BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38820.2
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482896 jgi|Araly1|482896|fgenesh2_kg.4__1956__AT2G38820.1 1027 0.0
> Ahg482896 jgi|Araly1|482896|fgenesh2_kg.4__1956__AT2G38820.1
Length=1434
Score = 1027 bits (556), Expect = 0.0
Identities = 714/784 (91%), Gaps = 35/784 (4%)
Strand=Plus/Plus
Query 129 aaaTGATGAAATCGACGGCGAGATTTGCGTCTGATTGTCGTTATAATGATCACAAAAGCA 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 28 AAATGATGAAATCGACGGCGAGATTTGCGTCTGATTGTCGTTATAATGATCACAAAAGAA 87
Query 189 TAAAAGCGTGACGTTTCCGCGTCTTCGCGTATCTCGGAAACTTTAATCCGTATCTAAAGA 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TAAAAGCGTGACGTTTCCGCGTCTTCGCGTATCTCGGAAACTTTAATCCGTATCTAAAGA 147
Query 249 GCTAAATTTGAAGCGATCTTTCTCTTTTTCTTTTAATATTGttttttttCCTTGAAGCTT 308
||||||||| |||||||||||||||||||||||| ||| | |||||||||| ||| ||||
Sbjct 148 GCTAAATTTAAAGCGATCTTTCTCTTTTTCTTTTTATA-T-TTTTTTTTCC-TGAGGCTT 204
Query 309 GCCTAGTTTCGAAGTTATTCCATGTTTTATCTTCAATTCTAGATCATAGTTTTTG----G 364
||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 205 GCCCAGTTTCGAAGTTATTCCATGCTTTATCTTCAATTTTAGATCATAGTTTTCGACAAA 264
Query 365 AA-A--T-----TTAGGTTTTAGttttttttGTTAAGCTCGATCTGGATTTGCCGATTTG 416
|| | | ||||||||||| |||||||||| |||| |||||||||||| |||||||
Sbjct 265 AATATTTGGAGATTAGGTTTTAG-TTTTTTTGTTCAGCTTGATCTGGATTTGGCGATTTG 323
Query 417 AAATTTTGAGTAAATCGCAATGCCATTACATATGAAAATCCAACCGATCGACGAATCCGA 476
|| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 324 AATTTTTGAGTAAA-CGCAATGCCATTTCATATGAAAATCCAACCGATCGACGATTCCGA 382
Query 477 TGTATCGGAAGAGGTACCTTACCCGGAGACGATGAGACAGATGCCGAAATCGAGGCTGAA 536
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 383 TGTATCGGAAGAGGTACCTTTCCCGGAGACGATGAGACAAATGCCGAAATCGAGGCTGAA 442
Query 537 GCGTCTCTTTGAGCGTCAGTTCACTAATAAGAACGTTTCGGAGAAATTTACCGGCTCAGA 596
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 443 ACGTCTCTTTGAGCGTCAGTTCATTAATAAGAACGTTTCGGAGAAATTTTCCGGCTCAGA 502
Query 597 TGTTGAGGCACCGCTTTCGAGAGGTAACTCTGGAGATTTTGAGCCGAGCTCTGTTTGTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 503 TGTTGAGGCACCGCTTTCGAGAGGTAACTCTGGAGATTTTGAGCCGAGCTCGGTTTGTTT 562
Query 657 GGCCAAGATGGTTCTAAATTTTATGGAGGACAACAACGGCGGCGAGAAACAGCGGTGTGG 716
||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 563 GGCGAAGATGGTTGTAAATTTCATGGAGGATAACAACGGCGGCGATAAACAGCGGTGTGG 622
Query 717 ACGTAGCCGATGTAACTGTTTTAGCGGGAGTGGTACAGAGAGCTCTGATGATGAAACTGA 776
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 623 CCGTAGCCGATGTAATTGCTTTAGCGGGAGTGGTACAGAGAGCTCTGACGATGAAACTGA 682
Query 777 ATG-T-T--------C---T-T-CT---GGTGAAGCTTGTGAGATCCTCAAGAGTTTGGT 818
||| | | | | | || |||||||||| |||||||||||||||||||||
Sbjct 683 ATGGTCTGATGGTTTCAAATGTTCTTCTGGTGAAGCTTTTGAGATCCTCAAGAGTTTGGT 742
Query 819 TCTCTGTAAGAGCATCCGTGTGAGGAATTTGCTGACTGATGTGACCAAGATTGCGGAAAC 878
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 743 TCTCTGTAAGAGCATCCGTGAGAGGAATTTGCTGACCGATGTGACCAAGATTGTTGAAAC 802
Query 879 AAGT 882
||||
Sbjct 803 AAGT 806
Score = 902 bits (488), Expect = 0.0
Identities = 588/634 (93%), Gaps = 15/634 (2%)
Strand=Plus/Plus
Query 947 GTTATGATGCGGCTCTATGCAAATCTCGCTGGGAGAAATCTCCTTCTTGTCCTGCTGGGG 1006
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 805 GTTATGATGCGGCTCTATGCAAATCTCGCTGGGAGAAATCGCCTTCTTGTCCTTCTGGGG 864
Query 1007 AATATGAGTATGTGGATGTGATAATGAAAGGTGAAAGACTGTTAATCGACATAGATTTCA 1066
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 865 AATATGAGTATGTGGATGTGATAATGAAAGGTGAAAGACTGTTGATCGACATAGATTTCA 924
Query 1067 AATCGAAGTTCGAGATTGCTCGTGCAACAAAAACGTATAAGTCGATGCTACAAACTCTGC 1126
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 925 AATCGAAGTTCGAGATTGCTCGTGCAACAAAGACATACAAGTCGATGCTACAAACTCTGC 984
Query 1127 CTTACATATTTGTGGGGAAAGCGGATAGGCTGCAGAAGATCATCGTTCTAATATGTAAAG 1186
||||||| ||||||||||||||||||||||| |||| ||||||| | || ||||||||||
Sbjct 985 CTTACATCTTTGTGGGGAAAGCGGATAGGCTACAGAGGATCATCATCCTTATATGTAAAG 1044
Query 1187 CGGCAAAGCAGAGCTTAAAGAAGAAAGGACTTCATGTACCGCCATGGAGGAGAGCTGAGT 1246
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1045 CGGCAAAGCAGAGCTTGAAGAAGAAAGGACTTCATGTGCCGCCATGGAGGAGAGCTGAGT 1104
Query 1247 ATGTGAAATCCAAGTGGCTGTCTTCTCATGTTCGTGTAGACCAAAACTCAAATGGAGAA- 1305
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||
Sbjct 1105 ATGTGAAATCCAAGTGGCTGTCTTCTCATGTACGTGCAGATCAAAACTCAAATG-AGAAA 1163
Query 1306 G-TCAAGCAGGAATCAGTAGAGGTGATCGCTGAGTCGGTCAGTTCCATAGTCTTCGGTGT 1364
| | ||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||
Sbjct 1164 GAT-AAGCAAGAATCAGTAGATATGATCACTGAATCGGTCGGTTCCATAGTCTTCGGTGT 1222
Query 1365 CTGAAGGTTTATATATATGGCATAACCTTCAAGAGAGGTGTGAGATATAGGAGTATTCGA 1424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1223 CTGAAGGTTTATATATATGGCATAACCTTCTAGAGAGGTGTGAGATATAGGAGTATTCGA 1282
Query 1425 ATCCCTTAA-AGTTTTTGATATTAAGGGTATGTT-ACAGGATCCATGCATACGTAGAAGT 1482
||||||||| |||||||||||| ||||||||||| |||||||||||||| |||| ||||
Sbjct 1283 ATCCCTTAATAGTTTTTGATATCAAGGGTATGTTTACAGGATCCATGCACGCGTAAAAGT 1342
Query 1483 GTCTCTCCCTT--GTCtttttttt----GGGTGTAAGGGAGAGTGTGATCCCACTCTATG 1536
| ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1343 GGCTC-CCCTTTTGTCTTTTTTTTTTTTGGGTGTAAGGGAGAGTGTGATCCAACTCTATG 1401
Query 1537 GTTGTTGCTCTATATGAGGATTAATAGTATTTTA 1570
|||||| |||||| |||||||||||||||||||
Sbjct 1402 GTTGTTTCTCTAT--GAGGATTAATAGTATTTTA 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5