BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38823.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482897 jgi|Araly1|482897|fgenesh2_kg.4__1957__AT2G38823.1 1286 0.0
> Ahg482897 jgi|Araly1|482897|fgenesh2_kg.4__1957__AT2G38823.1
Length=834
Score = 1286 bits (696), Expect = 0.0
Identities = 790/836 (94%), Gaps = 4/836 (0%)
Strand=Plus/Plus
Query 25 AAAAAGGCTATGGATTATCCCCAAGGCATCAACAAAGTCTCCACTTCTGTTATTGATTAT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAAAGGCTATGGATTATCCCCAAGGCATCAACAAAGTCTCCACTTCTGTTATTGATAAT 60
Query 85 GACAAC-AACTTGAAGAAACATAACTTAGAAGCTGAGAAGCGACTCAAAAAGGTGGAACA 143
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GACAACAAAC-TGAAGAAACATAACTTAGAAGCTGAGAAGCGACTCAAAAAAGTGGAACA 119
Query 144 AGATTATCTACACACAAGTCAAAAGTACACAGAAACAAGATCACAGTGGTGGAGCTTAAA 203
||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGATTATCTTCACATAAGCCAAAAGTACACAGAAACAAGATCACAGTGGTGGAGCTTAAA 179
Query 204 TGATGAGAGATACCGCGCTGTCAATAGCTGTTACTGGGCTGCAAACTTCATTAACCGCTG 263
||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||
Sbjct 180 TGATGAGAGATACCGCGCTGTCAGTAGCTGTCACTCTGCTGCAAACCTCATTAACCGCTG 239
Query 264 CAACAAGCTGGTAGAGCAATTGCAGAAGGCTCTTGACAAGCTACCTAAAGGAGAAACAAC 323
|||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||
Sbjct 240 CAACAAGCTGGTAGAGAAATTGCAGAATGCTCTTGACAAGCTACTTAAAGGAGAAACAAC 299
Query 324 CGAAGAAACCATTGATCATAGCCTGCAGTTCTCGTTACTCCAGCAGAAAGCACAATTTCA 383
||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 300 AGAAGAAACCATTGATCATAACCTGCAATTCTCGTTACTTCAGCAGAAAGCACAATTTCA 359
Query 384 AGAGCTAGACTATCATGGAAAATGCGAATTCAGAGAATTTAGCAGAGAGCTAGACTGCAT 443
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGCTAGAGTATCATGGAAAATATGAATTCAGAGAATTTAGCAGAGAGCTAGACTGCAT 419
Query 444 TCGGaaaaaaaTGCCTAGGAGTGACCGCAGAAAAGCTGCACATGATCTCCTAAAAGATGT 503
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 TCGGAAAAAAATGCCTAGAAGTGACCGCAGAAAAGCTGTACATGATCTCCTAAAAGATGT 479
Query 504 TTGTAACCCCACTAGTCATGACAGTTTGAGAAAATCTGTGGAGCTGGAAATAAAAGCTT- 562
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TTGTAACCCCACAAGTCATGACAGTTTGAGAAAATCTGTGGAGCTGGAAATAAAAG-TTC 538
Query 563 TGAAGAAGCTGATCAGAGAGCTTCAAAAAGACTGGGAAGAAAAACAACATGTAAAGCAAT 622
|||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct 539 TGAAGAAGCTGATCAGAGCGCTTCAAAAAGACTGGGAAGAAAAACTACATATAAAGCAAA 598
Query 623 ATACAAAGAATAAATATAAAGATCTCGAACAAAAGGTGAAGCATCTAGAGAAGAAAAAGG 682
|| ||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 599 ATGCAAAGAATATATATACAGATTTTAAACAAAAGGTGAAGCATCTAGAGAAGAAAAAGG 658
Query 683 AACAACTTGCGGGACTGCGGGACGAAGAAAGAAAAATCATGTTCGGGACGAAGAAAACGC 742
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 AACAACTTGCGAGACAGCGGGACGAAGAAAGAAAAATCATGCTCGGGACGAAGAAAACGC 718
Query 743 ATGATAGGAAGATAGGTACATACCCTGAGGCTTATTATATCAAAATGTTGAATGATAAAT 802
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 719 ATGATAGGAAGATAGGTACATATCCTGAGGCTTATTATATCAAGATGTTGAATGATAATT 778
Query 803 TACCATGATGAGTTGTAATGAATTAATTTGGGGATTGATCAAAGCATTAATGTTCC 858
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 779 TACCATGATGGGTTGTAATGAATTATTTTGGGGATTGATCAAAGCATTTATGTTCC 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5