BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38995.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321593 jgi|Araly1|321593|fgenesh1_pm.C_scaffold_4001650 1653 0.0
Ahg476341 jgi|Araly1|476341|fgenesh2_kg.2__1471__AT1G72110.1 91.6 2e-17
> Ahg321593 jgi|Araly1|321593|fgenesh1_pm.C_scaffold_4001650
Length=1425
Score = 1653 bits (895), Expect = 0.0
Identities = 1277/1456 (88%), Gaps = 47/1456 (3%)
Strand=Plus/Plus
Query 47 ATGGCGAAAGAGGAGCAAGAAACAGCGGCAATAGAGCCACTTAGCCCGGTTTCACAGTTG 106
|||| |||||| || ||||| ||| | ||| | ||||| ||||||||| |||||||||||
Sbjct 1 ATGGAGAAAGAAGACCAAGAGACATCAGCAGTGGAGCCGCTTAGCCCGATTTCACAGTTG 60
Query 107 TTTGTTTCGCCGAGTCTCTACTGCTTCATTATTTTCACTTTAGGGTTCCAAACTAGATGC 166
|| ||||||||| |||||| ||| |||||||||| ||||||||||| |||||||||||
Sbjct 61 TTCCTTTCGCCGACTCTCTATTGCGTCATTATTTTTACTTTAGGGTTTAAAACTAGATGC 120
Query 167 AACCCATCCACCATTGTTGAAGGTGTCAAGAACACATGGATCAAGCTCCCTCGCTTCTCT 226
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 AACCCATCTTCCATTGTTGAAGGTATCAAGAACACATGGATCAAGTTCCCTCGCTTCTCT 180
Query 227 AGCAAAGTGGAGATAAAGAAAAATGGAAAAGC-GTCTTGGGTTCCTGTTAGTGT-TCG-A 283
||||| ||||||| ||||||||||| ||||| || |||||||||| || | | | | |
Sbjct 181 TGCAAATTGGAGATGAAGAAAAATGGGAAAGCGGT-TTGGGTTCCTACTACT-TAT-GAA 237
Query 284 GTAGAAGATCATGTTGTTGTTCCAGATCTTGATTATTCCAACATTGAAAATCCTGATCAA 343
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 GTAGAAGATCATGTTATTGTTCCAGATATTGATTATTCCAACATTGAAAATCCTGATCAA 297
Query 344 TTTATAGAAGACTATACTTCGAA-ATTAGCTAATACTCCGATGGACATGTCCCGACCTTT 402
||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||
Sbjct 298 TTTATAGAAGACTATACTTCGAACATT-GCTAATACTCCAATGGACATGTCCAAACCTTT 356
Query 403 ATGGGAACTTCAT-TTACTTAATATAAAGACATCAAATGCAGAATCTTTA-GCTATAGGA 460
||||||| ||||| || || ||||| ||||||||||||||||||||||| | ||||||
Sbjct 357 ATGGGAATTTCATGTT-CTGAATATTAAGACATCAAATGCAGAATCTTTGTG-TATAGGG 414
Query 461 AAATTTCATCATTCTCTTGGCGATGGGATGTCTCTTATATCTCTTCTATTAGCTAGTTCA 520
||| | |||||||| || |||||||||||||| ||||| ||||||||| | |||| ||||
Sbjct 415 AAACTGCATCATTCACTCGGCGATGGGATGTCACTTATGTCTCTTCTACTCGCTATTTCA 474
Query 521 CGGAAAACATCAGATCCTGACGCT-TTGCCTACTACCGCGGCTACAAGAAAGCATGCC-A 578
|| ||||||||||| || || ||| || ||||||||||||||||||||||| |||| |
Sbjct 475 CGAAAAACATCAGACCCCGAAGCTCTT-CCTACTACCGCGGCTACAAGAAAACATGTTGA 533
Query 579 GTTCCAATAAAAAG-AGTTGGTGGTTGGTTGGAAGATTTTGGTTTATGATAAGAATCATT 637
||||||| | ||| | ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 534 -TTCCAATGATAAGGA-TTGGTGGTTGGTTGGGAGATTTTGGTTCATGATAAGAATCATT 591
Query 638 TTCACTACTGTTGTTGAATTGTTTAAGTATT-TGCTTACACTATGTTTTATGCGGGACAC 696
||||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||| ||
Sbjct 592 TTCACAACTGTTATTGAATTGTTCAAGTATTGT-CTTACACTATGTTTTATGCGGGATAC 650
Query 697 TAAAACTCCCCT-AATGGGTAAAACGGGTGAT-GCAATACGATCTAGAAAGGTTATACAT 754
||||||||| || || ||||||| |||| ||| | | | | ||||||||||||||| |||
Sbjct 651 TAAAACTCCTCTCAA-GGGTAAACCGGGAGATAG-AGTTCAATCTAGAAAGGTTATCCAT 708
Query 755 CGGATAGTAAGCTTTGATGATGTCAAGTTGGTGAAGAACAACA-TGGATATGAAAGTGAA 813
|||||| ||||| ||||||| ||||||||||||||||||| || |||| |||||||| ||
Sbjct 709 CGGATAATAAGCCTTGATGACGTCAAGTTGGTGAAGAACA-CAATGGAAATGAAAGTAAA 767
Query 814 TGATGTTCTTCTTGGAATGACACAGGCAGGTCTCTCAAGATATTTGAGCAGGAAATATGT 873
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 768 TGATGTTCTCCTTGGAATGACACAGGCAGGTCTCTCAAGATATTTGAGCCGAAAATATG- 826
Query 874 AGATGAAGATATGGTGGTCGAGAAGaaaaaaaaCTTGGAGAAAATCCGTCTTCGTGGTAC 933
| |||||||| ||| | |||||||||||||| | ||||||||| |||||
Sbjct 827 A--TGAAGATACGGTAGCCGAGAAGAAAAAAA--T----------CCGTCTTCGCGGTAC 872
Query 934 AGTATTCGTAAATTTAAGAGCAGAC-ACAAA-ACTCGAGGATTTGGCGAATATGATGGCA 991
|||| ||||||||||||||| | || ||||| | |||||||| |||||||||||||||||
Sbjct 873 AGTAATCGTAAATTTAAGAGAA-ACTACAAAGA-TCGAGGATCTGGCGAATATGATGGCA 930
Query 992 AAAGGTTCAAAGTGTAGATGGGGAAACTTCGTAGGTGTTATTATATTTCCTTTATGGGTG 1051
|| |||||||| ||||||||||||||||||||||| || | || ||||| |||||| |
Sbjct 931 AAGGGTTCAAAAAGTAGATGGGGAAACTTCGTAGGTATTGTCATTTTTCCGTTATGGATA 990
Query 1052 AGATCCGAAGATGATCCGTTGGAATACGTTCGACGAGCCAAATCTACTATGGATATCAAA 1111
||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 991 AGATCTGAGGATGATCCGTTGGAATACGTCCAACGAGCCAAATCTACTATGGATATCAAA 1050
Query 1112 AAACTGTCCATAGAATCACTTATTTGCTATGGACTCATCAAACTTACCA-GAAAAATACT 1170
||||| ||||| ||||||||||||||||||||| |||||||| || ||| ||||| | |
Sbjct 1051 AAACTCTCCATGGAATCACTTATTTGCTATGGAGTCATCAAATTTGCCATGAAAA-TGTT 1109
Query 1171 CGGGGGAAAGGTAGTAGAAACTCTTGTTAGGAGACTATTTGATCATACGACATTGACATT 1230
||| | ||||||||||||||||||||| | |||| ||||||||||||| |||||| ||||
Sbjct 1110 CGGAGAAAAGGTAGTAGAAACTCTTGTAAAGAGAATATTTGATCATACAACATTGGCATT 1169
Query 1231 TTCTAATGTGATGGGTCCAGACGAAGATATAAGtttttttGACCATCCAATGTCTTACGT 1290
||| ||||||||||||||||||||||| | |||||| |||| |||||||||||||||||
Sbjct 1170 TTCAAATGTGATGGGTCCAGACGAAGAAACAAGTTTCTTTGGTCATCCAATGTCTTACGT 1229
Query 1291 AGCAGCAAGCGCATTAGGTGGACCACAAGCTCTTATTATCCATTACGTAACCTATGTAAA 1350
||||||||| ||||| |||||| ||||||||||||||||||||| || | |||||||||
Sbjct 1230 AGCAGCAAGTGCATTGGGTGGATCACAAGCTCTTATTATCCATTTTGTGAGCTATGTAAA 1289
Query 1351 CAAGATTGTCATCAATCTAGCAGTAGACACATCAGTGATTCGAGACCCTCATCTACTATG 1410
|||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||
Sbjct 1290 CAAGATTGTCATCAATCTAGCAGTCGACACAACAGTGATTCCAGACCCTTATCTACTATG 1349
Query 1411 TGATGATTTGGTAGAATCGCTCGATATCATCAAACTTGCTGCCATGGAGAAAGGAGTTCA 1470
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1350 TGATGATTTGGTAGAATCGCTCAATATCATCAAACTTGCTGCCTTGGAGAAAGGAGTTCA 1409
Query 1471 TAAAATGGAGGTTTGA 1486
||||||||||||||||
Sbjct 1410 TAAAATGGAGGTTTGA 1425
> Ahg476341 jgi|Araly1|476341|fgenesh2_kg.2__1471__AT1G72110.1
Length=1302
Score = 91.6 bits (49), Expect = 2e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 968 GAGGATTTGGCGAATATGATGGCAAAAGGTTCAAAGTGTAGATGGGGAAACT 1019
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GAGGATTTGGCAAATATGATGGCAAAAGGTTCAAAGTGTAGATGGGGAAACT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5