BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38960.3
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321591 jgi|Araly1|321591|fgenesh1_pm.C_scaffold_4001648 2187 0.0
> Ahg321591 jgi|Araly1|321591|fgenesh1_pm.C_scaffold_4001648
Length=1545
Score = 2187 bits (1184), Expect = 0.0
Identities = 1329/1400 (95%), Gaps = 6/1400 (0%)
Strand=Plus/Plus
Query 57 ATGGCGGAGACGGACGTCGGAAGTGTGAAGGGGAAGGAGAAAGGATCGGGAAAGCGCTGG 116
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGACGGACGTCGGAAGCGTGAACGGAAAGGAGAAAGGATCGGGAAAGCGCTGG 60
Query 117 ATTTTGCTGATCGGAGCTATAGCTGCCGTTCTGTTAGCCGTCGTGGTCGCTGTGTTTTTG 176
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 ATTTTGCTGATCGGAGCTATAGCTGCCGTTCTATTGGCCGTCGTGGTCGCTGTGTTTTTG 120
Query 177 AATACTCAGAATTCGTCGATTTCTGAATTTACCGGAAAAATATGCAATTGCCGTCAGGCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATACTCAGAATTCGTCGATTTCTGAATTTACCGGAAAAATATGCAATTGCCGTCAGGCT 180
Query 237 GAGCAGCAGAAGTACATTGGGATAGTTGAAGATTGTTGTTGTGATTATGAAACTGTGAAT 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCAGCATAAGTACATTGGGATAGTTGAAGATTGTTGTTGTGATTATGAAACTGTGAAT 240
Query 297 CGGCTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCATTTTAC 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGACTAAACACGGAAGTGTTGAATCCATTGCTTCAGGACCTTGTTAAGACACCGTTTTAC 300
Query 357 AGATATTTCAAGGTTAAACTGTGGTGTGATTGCCCGTTTTGGCCTGATGATGGCATGTGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATATTTCAAGGTTAAACTGTGGTGTGATTGCCCGTTTTGGCCTGATGATGGCATGTGC 360
Query 417 CGGTTAAGAGACTGCAGTGTTTGTGAATGTCCTGAAAGCGAGTTCCCTGAAGTATTTAAG 476
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 CGGTTAAGAGACTGTAGTGTTTGTGAATGTCCTGAAAGCGAGTTCCCTGAAATATTTAAG 420
Query 477 AAGCCATTAAGTCAATACAATCCTGTTTGTCAAGAGGGGAAACCGCAAGCTACTGTTGAT 536
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 421 AAGCCATTAAGCCAATACAATCCTGTTTGTCAAGAAGGGAAACCACAAGCTACTGTTGAT 480
Query 537 CGTACCTTGGATACTAGAGCTTTTAGGGGTTGGACAGTCACAGACAATCCCTGGACCAGT 596
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 481 CGTACCTTGGATACTAGAGCTTTCAGGGGTTGGACAGTCACAGACAATCCCTGGACAAGT 540
Query 597 GATGATGAAACTGACAATGATGAAATGACATATGTTAATCTTCGGCTTAATCCTGAACGG 656
||||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||| ||||||
Sbjct 541 GATGATGAAACGGACAACGATGACATGACATATGTTAATCTTCTGCTAAATCCCGAACGG 600
Query 657 TACACTGGCTATATTGGCCCATCAGCTAGAAGGATATGGGAAGCTATATACTCTGAGAAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACACTGGCTATATTGGCCCATCAGCTAGAAGGATATGGGAAGCTATATACTCTGAGAAC 660
Query 717 TGTCCCAAACATACATCTGAAG-GATCTTGCCAAGAAGAGAAGATCTTGTACAAATTGGT 775
|||||||||||||||||||||| | || |||| |||||| ||||| ||||||||||||||
Sbjct 661 TGTCCCAAACATACATCTGAAGAG-TCGTGCCGAGAAGAAAAGATATTGTACAAATTGGT 719
Query 776 TTCTGGTCTTCACTCATCCATTTCAGTTCATATCGCTTCAGATTATTTACTTGATGAAGC 835
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 CTCTGGTCTTCACTCATCTATTTCAGTTCATATAGCTTCAGATTATTTACTTGATGAAGC 779
Query 836 TACAAACTTGTGGGGTCAAAACCTGACGTTGTTGTATGATCGTGTGTTAAGATACCCAGA 895
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TACAAACTTGTGGGGTCAAAACCTGACTTTGTTGTATGATCGTGTGTTAAGATACCCAGA 839
Query 896 CCGCGTTCAGAACCTATACTTCACATTTTTGTTCGTTCTTAGAGCAGTAACAAAGGCAGA 955
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 840 TCGCGTTCAGAACCTATACTTCACATTTTTATTTGTTCTTCGAGCAGTAACAAAGGCAGA 899
Query 956 AGATTACTTGGGAGAGGCTGAATATGAGACTGGTAATGTGATTGAGGACTTGAAGACCAA 1015
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 900 AGCTTACTTGGGAGAGGCTGAATATGAGACTGGTAATGTCATTGAGGACTTGAAGACTAA 959
Query 1016 ATCTCTGGTGAAGCAAGTAGTTAGTGACCCCAAAACTAAAGCAGCTTGTCCAGTACCATT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCTCTGGTGAAGCAAGTAGTTAGTGACCCCAAAACTAAAGCAGCTTGTCCAGTACCATT 1019
Query 1076 TGATGAAGCAAAGCTCTGGAAAGGCCAACGTGGACCAGAACTGAAGCAACAATTAGAAAA 1135
||||||||| ||||| |||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1020 TGATGAAGCTAAGCTTTGGAAAGGCCAACGTGGACCTGAACTGAAGCAACAAATACAAAA 1079
Query 1136 ACAATTCAGAAACATAAGTGCAATAATGGACTGTGTAGGCTGTGAGAAATGCCGTCTATG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 ACAATTCAGAAACATAAGTGCAATAATGGACTGTGTAGGCTGTGAGAAATGTCGTCTATG 1139
Query 1196 GGGAAAGCTTCAGATTCTCGGTCTCGGTACTGCATTGAAA-ATTCTA-TTCACTGTCAAT 1253
||||||||| |||||||| || ||||| |||||| | ||| || || ||||||||| ||
Sbjct 1140 GGGAAAGCTCCAGATTCTTGGCCTCGGCACTGCACT-AAAGAT-CTTGTTCACTGTCCAT 1197
Query 1254 GGTGAAGACAATTTGCGTCATAATCTCGAATTGCAAAGGAACGAAGTGATTGCGCTGATG 1313
|||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 1198 GGTGAAGACAATCTGCGTCATAGTCTTGAATTGCAAAGGAATGAAGTGATTGCGCTGATG 1257
Query 1314 AATCTTCTCCACCGATTATCTGAATCCGTGAAGTATGTTCATGACATGAGTCCTGCGGCC 1373
||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1258 AATCTTCTCAACCGATTATCTGAATCGGTGAAATATGTACATGACATGAGTCCTGCGGCC 1317
Query 1374 GAGAGAATCGCAGGTGGACATGCCTCTTCAGGGAACAGCTTTTGGCAAAGAATAGTGACA 1433
|||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 1318 GAGAGAATTGCAGGTGGACGGGCCTCTTCAGGGAACAGCATTTGGCAGAGAATAGTGACA 1377
Query 1434 TCTATAGCGCAATCAAAAGT 1453
||| || ||||| |||||||
Sbjct 1378 TCTTTAACGCAAACAAAAGT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5