BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38905.1
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482911 jgi|Araly1|482911|fgenesh2_kg.4__1971__AT2G38905.1 399 4e-111
> Ahg482911 jgi|Araly1|482911|fgenesh2_kg.4__1971__AT2G38905.1
Length=287
Score = 399 bits (216), Expect = 4e-111
Identities = 240/251 (96%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 1 TCTGTTTCTCTTCTTCTCCAAAACATCAAAAATGGGATCAGAAACTTTCTTGGAAATTAT 60
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 TCTCTTTCTCTTCTTCTCCAAAACATCAACAATGGGATCAGAAACTTTCTTAGAAATTAT 60
Query 61 TCTGGCGATTCTTCTACCTCCCGTCGGCGTTTTCCTTCGATATGGTTGTGGGGTAGAGTT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TCTGGCGATTCTTCTACCTCCCGTCGGCGTTTTCCTCCGATATGGTTGTGGGGTAGAGTT 120
Query 121 CTGGATCTGTCTCTTGTTGACGATACTGGGTTACATCCCTGGGATCATCTATGCTATCTA 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CTGGATCTGTCTGTTGTTGACGATACTGGGTTACATTCCTGGGATCATCTATGCTATCTA 180
Query 181 CGTTCTTGTCGGATGATGACCAAATTCTCTT---GTAAATTTTTCATAATCTTTATTTAG 237
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 181 CGTTCTTGTTGGATGATGACCAAATTCTCTTCTTGTAAATTTTTCATAATCTTTATCTAG 240
Query 238 CCTTTGTTGTT 248
|||||||||||
Sbjct 241 CCTTTGTTGTT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11103276399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5