BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38860.2
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482901 jgi|Araly1|482901|fgenesh2_kg.4__1961__AT2G38860.2 2141 0.0
Ahg949820 jgi|Araly1|949820|scaffold_801707.1 241 1e-62
> Ahg482901 jgi|Araly1|482901|fgenesh2_kg.4__1961__AT2G38860.2
Length=1334
Score = 2141 bits (1159), Expect = 0.0
Identities = 1280/1338 (96%), Gaps = 9/1338 (1%)
Strand=Plus/Plus
Query 1 TTCAATGCACACAAACATTTACCCAAAATGGCATCGGCGGTTCAGAAATCAGCGTTGCTC 60
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTCAATACACACAAACATTTA-CCAAAATGGCATCGGCGGTTCAGAAATCGGCGTTGCTC 59
Query 61 TTATGTGGAGACTACATGGAAGCCTATGAAACGATTGTTCCTCTCTATGTTCTCCAATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTATGTGGAGACTACATGGAAGCCTATGAAACGATTGTTCCTCTCTATGTTCTCCAATCG 119
Query 121 TTTGGGGTTAGCGTTCATTGCGTTTCACCCAACCGCAACGCCGGCGATCGCTGCGTTATG 180
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 120 TTTGGCGTTAGCGTTCATTGCGTTTCACCCAACCGCACCGCCGGTGATCGCTGCGTTATG 179
Query 181 TCTGCCCACGATTTCTTGGGCCTCGAGCTATACACCGAGCTTGTCGTTGACCAGTTGACT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 TCTGCCCACGATTTCTTGGGCCTCGAGCTATACACCGAGCTTGTAGTTGACCAGTTGACT 239
Query 241 TTAAACGCAAACTTCGATGACGTCACTCCGGAGAATTACGACGTCATCATCATCCCAGGA 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTAAACGCCAATTTCGATGACGTCACTCCGGAGAATTACGACGTCATCATCATCCCAGGA 299
Query 301 GGCCGATTCACGGAGCTTCTCAGCGCCGACGAGAAATGCGTTGACCTCGTGGCGCGATTC 360
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GGACGATTCACGGAGCTTCTCAGCGCCGACGAGAAATGCGTCGACCTCGTGGCGCGATTC 359
Query 361 GCCGAATCCAAGAAGCTGATCTTCACTAGCTGTCATAGCCAGGTTATGCTGATGGCGGCC 420
||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||
Sbjct 360 GCCGAATCCAAGAAGCTCATCTTCACTAGCTGCCACAGCCAGGTTATGCTTATGGCTGCC 419
Query 421 GGAATCCTCGCCGGTGGTGTGAAATGCACGGCGTTTGAAAGCATAAAGCCTTTGATCGAA 480
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GGAATTCTCGCCGGTGGTGTGAAATGCACGGCGTTTGAAAGCATAAAGCCTCTGATCGAA 479
Query 481 CTCTCCGGCGGTGAGTGGTGGCAACAGCCTGGGATTCAGAGCATGTTCGAGATCACCGAT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCTCCGGCGGCGAGTGGTGGCAACAGCCTGGGATTCAGAGCATGTTCGAGATCACCGAT 539
Query 541 TGCGTTAAAGACGGGAATTTCATGAGTACGGTTGGTTGGCCAACGCTTGGTCACGGCATT 600
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 540 TGCGTTAAAGACGGGAATTTCGTGAGTATGGTTGGTTGGCCAACGCTTGGTCACGGTATT 599
Query 601 AAGCTTTTGCTTGAATCTCTTGGTGGCAAAGTCT-GTAGCTTGGAGAAGAAGCAAGCTTC 659
||| ||||||| ||||||||||||| |||||||| | |||||| ||||||| ||||||||
Sbjct 600 AAGGTTTTGCTCGAATCTCTTGGTGCCAAAGTCTCG-AGCTTGAAGAAGAATCAAGCTTC 658
Query 660 TGTGCTTTTCCTCATTGGGGACTATGTAGAAGATTATGGGATCAATGTACCGTTTAGAGC 719
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 TGTGCTTTTCCTAATTGGGGACTATGTAGAAGATTATGGGATCAATGTACCATTTAGAGC 718
Query 720 ACTACAAGCTTTAGGTTGTAAAGTGGATGCTGTGACACCGAACAAGAAGAAGGGAGAAGT 779
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 719 ACTACAAGCTTTAGGATGTAAAGTGGATGCAGTGACACCGAATAAGAAGAAGGGAGAAGT 778
Query 780 GTGTGCAACGGCGGTTTATGACCTTGAGGATGGACGGCAGATTCCTGCAGAGAAGCGTGG 839
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 779 GTGTGCAACGGCGGTTTATGACCTCGAGGAAGGACGGCAGATTCCTGCAGAGAAGCGTGG 838
Query 840 ACATAACTTCTTTGTGACTGCATCGTGGGATGATATATGTGTGGATGATTATGACTGTGT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 ACATAACTTCTTTGTGACTGCATCGTGGGATGATATATGTGTGGATGATTATGATTGTGT 898
Query 900 AGTGGTTCCAGGAGGGAGATCACCTGAGCTATTGGTGATGAATGAAAAGGCTGTTGCTTT 959
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGTGGTTCCAGGTGGGAGATCACCTGAGCTATTGGTGATGAATGAAAAGGCTGTTGCTTT 958
Query 960 GGTTAAGA-GTTTTGCAGAGAAAGATAAGGTGTTTGCAGCTATTGGACAGGGGAAATTGC 1018
|||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GGTTAATAAGTTT-GCAGAGAAAGATAAGGTTTTTGCAGCTATTGGACAGGGGAAATTGC 1017
Query 1019 TTCTTGCAGCCACTGGTGTTCTTAAGGGGAAGCGATGCGCGAGTGGGAAAGGGATGAAGG 1078
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTCTTGCAGCCACTGGTTTTCTTAAGGGGAAGCGATGCGCGAGTGGGAAAGGGATGAAGG 1077
Query 1079 TGATGGTGAAGGTGGCTGGAGGTGAGGCTGTGATGGAAAAGGGATGTGTAACTGATGGGA 1138
||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 1078 TGATGGTGAAGGTGGCTGGCGGTGAGGCTGTGATGGGAAAGGGATGCGTAACTGATGGGA 1137
Query 1139 AGGTTGTGACGGCAGCATCAGCCACGGATCTGCCTGCCTTTTTGTTTGATTTATCAACTG 1198
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 AGCTTGTGACGGCTGCATCAGCCACGGATCTGCCTGCCTTTTTGTCTGATTTATCAACTG 1197
Query 1199 CTCTTGGTCTAACTGTCATGTTCTAAGATTTTGCAACTAAAAAACATAAAA--GATAGTT 1256
|||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1198 CTCTTGGTCTCACTGTCATGTTCTAAGATTTTGCAACCAAAAA-CATAAAAAAGATAGTT 1256
Query 1257 TGAGTAATAAAATCATATCTTCAATTTGCTCAATTGAAGTGAAAAG-AAAAACAAAAGAG 1315
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 TGAGTAATAAAATCATATCTTCAATTTGCTCAATTGAAGTGAAAAGGAAAAACAAAAGAG 1316
Query 1316 CTCGATTGTAGTGTCTCT 1333
||| |||||||| |||||
Sbjct 1317 CTCTATTGTAGTCTCTCT 1334
> Ahg949820 jgi|Araly1|949820|scaffold_801707.1
Length=280
Score = 241 bits (130), Expect = 1e-62
Identities = 219/258 (85%), Gaps = 21/258 (8%)
Strand=Plus/Plus
Query 684 TGTAGAAGATTATGGGATCAATGTACCGTTTAGAGCACTACAAGCTTTAGGTTGTAAAGT 743
|||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 44 TGTAGAAGATTATGGGATCAATATACCATTTAGAGCACTTCAAGCTTTAGGATGTAAAGG 103
Query 744 GGATGCTGTGACACCGAACAAGAAGAAGGGAGAAGTGTGTGCAACGGCGGTTTATGACCT 803
|||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 104 GGATACAGTGACACCGAATAAGAAGAAGGGAGAAGTGTGTGCAACGGTGGTTTATGACCT 163
Query 804 TGAGGATGGACGGCAGATTCCTGCAGAGAAGCGTGGACATAACTTCTTTGTGACTGCATC 863
||||||| | || | | |||||| | ||||||||||||||||||
Sbjct 164 CGAGGATGAA----AG---C-T-----------TGGACA-A-CTTCTTTGTGACTGCATC 202
Query 864 GTGGGATGATATATGTGTGGATGATTATGACTGTGTAGTGGTTCCAGGAGGGAGATCACC 923
|||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||| ||
Sbjct 203 GTGGGATGGTGTATGTGTGGATGATTATAACTGTGTAGTGCTTCCAAGAGGGAGATAACG 262
Query 924 TGAGCTATTGGTGATGAA 941
||||||||||||||||||
Sbjct 263 TGAGCTATTGGTGATGAA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5