BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38920.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321588 jgi|Araly1|321588|fgenesh1_pm.C_scaffold_4001645 1280 0.0
> Ahg321588 jgi|Araly1|321588|fgenesh1_pm.C_scaffold_4001645
Length=1002
Score = 1280 bits (693), Expect = 0.0
Identities = 909/1013 (90%), Gaps = 16/1013 (2%)
Strand=Plus/Plus
Query 227 ATGAAGTTTGGTGAGACGTTCACGGAATATCTACATGGAGAAGAGGAATGGTTCCTGGAG 286
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1 ATGAAGTTTGGAGAGACGTTTACGGAATATCTACATGGAGAAGAGGAGTGGTTCCTAGAA 60
Query 287 AAGTGTCG-CTTCGTTGAATATAAGAAACTTAAGAAAGTGTTGAAGAAGTGCAAGACATG 345
|| ||||| | | || ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 61 AAATGTCGTCAT-GTAGAATACAAGAAACTCAAGAAAGTGTTGAAGAAATGCAAGACATG 119
Query 346 TAACTCTACAAAATCTGATGATGGACAAATCATCCCATCTGCTACTTCTTCATCTTTGTC 405
|||||| |||| |||| |||||| ||| || || |||| |||| | | ||||||||
Sbjct 120 TAACTCCACAAGATCTAATGATGAACACATTGTCTCATCGGCTA---C-T--TCTTTGTC 173
Query 406 TGATTCATGCGAATGCAAAGCTTGCCCTTGGTGTGATCAGATGTTCTTCGAGGAGCTGAT 465
|||||||||| ||||| || ||||| ||||||||||| |||||||||| | |||||||||
Sbjct 174 TGATTCATGCCAATGCCAATCTTGCTCTTGGTGTGATGAGATGTTCTTTGCGGAGCTGAT 233
Query 466 GAAAGAAG-CTACTGACATAGCGGGATTTTTCAGGTCAAGAGTGAGGCATCTTCTCCATC 524
|||||||| || || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 GAAAGAAGTTTA-TGGCATAGCGGGATGCTTCAGGTCAAGAGTGAGGCATCTTCTCCATC 292
Query 525 TTCATGTAGCCACTGGGATGCAGAGATACATGATTCGCCTACGCAGATGCTTCACTGACG 584
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 293 TTCATGTAGCCACTGGGATGCAGAGATACATGATGAGTCTACGCAGATGCTTCACGGATG 352
Query 585 AAAAACAAGCTTTAGTCCAAGAGGGCCAAATCTTGATTCAATACATCACCATGAATGCAA 644
|||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 353 AAAAACAAGCTTTACTCCAAGAGGGCCAATTCTTGATTCAGTACATCACCATGAATGCGA 412
Query 645 TTGCTATCCGTAAAATCCTCAAGAAATATGACAAGGTGCATAGCTCAGAGAATGGGAAGA 704
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 413 TTGCCATCCGTAAAATCCTCAAGAAATATGACAAGGTGCATAGCTCAGTGAATGGTAAGA 472
Query 705 ATTTCAAGTTGAAAATGCGAGCGGAGCGCATAGAGCTCTTGCACTCACCATGGCTCATAG 764
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 473 AATTCAAGTTGAAAATGCGAGCGGAGCGCATAGAGCTTTTGCACTCACCTTGGCTCATAG 532
Query 765 AACTTGGAGCCTTTTATCTCAACT-CTGGGCTAGATAATGTTGGAAACTTCAAGAATTCG 823
||||||||||||||||| |||| | |||| || || || ||||||||||||||||| |||
Sbjct 533 AACTTGGAGCCTTTTATATCAA-TACTGGACTTGACAAAGTTGGAAACTTCAAGAACTCG 591
Query 824 TTTGGCCGTGTCGCTTGTGAAAATCTCAACGAAGATCAACC-AGTGCTAAAACTCATGCT 882
|||||||| ||| | ||||| |||||||||| ||||| || | || | ||||||||||
Sbjct 592 TTTGGCCGCGTCTCCTGTGATTATCTCAACGACGATCAGCCTA-TGATGCAACTCATGCT 650
Query 883 GCCTAACTCAATAGAGCTGGAGTATGATCTAACTTGTGCAATCTGCCTCGAAACGGTATT 942
|||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 651 GCCTAATTCAATAGAGCTCGAGTTTGATCTAACTTGCGCAATCTGCCTCGAAACGGTATT 710
Query 943 CAATCCCTATGCTTTAAAGTGCGGTCACATATTTTGTAACTCGTGTGCATGCTCGGCTGC 1002
||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 711 CAATCCCTACGCTTTAAAGTGCGGTCACATATTTTGTAAAGCATGTGCGTGCTCGGCTGC 770
Query 1003 TTCTGTATTGATTTTCCAAGGCATTAAAGCAGCGCCCCGACA-TTCAAAATGTCCCATCT 1061
||||||| ||||||||||||| ||||||||||| || || | ||| |||||||||||||
Sbjct 771 TTCTGTAATGATTTTCCAAGGGATTAAAGCAGCACCA-GAAAATTCCAAATGTCCCATCT 829
Query 1062 GCAGAGAGGCTGGAGTTTACGCGGAAGCAGTTCACATGATCGAGCTGCATCTTCTTTTAA 1121
||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 830 GCAGAGAGGTTGGAGTTTACGCAGAAGCAGTTCACATGATTGAGCTGCATCTTCTCTTAA 889
Query 1122 AGACACGAAGCAAAGAATATTGGAAGGAGAGGATGATGAATGAACGGTCTGAGATGGTGA 1181
||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 890 AGATAAGAAGCAAAGAGTATTGGAAGGAGAGGATGATGGGTGAACGGTCTGAGATGGTGA 949
Query 1182 AGCAGTCGAAGATGTTTTGGAATGAACAGACGAAGCATATGATCGGTTATTAA 1234
||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 950 AGCAGTCTAAGATGTTTTGGAATGAACAGACGAAGCATATGATCGGTTACTAA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5