BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38900.2

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901814 jgi|Araly1|901814|Al_scaffold_0004_2464                    226    1e-58


> Ahg901814 jgi|Araly1|901814|Al_scaffold_0004_2464
Length=222

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 175/201 (87%), Gaps = 2/201 (1%)
 Strand=Plus/Plus

Query  140  ATATTGGGAAGAACTCATGGCCGGAGCTTTTAGGAACAAATGGAGACTATGCGGCTTCGG  199
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||
Sbjct  23   ATATTGGGAAGAACTCATGGCCGGAGCTTTTGGGAACAAATGGAGACTATGCGGCGGCGG  82

Query  200  TGATAAAAGGAGAGAACTCGAGCCT-CAACGTTGTCGTGGTTTCGGATGGAAATTATGTG  258
            ||||||||||||||||||||||||| ||| |||  |||| ||| || ||||| |   |||
Sbjct  83   TGATAAAAGGAGAGAACTCGAGCCTTCAA-GTTAACGTGATTTTGGTTGGAACTCCGGTG  141

Query  259  ACTGAAGACCTCAGTTGCTACCGCGTTAGGGTTTGGGTTGACGAAATCCGTATCGTTGTC  318
            |||   |||||||| ||| ||||||||||||| |||||| | |||| |||| |||| |||
Sbjct  142  ACTCCGGACCTCAGGTGCGACCGCGTTAGGGTGTGGGTTAATGAAAGCCGTCTCGTCGTC  201

Query  319  AGAAACCCAACCGCCGGCTAG  339
            | |||||||||||||||||||
Sbjct  202  AAAAACCCAACCGCCGGCTAG  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18658083021


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5