BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38800.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482892 jgi|Araly1|482892|fgenesh2_kg.4__1952__AT2G38800.1 2737 0.0
> Ahg482892 jgi|Araly1|482892|fgenesh2_kg.4__1952__AT2G38800.1
Length=2082
Score = 2737 bits (1482), Expect = 0.0
Identities = 1848/2014 (92%), Gaps = 68/2014 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCAGAGGAAGAAGACTTGTCTAACAATCGAGTCTTCTTCCAATCTCCAACCTGAA 60
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCAGA-G--GAAGACTTGTCTAACAATCGAGTCTTCTTCCAATCTCCAACCTGAA 57
Query 61 ACTCGGTTTGGGCAAGAACATCTCAAGAATCTTGGACCAGAGATGATGATGATGAAGAGA 120
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 ACTCGATTCGGACAAGAACATCTCAAGAACCTTGGACCAGAGATGATGATGATGAAGAGA 117
Query 121 ACTAAACCTAGGAGGAAGCTTAAAGACAATCATGTTTCTTCTCAATCAGGTAAGTCACAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACTAAACCTAGAAGGAAGCTTAAAGACAATCATGTTTCTTCTCAATCAGGTAAGTCACAA 177
Query 181 GAACTACCAAAGCATGACCTTGTTGTTAAAGTGATAGGTGGTTCACCTAATTACATGAAA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAACTACCAAAGCATGATCTTGTTGTTAAAGTGATAGGTGGTTCACCTAATTACATGAAA 237
Query 241 GGCACCAGTAGTTCTGAGGCAAGGAAGGAGAACAAGAAAAAATTTAATCTTTCTAGGAAT 300
||||| ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||
Sbjct 238 GGCACTAGTAGTTCTGAGGCAAGAAAGGAGAACAAGAAAAGACTTAATCTTTCAAGGAAT 297
Query 301 CAGAAGAACCAAACCGGTTC-AAAACATGATTCTCGTTATGGAGTTAACAAGGAAAGAAG 359
|||||||||||| | || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 298 CAGAAGAACCAAGCTGG-TCTAAAACATGATTCTCGTTATGGAGTTAACAAGGAGAGAAG 356
Query 360 TTGTAACAAGTCGAGTTCGAGGAACGGTAGAGGTTTGACAAAGGCTCCGATTTTCAAGAG 419
|| ||||||| ||||||| |||| |||||| ||||||||||||||||||| |||||||||
Sbjct 357 TTATAACAAGCCGAGTTCTAGGATCGGTAGGGGTTTGACAAAGGCTCCGAGTTTCAAGAG 416
Query 420 ATGTTCACAGAGAGCTACTTGTTCTTCAACTCTAAAAGATTCCAAGTTTCCAGAGTATTT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 ATGTTCACAGAGAGCTACTTGTTCTTCAACTCTAAAAGATTCCAAGTTTCCAAAGTATTT 476
Query 480 GATGCTTAACCATGGCGAGACTTTTGACCAAGTTAATGGAACCTCTGTCTTGAAAGTCTG 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 GATGCTTAACCATGGCGAGACTTTTGATCAAGTTAATGGAACCTCTGTCTTGAAAGTCTG 536
Query 540 TCCTTACACGTATTGTTCACTCAACGGTCATCTTCA-TGCAGCGCAGTATCCTCCTCTGA 598
|||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||
Sbjct 537 TCCTTACACGTATTGTTCACTCAACGGTCATCTTCACT-CCGTGCAGTATCCTCCTCTGA 595
Query 599 AAAGCTTCATATCGTTGAGGAGACAGAGTTTGAAGTCACAAAAGAGTGTGAAAATGGAAG 658
||||||| ||||| | |||||| |||||||||||||| || |||||||||||||||||||
Sbjct 596 AAAGCTTTATATCCTCGAGGAGGCAGAGTTTGAAGTCCCAGAAGAGTGTGAAAATGGAAG 655
Query 659 CTTCTGAGGAAGAGTTTGTGAAGATGGATGATCTAGAGGAGAAGAAAGAGTTTGAGAATG 718
||| | ||||||||| ||| ||||||||| || | ||||||||||||||||||||| ||
Sbjct 656 CTTATAAGGAAGAGTATGTTAAGATGGAT-AT-T-GAGGAGAAGAAAGAGTTTGAGGAT- 711
Query 719 GT-AATGGAGGTTCTTGTGAGGTTGATATTGATAGTCAAATATCGGAAACTGTTTCTGAA 777
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 GTAAATGGAGGTGCTTGTGAGGTTGATATTGATAGTCAAATCTCGGAAACTGTTTCTGAA 771
Query 778 GGAGCACCTCGTTCTGAAACTGATTCTGATGATTACTCTGATAGTGC--------TGAG- 828
|||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 GGAGCACCTCATTCTGAAACTGATTCTGATGATTACTCTGATAGTGCTGAGATGGTGAGT 831
Query 829 --AT------G-G----TG--ATTGAGTTAAAAGAATCTTGTTTGGAGGAGACTTTGGTG 873
|| | | || |||||||||||||||||| |||||||||||||||||||
Sbjct 832 TTATCAGAAGGTGATCATGACATTGAGTTAAAAGAATCTGGTTTGGAGGAGACTTTGGTA 891
Query 874 GATGACTCTGAGAATGAGGTCCAAGAGAAAGC-AAACAGAGATGGAGATACCT-ACCTAT 931
|||||||||| ||||||||| ||||||||| | ||||||||||||||||| || | || |
Sbjct 892 GATGACTCTGTGAATGAGGTACAAGAGAAA-CTAAACAGAGATGGAGATA-CTGATCTTT 949
Query 932 TAAAAGAATCTGACTTGGAGGAGACTTTGGTTGAGGATTC--T--ATGA-A-TCAAGATG 985
||||||||||||| ||||||||||||||||| ||||| || | |||| | ||||||||
Sbjct 950 TAAAAGAATCTGATTTGGAGGAGACTTTGGTAGAGGACTCAATGAATGAGATTCAAGATG 1009
Query 986 AAGGAAACAGAGATGGAGATGCTGATCACTCTGGTTGCTTTGATTCTGAAGTTATTGGTA 1045
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1010 AAGGAAACAGAGATGGAGATTCTGATCACTCTGGTTGCTTTGATTCTGAAGTTATCGGTA 1069
Query 1046 TAATCAAGAACTCAGAAGCAGATATTGTTATTGATGAGACTTTGATAGATGACTCTGTGA 1105
|||||||||||||||||||||||| || || || ||||||||| |||||||||||||||
Sbjct 1070 TAATCAAGAACTCAGAAGCAGATAATGCAATGGAGGAGACTTTGGTAGATGACTCTGTGA 1129
Query 1106 AAGATTTCGAAGATACAACAAACATATATGGGGATGCTAATGAATTTGGTTGCTTTAATT 1165
||||| ||||||| ||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1130 AAGATCTCGAAGAGACAGCAAACATAGATGGGGATGCTAATCTATTTGGTTGCTTTAATT 1189
Query 1166 CTGAAGTTATCGATATGATGAAGAACACAGAAGCAGATACTGCAATCGGGGAGACTTTGG 1225
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1190 CTGAAGTTATCGATATGATGAAGAACAAAGAAGCAGATAATGCAATCGAGGAGACTTTGG 1249
Query 1226 TAGATGAGTCTATGAAAGAGATCCAGGAGAAAGAAAACAAAGATGAAGATGCTGATGAAT 1285
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1250 TAGATGACTCTATGAAAGAGATCCAAGAGAAAGAAAACAAAGATGAAGATGCTGATGAAT 1309
Query 1286 CTAGTTGCTTTGTTTCAGAACTTATCGATATGATAAAGAACTCAGCTGCAAGTGATGCTA 1345
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 1310 CTAGTTGCTTTGTTTCAGAAGTTATTGATATGATAAAGAACTCAGCTGCAGGTGATGCTA 1369
Query 1346 TTGAGGATAAAGATGCTACTGGTGAAGAGACACTAAAGGATAAAGCTGAAGATTGCAAAG 1405
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1370 TTGAGGATAAAGATGCTGCTGGTGAAGAGACACTAAAGGATAAAGCTGAAGACTGCAAAG 1429
Query 1406 AGGTGTCTAAAGGCCAGACTGAAGTTATATTGATGACAGAAGAAAATGCAAAGGTTCCAT 1465
||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1430 AGGAGTTTCAAGACCAGACTGAAGTTATATTGATGACAGAAGAAAAGGCAAAGGTTCCAT 1489
Query 1466 TTAACCGTACACGAAAACCCTGCAAACAAGAAGAGTCAGGCTCTACCATTTCATGGACTA 1525
||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||
Sbjct 1490 TTAACCGTACACGAAAACCCTGCAACCAAGAAGAGCCAGACTCTAGCATTTCATGGACTA 1549
Query 1526 TCATCAAATGCAAGAAACCCGTTGCAGAGACCGAGGATTTAAGAGAATTTAATCCAAGAG 1585
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1550 TCATCAAATGCAAGAAACCCGTTGCAGAGACCGAGGATTTAAGAGCATTCAACCCAAGAG 1609
Query 1586 AACCAAATTACCTTCCAGCTGTAATGGATGAGGATGCTGAAAAAGTGGACCTCAAGCATC 1645
|||| ||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||
Sbjct 1610 AACCCAATTACCTTCCAGTTGTAGTGGAGGAGGATGCTGAAAAGGTGGACCTCAAGCATC 1669
Query 1646 AAGACATAGATGAGAGGAGAAATTCAGAGGATTGGATGTTTGATTATGCTCTGCAGCGTG 1705
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1670 AAGACATAGATGAGAGGAGAAAGTCAGAGGATTGGATGTTTGATTATGCTTTGCAGCGTG 1729
Query 1706 CTGTTAGCAAACTTGCCCCAGCAAGGAAGAGGAAAGTTGCATTACTCGTAGAGGCATTTG 1765
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1730 CTGTTAGCAAACTTGCCCCAGCAAGGAAGAGGAAAGTTGCATTACTCGTCGAGGCATTTG 1789
Query 1766 AAACCGTGCAACCACATGGTAGAGAACCTGA-ACAGGTTTTAAGTTATGGAAGACACCTT 1824
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1790 AAACCGTGCAACCACATGGTAGAGAACCT-ACACAGGTTTTAAGTTATGGAAGACACCTT 1848
Query 1825 CAAGCCTGCAATTAAC-----G---AAGGTCCAGGGATGATCCAAGGAAGCCAACTAAAG 1876
||||||||||||||| | ||||||||||||||||||||| ||| ||||| |
Sbjct 1849 CAAGCCTGCAATTAATATAAAGGTGAAGGTCCAGGGATGATCCAAGAAAGGCAACT---G 1905
Query 1877 GAAAGATGAGTGACCTTTGTTTATTTACTTACAAGAATCAAACCCAAGTGTAAACTTTGA 1936
|| | || | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 -AA-G--GA---A--TTTATTTATTTACTTACAAGAATCAAACCCAAGTGTAAACTTTGA 1956
Query 1937 TGGTTTATTTCCTAGTTCTTTGTGTGGTATTTAT 1970
||||||||||| ||| ||||||||||||| ||||
Sbjct 1957 TGGTTTATTTCATAGCTCTTTGTGTGGTAGTTAT 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5