BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38830.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934635 jgi|Araly1|934635|scaffold_402623.1 1461 0.0
> Ahg934635 jgi|Araly1|934635|scaffold_402623.1
Length=1044
Score = 1461 bits (791), Expect = 0.0
Identities = 953/1028 (93%), Gaps = 23/1028 (2%)
Strand=Plus/Plus
Query 6 GGCATCATCATCATCTTCTTCTCAAGTCAAATTCATAGAAAAAGCTCTTCTCGCCACCGG 65
|||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 25 GGCAGCATCATCATCTTCTTCTCAAGTCAGATTCATAGAAAAAGCCCTTCTCGCCACCGG 84
Query 66 CTCCTTCGCTCTATCATACACAGATCCTGATCAAAAATGGCTCATCAGAAAGCACCTAAC 125
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 85 TTCCTTTGCTCTATCCTACACAGATCCTGATCAGAAATGGCTCATCAGAAAGCACCTATC 144
Query 126 TTCACTCCTCCAAGATTATCCAAACTTCGAACTCTCAACCGATACTTTCAACCACAACAA 185
|||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 145 TTCACTACTCCAAGATTATCCAAACTTCGAGCTCTCAACCGATATTTTCAATCACAACAA 204
Query 186 CGGAGCCAAAGTTCAACTCTTTTGCCTTGAAGGATCTCTACGTATTCGAAGCTCCACTAC 245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 205 CGGAGCCAAAGTTCAACTCTTTTGCCTTGAAGGATCTCTACGTATTCGAAACTCCACTAC 264
Query 246 ACAACTCCCAACCGTACAATTAACCATTTGGATTCACGAAAACTACCCATTAACCCCTCC 305
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 265 ACAACTCCCAACCGTGCAATTAACCATTTGGATTCACGAAAACTACCCATTAACGCCTCC 324
Query 306 TCTAGTGTTTATAAACCCCAATTCAATCCCAATTCGCAACAACCACCCATTCATCAATTC 365
||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 325 TCTGGTGTTTATAAACCCTAATTCAATCCCAATTCGCACCAACCACCCATTCGTCAATTC 384
Query 366 TTCAGG-ATACACAAAGTCTAGATACATCGAAACATGGGAACACCCACGATGCAATTTAC 424
|||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TTCAGGCCT-CACAAACTCTAGATACATCGAAACATGGGAACACCCACGATGCAATTTAC 443
Query 425 TCGATTTCATTCGAAACCTCAAGAAAGTTCTCGCTAATGATCACCCATTTCTACACACTG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TCGATTTCATTCGAAACCTCAAGAAAGTTCTCGCTAATGATCACCCATTTCTACACACTG 503
Query 485 ATTCATTAATCCCTACTCGGAATCAATCCGTTTCCAGAACCGAAGCCTTAGATCGATTAG 544
| ||| | |||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 504 AATCA--A-TCCCGACTCGGAATCAATCAGTTTCGAGAACCGAAGCCTTAGATCGATTAG 560
Query 545 CCACGAGTCTCCACTACGACGTTCTAACAATCATGGAGAGATCAGAGGAAGAGATTGAAA 604
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTACGAGTCTCCACTACGACGTTCTAACAATCATGGAGAGATCAGAGGAAGAGATTGAAA 620
Query 605 ACCTATGGAAGCTTCAATCAGAGGTGAAGCAAAGATCTGAATCGGTTAAATCAATCATCA 664
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 621 ACCTATGGAAACTTCAATCAGAGGTGAAGCAAAGATCTGAATCGGTTAAAACAATCATCA 680
Query 665 CTGAGCTTGAGATTGAGAGAGGGACATTAAAGGTGAGAGCTTTGAAGCTCAAGGAAGATT 724
|||||||||||| ||||||| ||||||||||| ||||||||| || ||||| || ||||
Sbjct 681 ATGAGCTTGAGATGGAGAGAGAGACATTAAAGGCGAGAGCTTTAAATCTCAAAGATGATT 740
Query 725 CCGATGTTTTGACGACATGGGTAGAGATGAACTAT--T---T-GA--AATT-GACGTCGA 775
||||||||||| |||||||||| |||| ||||||| | | || || ||||||||
Sbjct 741 CCGATGTTTTGGCGACATGGGTGGAGACGAACTATGATACGTTGATGAAAGCGACGTCGA 800
Query 776 TGGATATGGGAAGAATTGAAGAAATGTTCGAAATTGAATCGGAAGTGGAGGGATTGGCGG 835
|||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||
Sbjct 801 TGGATATGGGAA---TCGAGGAAATGTTTGAAATTGAACCGGAAGTGGAGGGATTGGCGG 857
Query 836 GAGATGACGCCATTGAAGATGTGTTGAGAGTATTGGAAGAAGCTGCGGAGAGAGGAGAGT 895
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 858 GAGATGACGCCATTGAAGATGTGTTGAGAGTACTGGAAGAAGCTGCGGAGAGAGGAGAGT 917
Query 896 TGGAGATTGGTTCGTATCTAAAGCAAGTGAGAGTGTTGGCTAGAGAACAATTCTTCCTTA 955
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 918 TGGAGATAGGTTCGTATCTAAAGCAAGTGAGAGTGTTGGCCAGAGAACAATTCTTCATTA 977
Query 956 AGCATTTATCATCGTTTAAAACTCAGAATTTTCATATTTGAGTATGTTGTGAtttttttt 1015
||||| ||| ||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 978 GGCATT-ATC---GTTTAAAACTC-GAATTTCCATATTTGAGTATGTTGTGAATTTTTTT 1032
Query 1016 gttttttt 1023
|||||||
Sbjct 1033 -TTTTTTT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5