BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38840.1
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482899 jgi|Araly1|482899|fgenesh2_kg.4__1959__AT2G38840.1 2366 0.0
> Ahg482899 jgi|Araly1|482899|fgenesh2_kg.4__1959__AT2G38840.1
Length=2360
Score = 2366 bits (1281), Expect = 0.0
Identities = 1409/1470 (96%), Gaps = 12/1470 (1%)
Strand=Plus/Plus
Query 966 CAGGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGC 1025
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAGGTTAACCAGATTCGGGATTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGC 954
Query 1026 TTACCGCAGCCTCATCTCATGCGTACGAAGCTGTGTGATCTGAAGGATGAGGACCTGGAT 1085
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 955 TTACCACAGCCTCATCTCATGCGGACGAAGCTGTGTGATCTGAAGGATGAGGACCTGGAC 1014
Query 1086 TCTACATATGTTGCAAGGCGTGACCAATTGAAAAAGCTCGTTGCTAGTATTATCCGCCCA 1145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1015 TCTACCTATGTTGCAAGGCGTGACCAATTGAAAAAGCTCGTTGCTAGTATTATCCACCCA 1074
Query 1146 AAGATAGTGCAGGGGAAAACACTAAACGGGAAGGAATTTATTTCTTTCCTGGAACAGATA 1205
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 AAGATAGTGCAGGGGAAGACACTAAATGGGAAGGAATTTATTTCTTTCCTGGAACAGATA 1134
Query 1206 TTGGATGCGTTAAATAAAGGAGAGATCCCATCAACAGGATCACTAGTTGAGGTTTTCAAT 1265
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1135 TTGGATGCGTTGAATAAAGGAGAGATCCCATCCACAGGATCACTAGTTGAGGTTTTCAAC 1194
Query 1266 AAAGATATTGTTGAGAGATGTGTGAAGCTGTACAATGAGAAGATGGTAAGAGTGCGACTA 1325
||||||||||||||| ||||||| |||||||||||||||| ||||||| || || | |||
Sbjct 1195 AAAGATATTGTTGAGCGATGTGTTAAGCTGTACAATGAGAGGATGGTAGGATTGAGGCTA 1254
Query 1326 CCTATGTCCGAAGAATCTCTCCAAAGTGCCCATGAAATGGCGCATAATGAAGCTATCAAA 1385
|||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||| |||
Sbjct 1255 CCTATGTCTGAAGAATCTCTCCAAAGTTCCCATGAAACGGCACATAATGAAGCTATTAAA 1314
Query 1386 GCATTTGATGCACAACATTTTGGCAGACAACATGCAAAGAAATCTGTCGATCAGTTGGAT 1445
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1315 GCATTTGATGCACAGCATTTTGGCAGACAGCATGCAAAGAAATCTGTCGATCAGTTGGAT 1374
Query 1446 GAACAAATGCAGGAGGTATATAAGAATTTTGTTCTTGCAAATGAATACCAATCGTCGAAG 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GAACAAATGCAGGAGGTATATAAGAATTTTGTTCTTGCAAATGAATACCAATCGTCGAAG 1434
Query 1506 CTCTGTGAGGCGCTATATACAAGTTGTGAAGATGACATGGACCACTTACAGGCTCTCCGA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTCTGTGAGGCGCTATATACAAGTTGTGAAGATGACATGGACCACTTACAGGCTCTCCGA 1494
Query 1566 CTCCCTTCCATGGCTAAATTTAATGCAGGTTTTGTGTACTGCAACAAAACGTTTGAGCAG 1625
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1495 CTCCCTTCCATGGCTAAATTTAATGCAGGTTTCGTGTACTGCAACAAAACTTTTGAGCAG 1554
Query 1626 CAATGTGTTGGTCCTTCAAAACAAAATTATGAGCAAAGATTAACTAAGATGATGGGAAAG 1685
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1555 CAATGTGTTGGTCCTTCAAAACAAAACTATGAGCAAAGATTAACTAAGATGATGGGAAAG 1614
Query 1686 TCACGGTCTTTGTTCATCAAAGAATACAATAACCGACTGTTCAACTGGCTGGTTGGGTTC 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCACGGTCTTTGTTCATCAAAGAATACAATAACCGACTGTTCAACTGGCTGGTTGGGTTC 1674
Query 1746 TCTCTTGTAATGGTGGTTGTGGGCCGGTTTATCATAAAATTCATTTTATTAGAAATGGCG 1805
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1675 TCTCTTGTAATGGTGGTTGTGGGCCGGTTTATTATAAAATTCATTTTATTAGAAATGGCG 1734
Query 1806 GCGTGGATACTTTTCATATTCTTGGAGACATACACAAGGATGTTCTGGACAGCAGAAGCT 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1735 GCGTGGATACTTTTCATATTCTTGGAGACATACACAAGGATGTTCTGGACAGCAGAGGCT 1794
Query 1866 CTTTATTACAACCCAGTCTGGCATTTCATCGTTGGGACATGGGAAAATGTCGTGTATAGT 1925
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1795 CTGTATTACAACCCAGTCTGGCATTTCATCGTTGGAACATGGGAAAATGTCGTGTATAGT 1854
Query 1926 CCTGTTCTCGACTTGGACAGATGGGCGATTCCTATAGTCTGCATAATTGCACTTTGTGTG 1985
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CCCGTTCTCGACTTGGACAGATGGGCGATTCCTATAGTCTGCATAATTGCACTTTGTGTG 1914
Query 1986 CTATATTGGCGGTGTTATGGAAAGAGGAAACACGGGGCTCGCTGGCTTCTTCCGCTGTAC 2045
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CTTTATTGGCGGTGTTATGGAAAGAGGAAACACGGGGCTCGCTGGCTTCTTCCGCTGTAC 1974
Query 2046 AACAACCAGAAGAATGGCCGGAATAGGGAACGGTCTGAGTAAAAACATGTTCCTCGTCGT 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1975 AACAACCAGAAGAATGGCCGGAATAGGGAACGGTCTGAGTAAAAACATGTTCCTCCTCAT 2034
Query 2106 TCC-CATTATACTTATAGCATCTTCTCGGGCATGCTCGTTGTTTTTATCATCAGAAGCTC 2164
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 TTCGC-TTATACTTATAGCATCTTCTCGGGCATGCTCGTTGTTTTTATCATCAGAAGCTC 2093
Query 2165 TCTGCCCGTTACTACCAATTTTTTGGACGCA-G-A-A-GAATGAAAGAGGATGATTGATC 2220
||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 2094 TCTGCCCGTTACTACCAATTTTTTGGACGCATGCAGAAGAATGAAAGAGGATGATTGATC 2153
Query 2221 GATCCAAGTTGGTTTGATTGTACCATTTACATAGAATGCCTTTGTAATGTTTAAC-TCT- 2278
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
Sbjct 2154 GATCCAAGTTGGTTTGATTGTACCATTTACATATAATGTCTTTGTAATGTTTAACGT-TA 2212
Query 2279 TCATATACATAAATGGTTTTATACTCTCTCAATCACAGCTAATTTGAGCTAACAAACCTT 2338
| |||||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct 2213 T-ATATACATAAGTGGTTTTATACTCTCCCAATCACGGCTAATTTTAGCTAGCAAACCTT 2271
Query 2339 AGAGTCtgtttttattttgtttatttattcaaagtagtttg-tttatgttggtatattat 2397
||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 2272 AGAGTCTATTTTTATTTTATTTATTTATTCAAAGTAGTTTGGTTT-TGTTGGTATGTTAT 2330
Query 2398 aaatttatGAAAGCAGAACCTTCGTGTTGC 2427
||| |||||||||||||| |||||||||||
Sbjct 2331 AAAATTATGAAAGCAGAATCTTCGTGTTGC 2360
Score = 826 bits (447), Expect = 0.0
Identities = 467/477 (98%), Gaps = 0/477 (0%)
Strand=Plus/Plus
Query 279 ATGGAGATTCCTCGCCGGACCTTTGTTTtcttcttctctctttgtctcttgtcgtcaacg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATTCCTCGCCGGACCTTTGTTTTCTTCTTCTCTCTTTGTCTCTTGTCGTCAACG 60
Query 339 tctctctcCATCGATAATTTTCACCAAGCTTTTCCTATTGTTGAACCTGCTCCGGGTCAT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCTCTCTCCATCGATAATTTTCACCAAGCTTTTCCTATTGTTGAACCTGCTCCAGGTCAT 120
Query 399 ACAAAGCTTCAGCTTAGCAGAGAAGGTCTGGAAGCAATTAGCAGAATTACAACTCCTATT 458
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ACAAAGCTTCAGCTTAGTAGAGAAGGTTTGGAAGCAATTAGCAGAATTACAACTCCTATT 180
Query 459 TCTGCTGTTGCGGTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTT 518
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 181 TCTGCTGTTGCGGTGATTGGCCCATATAGGTCTGGAAAATCATTTCTACTCAATCAGCTT 240
Query 519 CTTTCTCTTTCTTGTTATGAAGGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAA 578
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTTTCTCTTTCCTGTTATGAAGGTTTTGGTGTTGGACATATGCGTGATACCAAAACAAAA 300
Query 579 GGTATTTGGGTCTGGGGAACACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTA 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTATTTGGGTCTGGGGAACACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTA 360
Query 639 ATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGG 698
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTTACCTCGACACTGAAGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGG 420
Query 699 ATTTTTGCCCTGGCAACGGTTATGAGTTCTGTGCTTATCTATAATCTGCCTGAAACT 755
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 ATTTTTGCTCTGGCAACGGTTATGAGTTCTGTTCTTATCTATAATCTGCCTGAAACT 477
Score = 132 bits (71), Expect = 1e-29
Identities = 131/155 (85%), Gaps = 23/155 (15%)
Strand=Plus/Plus
Query 756 ATCCGTGAAGCTGATATTTCTCGGCTCTCCTTTGCTGTTGAGCTTG-CGGAAGAATTTTA 814
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 610 ATCCGTGAAGCTGATATTTCTCGGCTCTCCTTTGCTGTTGAG-TTGGCAGAAGAATTTTA 668
Query 815 TGGAAGAGTAAAGG-----------G---T-G------AAGATGTTGCTTTTGAACCGTC 853
|||||||||||||| | | | ||||||||||||||||||||||
Sbjct 669 TGGAAGAGTAAAGGTACACCCTAACGAAATTGCTGGTGAAGATGTTGCTTTTGAACCGTC 728
Query 854 AAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGC 888
|||||||||||||||||||||||||||||||||||
Sbjct 729 AAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGC 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91492768490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5