BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38880.8

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934641 jgi|Araly1|934641|scaffold_402629.1                        562    2e-159


> Ahg934641 jgi|Araly1|934641|scaffold_402629.1
Length=472

 Score =  562 bits (304),  Expect = 2e-159
 Identities = 322/331 (97%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  101  AATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAG  160
            |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct  26   AATGGCGGATACGCCTTCGAGCCCGGCCGGAGATGGCGGAGAAAGCGGCGGCTCCGTTAG  85

Query  161  GGAGCAGGATCGATACCTTCCTATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCC  220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86   GGAGCAGGATCGATACCTTCCTATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCC  145

Query  221  TCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTCAGGAATGCGTCTCTGAGTT  280
            ||||||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct  146  TCCTAATGGAAAGATTGGAAAAGATGCTAAGGACACTGTTCAGGAATGTGTTTCTGAGTT  205

Query  281  CATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGT  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  CATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGT  265

Query  341  GAATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACC  400
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  266  GAATGGTGATGATTTGTTATGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACC  325

Query  401  TCTAAAGATATACCTAGCGAGGTACAGGGAG  431
            |||||||||||||||||||||||||||||||
Sbjct  326  TCTAAAGATATACCTAGCGAGGTACAGGGAG  356


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 100/105 (95%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  499  AGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTG  558
            |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct  355  AGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGCGGAGATGGATCTAATAGAGATGCAG  414

Query  559  GTGGCGGTGTTTCTGGTGAAGAAATGCCGAGCTGGTAAAAGAAGT  603
            |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct  415  GTGGAGGTGTTTCTGGTGAAGAAATGCCGAGCTGGTGAAAGAAGT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32671339869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5