BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39000.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482919 jgi|Araly1|482919|fgenesh2_kg.4__1979__AT2G39000.1 1563 0.0
> Ahg482919 jgi|Araly1|482919|fgenesh2_kg.4__1979__AT2G39000.1
Length=984
Score = 1563 bits (846), Expect = 0.0
Identities = 945/992 (95%), Gaps = 9/992 (1%)
Strand=Plus/Plus
Query 30 ATGCGGAGCACACCGTTGGGGACGACGGCGGTTTCACCAGCTTCAATCAAACACAACTCT 89
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGCGGAGCACACCGTTGGGGACGACGGCGGTTTCACCAGCTTCTATCAAGCACAACTC- 59
Query 90 TATGGGTATGGCCGCTTCGTTTCCTCTTCAGGAGTCTCTAATTTCTCTATCCATCGTCGG 149
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 --T---TATGGCCGCTTCGTTTCCTCTTCAGGAGTCTCTAATTTCTCTCTCCATCGTCGG 114
Query 150 AGACGCCACTCGTCGTTTTCTATCTCTCAAGCTCCTTCACAAATCAACTCAGGAGCTTGC 209
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct 115 AGACGCCACTCGTCGTTTTCTGTATCTCAAGCTCCTTCACAAATCAAATCAGGAGCATGC 174
Query 210 AATGCAAGTCAAATAGTTGATCTTTTTCCAGCGGTTTCACCTGAAATCGTTGTTCGTGAA 269
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 175 AATGCTAGTCAAATAGTTGATCTTTTCCCAGCGGTTTCACCTGAAATCGTTGTTCGGGAA 234
Query 270 GCACGGTTAGAGGACTGTTGGGAGGTGGCAGAGACTCATTGCAGCTCTTTCTTCCCGGGA 329
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 GCACGGTTAGAGGACTGCTGGGAAGTGGCAGAGACTCATTGCAGCTCTTTCTTCCCGGGA 294
Query 330 TATTCGTTCCCGCTTGATGTTGTTCTAAGAGTAGATAGGTTAATGGCAATGGTGATGGGA 389
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 295 TATTCGTTCCCGCTTGATGTTGTTCTGAGAGTAGATAGGTTAATGGCGATGGTAATGGGA 354
Query 390 TTTTCTATTCCACCTGGGTGCCAGAGGACTTGTTTAGTGGCTGTGATAGGTAGTTCAGTA 449
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 TTTTCTATTCCACCTGGGTGCCAGAGGACTTGTTTAGTCGCTGTGATAGGTAGTTCAGTA 414
Query 450 GATGAAACCATCTGCTTTGGAAGTGATGATTTCAAAATTGGAGCTTTTGATGCAAAGATC 509
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 415 GATGAAACCATTTGCTTTGGAAGCGAAGATTTCAAAATTGGAGCTTTTGATGCAAAGATC 474
Query 510 AGCTTAAACAAAGGTTATGTTGCTGGAATCTTGACTGTTGATACTGTGGCTGATTACCTT 569
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 475 AGCATAAACAAAGGTTATGTAGCTGGAATCTTGACTGTGGATACTGTGGCTGATTACCTT 534
Query 570 CCAAGAAAAGGACCTCTCCGCCAGAGAAGGACCGGGATCGCTTATGTATCAAATGTGGCA 629
|| || ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 535 CCGAGGAAAGGACCTCTCCGCCAGAGAAGGACCGGGATCGCGTACATATCAAATGTGGCG 594
Query 630 GTTCGAGAGAATTTCCGGCGCAAAGGAATAGCCAAGAGACTCATATGGAAAGCAGAGGCT 689
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 595 GTTCGAGAGAATTTCCGGCGCAAAGGAATAGCGAAGCGACTCATCTGGAAAGCAGAGGCT 654
Query 690 TTAGCCAAGAACTGGGGATGTAGAGCTATCGGCCTTCACTGTGATCTCAACAACTTAGGA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTAGCCAAGAACTGGGGATGTAGAGCTATCGGCCTTCACTGTGATCTCAACAACTTAGGA 714
Query 750 GCAACTAAACTTTACAAAGATCAAGGTTTCAGATCCATCAAGATCCCTGAAGGAGCGACT 809
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 GCCACTAAACTTTACAAAGATCAAGGTTTCAGATCCATCAAGATCCCCGAAGGAGCGACT 774
Query 810 TGGCCTCAACCGAAGACATCTCCTGACACCAGGTTTACCTTCATGATGAAGCTAGTG-AA 868
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 775 TGGCCACAACCAAAGACATCTCCTGACACCAGGTTTAACTTCATGATGAAGCTCGTGAAA 834
Query 869 CAACAACAATACACAAGCTCTTGAACAGTTTCGGTAAATCCGAGGAAAAAGGAAATTTGA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAACAACAATACACAAGCTCTTGAACAGTTTCGGTAAATCCGAGGAAAAAGGAAATTTGA 894
Query 929 ATTCCGTTTGTTGTTGAAATATAGCTCTGATTATGTAATTGTAAATATGGTTGCAGTCTT 988
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 895 ATTCCGTTTGTTGTTGAAATA--GCTCTGATTATGTAATTGTAAATATGTTTGCAGTCTT 952
Query 989 GTGTAAATGCTATTGTCTATAATATTTCGACC 1020
||||||||||||||||||||||||||||||||
Sbjct 953 GTGTAAATGCTATTGTCTATAATATTTCGACC 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5