTCTTTCTTTCTGTGGTGGTGATTGTGAATAATAATGT 85
Query 109 CTATGGGGAAGAAACATCTTAACATCAATTCTCAGAATCACCAA--TCCACAAAGG---A 163
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 86 CTATGGGGAAGAAACATCTTAACATCAATTCTCTGAATTACCAAAATCCACAAAGGGTGA 145
Query 164 ------CGAA---GACAACAATTGCAAGAACAGTCTCTTCTTTGGATTGTTTGACGACCC 214
|||| |||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 146 AGAAAACGAAAAAGACAACAACCGCAAGAACAGTCTCTTCTTTGGATTATTTGATGACCC 205
Query 215 TGAATCTAAAAG 226
|||||||| |||
Sbjct 206 TGAATCTACAAG 217
Score = 154 bits (83), Expect = 1e-36
Identities = 104/113 (92%), Gaps = 6/113 (5%)
Strand=Plus/Plus
Query 269 AGATAGCTACCACAGAGTTTATGACGAACAAAatgatgatgttgaatatgatggtgatgg 328
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 216 AGATAGCTACCACAGAGTTTATGACGAACAAAATGATGATGTTGGTTATGATGGTGATGG 275
Query 329 tgatggtgatgaggatgagggatcaaggatggacatgagagtactgatggtAT 381
|||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 276 CGATG---ATGA---TGAGGGATCAAGGATGGACATGAGAGTACTGATGGTAT 322
> Ahg900346 jgi|Araly1|900346|Al_scaffold_0004_996
Length=228
Score = 278 bits (150), Expect = 8e-74
Identities = 210/237 (89%), Gaps = 12/237 (5%)
Strand=Plus/Plus
Query 534 ATGACTATGCGGAGGAGTCTCAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAAT 593
|||||||||| ||||||||||||||||| |||| ||||| |||| |||||| |||||||
Sbjct 1 ATGACTATGCAGAGGAGTCTCAGTGCTGCTTCGTCACGTGTCACCTCGAAATGGGTTAAA 60
Query 594 TTGGGTCCATCAGATCTAAGACATGAAAGGTTTAAAGTTACAATGGTTAATGCTGGTGGA 653
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 61 TTGGGTCCATCAGATCTAAGAGATGAAAGGTTTAAAGTTACAACCGTTAATGCTGGT-G- 118
Query 654 GCTGCTGGTTCTGCGGGAGGAGGTAAAGGTGGCTCGGCAGCTGGTCAGGGTCAGACCAAG 713
| |||| | | | ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 119 G-TGCT-G--C--C-GGAGGAGGTAAAGGTGGGTCGGCGGCTGGTCAGGGCCAGACCAAG 171
Query 714 AAGTAGTCAAGATTTGTGACATGTGGTG-TG-G-CCATGGATGATCAAATCTTATGA 767
||| ||||| |||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 172 AAGCAGTCAGGATTTGTGACATGTGGTGGTGTGGCCATGGATGATCAAATCTTATGA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5