BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38890.2
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482910 jgi|Araly1|482910|fgenesh2_kg.4__1970__AT2G38890.1 1018 0.0
> Ahg482910 jgi|Araly1|482910|fgenesh2_kg.4__1970__AT2G38890.1
Length=956
Score = 1018 bits (551), Expect = 0.0
Identities = 724/803 (90%), Gaps = 30/803 (4%)
Strand=Plus/Plus
Query 55 AAAGAGAGCAAATGGAACCATCGCAAAAGCTTGGCCTGGGACACTGCTTTTTCCACCAAC 114
|||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAGAGAGTAAAAGGAATCATCGCAAAAGCTTGGCCTGGGACACTGCTTTTTTCACCAAC 60
Query 115 CCTGGAGTGTTAGATCCTGAAGAATTGTTTGGGAGCTTAAAGATTGACGAGAATGAGATT 174
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 61 CCTGGAGTGTTAGATCCTGAAGAATTATTTGGGAGCTTAAAGATTGACGAGAATGAGACT 120
Query 175 GAAGTTGAAGTAAATCAT--------AATC-ACACACTTCCTTCGAAAACCGATGCTCGT 225
|| ||||||||||||||| |||| | |||||||||||| ||||||||||||||
Sbjct 121 GATGTTGAAGTAAATCATAAGCACACAATCAAGACACTTCCTTCGGAAACCGATGCTCGT 180
Query 226 CCAAGTTTTGCTTGGGACAATGCtttttttACCGATCCAGGTGTTCTTGATGCTGAGGAG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAAGTTTTGCTTGGGACAATGCTTTTTTTACCGATCCAGGTGTTCTTGATGCTGAGGAG 240
Query 286 TTGTGTCTTGTGAACAATGGTTTCACCAGTAACACGCAGCTTCGTAAGTCTGC---T--G 340
|||| |||| |||||||||| |||||||||||||| |||||||||||||||| | |
Sbjct 241 TTGTCTCTTATGAACAATGGCTTCACCAGTAACACAAAGCTTCGTAAGTCTGCAGATTCG 300
Query 341 AT-ACGACGACAACTCAAGGAAGCAGATTTTCTGTGGCCAGCATTGAGTTTGATCTGTTC 399
|| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 301 ATGACGACGACAACTCAAGGAAGCAGATTTTCTGTAGCGAGCATTGAATTTGATCTGTTT 360
Query 400 CACGACCTGAGAGCCTCTTTACGTAATTCACCGAATGTGAAGCAGACAGTAACTCAAGAG 459
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 361 CACGAGTTGAGAGCCTCTTTACGTAATTCACCGAATGTGAAGCAGACAGTGACTCGAGAG 420
Query 460 ACCCATCGTAAGTTACCAGATGGTATAAAGAGGACTAAAGGATACAAACAGAAAGTTCAA 519
| ||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||
Sbjct 421 AGCCAGCGTAAGTTACCAGATGGTAAAAAGAGGACTAAAGGGTCCAAACAGAAAGATCAA 480
Query 520 CCTTTGAGTCTCATTCCTCAACCAAAAGTGtcttcttcttcttcttcttctttttctttA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 481 CCTTTGAGTCTCATTCCTCAACCAAAAGTGTCTTCTTCTTCTTCTTCTTCTT---CATT- 536
Query 580 TCATCCATCTCCAAATCTTTGACTCCTAGTCAAGCTATACGCGAGAAGAAATGTGTTGCA 639
|| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 537 -CA-CCATCTCCAAACCTTTGACTCCTTGTCAAGCTACCCGCGAGAAGAAATGTGTTGCG 594
Query 640 AGTGAACTCGAGAGGAA-TAAGGAAAAACACAAGAATCATGGTTTTGAAGAACAATCTGG 698
|||||||||| || || || || |||||||||||||||||| |||||||||||||||||
Sbjct 595 AGTGAACTCG-GAAAAACTAGGGGAAAACACAAGAATCATGGGTTTGAAGAACAATCTGG 653
Query 699 ATCGAAA-TCTAACATAAGGTCATCGTATTCAAGTTACGCAGTCAAGGACTTGACATCAT 757
||| ||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 654 ATC-AAAGTCTAACATAAGGTCATCTTATTCAAGTTACGCATTCAAGGATTTGACATCAT 712
Query 758 CCTACTCTGGTCTGAGGTTACCACTTCCAAAGATGGGATTTTTCGACTCGCA-AACAGA- 815
||| ||||||||||||||||||||||||||||||| | |||||||||||| | ||| ||
Sbjct 713 CCTCCTCTGGTCTGAGGTTACCACTTCCAAAGATGAGTTTTTTCGACTCGGAGAACGGAG 772
Query 816 AGAA-GAAGACACA-AATCCAAA 836
|||| ||| ||| | || |||||
Sbjct 773 AGAAAGAAAACAGAGAA-CCAAA 794
Score = 134 bits (72), Expect = 2e-30
Identities = 90/98 (92%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 807 GCAAACAGAAGAAGAAGACACAAATCCAAACTTGAGA---CTTCTTCTACACCAGAAAAC 863
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 805 GCAAACAGAAGAAGAAGACACAATTCCAAACTTGAGACTTCTTCTTCTACACCAGAAAAC 864
Query 864 CGCAGCATTCTGGGACAACGCAAAACACGAAAGTGAAA 901
|||||||||||||| |||||||| | |||||||||||
Sbjct 865 CGCAGCATTCTGGGGCAACGCAAGATGCGAAAGTGAAA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5