BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38810.1

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482894 jgi|Araly1|482894|fgenesh2_kg.4__1954__AT2G38810.2         669    0.0  


> Ahg482894 jgi|Araly1|482894|fgenesh2_kg.4__1954__AT2G38810.2
Length=455

 Score =  669 bits (362),  Expect = 0.0
 Identities = 415/440 (94%), Gaps = 5/440 (1%)
 Strand=Plus/Plus

Query  117  ATATGGCTGGTAAAGGTGGGAAAGGGCTTCTAGCTGCGAAGACGACGGCAGCAGCTGCAA  176
            |||||||||||||||| |||||||| ||| |||||||||||||||| |  |||||||| |
Sbjct  20   ATATGGCTGGTAAAGGCGGGAAAGGACTTATAGCTGCGAAGACGAC-G--GCAGCTGCTA  76

Query  177  ACAAAGACAGTGTTAAGAAGAAATCCATCTCTCGCTCTTCTCGTGCTGGTATTCAGTTTC  236
            |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  77   ACAAAGACAGTGGTAAGAAGAAATCCATCTCTCGCTCTTCTCGCGCCGGTATTCAGTTTC  136

Query  237  CAGTGGGTCGTATTCATCGTCAACTCAAGCAAAGAGTTTCAGCACATGGAAGAGTTGGTG  296
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  137  CAGTCGGTCGTATTCATCGTCAACTCAAGCAAAGAGTTTCAGCACATGGAAGAGTTGGTG  196

Query  297  CCACTGCTGCTGTTTACACTGCATCAATTCTAGAATACTTGACTGCTGAAGTACTCGAGT  356
            ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  197  CCACTGCTGCTGTCTACACTGCATCAATTCTAGAATACTTAACTGCTGAAGTTCTCGAGT  256

Query  357  TAGCTGGAAATGCGAGCAAGGATCTCAAAGTGAAGAGAATTACACCAAGACATTTGCAGC  416
            ||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct  257  TAGCTGGAAATGCAAGCAAGGATCTGAAAGTGAAGAGAATAACACCAAGGCATTTGCAGC  316

Query  417  TTGCAATCAGAGGAGATGAGGAACTTGACACTCTCATCAAAGGAACCATTGCAGGAGGAG  476
            |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct  317  TTGCAATCAGAGGAGATGAGGAGCTTGACACTCTCATTAAAGGAACAATTGCAGGAGGAG  376

Query  477  GTGTGATCCCTCACATCCACAAGTCCCTTGTCAACAAAGTCACCAAGGATTGAGTTTC-G  535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  377  GTGTGATCCCTCACATCCACAAGTCCCTTGTCAACAAAGTCACCAAGGATTGAGTATCTG  436

Query  536  CTCTCTGAGTCCTAAGTCTC  555
             |||| ||||||||||||||
Sbjct  437  -TCTCCGAGTCCTAAGTCTC  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25275493971


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5