BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39010.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482920 jgi|Araly1|482920|fgenesh2_kg.4__1980__AT2G39010.1 1906 0.0
Ahg887461 jgi|Araly1|887461|Al_scaffold_0092_1 449 2e-125
> Ahg482920 jgi|Araly1|482920|fgenesh2_kg.4__1980__AT2G39010.1
Length=1228
Score = 1906 bits (1032), Expect = 0.0
Identities = 1158/1217 (95%), Gaps = 15/1217 (1%)
Strand=Plus/Plus
Query 39 tctctctc-tctctttctTTTTTGAGTCCGTGAAGGCTAAGTCTGAAAGAATGACGAAGG 97
|||||||| ||||| || | | | |||||||| ||||||| |||||| ||||||||| |
Sbjct 17 TCTCTCTCTTCTCTCTC-TCTCTCAGTCCGTG-AGGCTAAACCTGAAACAATGACGAAAG 74
Query 98 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 134
Query 158 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 194
Query 218 TCATAGCTACTTTGCTCTTTCTATACGTGACTGTTTTGACAGTCATCGGCTTTAAGAGCC 277
||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 195 TCATAGCTACTTTCCTCTTTCTATATGTCACCGTTTTGACAGTCATCGGCTTTAAGAGCC 254
Query 278 AGACTGATATCAACGCCGGCGGCGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 337
|||| |||| |||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 255 AGACGGATACCAACGCTGGTGGTGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 314
Query 338 GGGCCTTTGGTGGCATGATATTCATCCTCGTCTACTGCACTGCCGGCATCTCTGGTGGAC 397
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 315 GGGCCTTCGGTGGCATGATCTTCATCCTCGTCTATTGCACTGCCGGCATCTCTGGTGGAC 374
Query 398 ACATCAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTTAGAG 457
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 375 ACATTAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTGAGAG 434
Query 458 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGTGGAGTTGGTTTGGTGAAAG 517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 435 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGCGGAGTTGGTTTGGTGAAAG 494
Query 518 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGACGGAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 495 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGAAGGAT 554
Query 578 ACAATGTTGGCGTTGGGGTTGGTGCTGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 637
|||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 555 ACAATGTTGGTGTAGGTGTTGGTGCGGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 614
Query 638 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTAGCAC 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 615 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTGGCAC 674
Query 698 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 734
Query 758 CCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 817
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 794
Query 818 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 854
Query 878 ACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 937
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 855 ACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 914
Query 938 TTCATGAGCTCCATGCTTAAATTTG-TTATTTCGAACTAGCGAAGAGGTGAAGAATTCTT 996
|||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 915 TTCATGAGCTTCATGCTTAAATTTGATT-TTTCGAACTATCGAAGAGGTGAAGAATTCTT 973
Query 997 TGGGCCAGGAAGGGAGGAAGGaaaaaaaaaaGGGACCCAAATCATATAAAAGAAAAAACG 1056
||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 974 TGGGCCAAGATGGGAGAAAGGAAAAAAAA--GGGACCCAAATCATATAAAAGAAAAAACG 1031
Query 1057 AATATTATTTAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AATATTATTAAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1091
Query 1117 GGAGGTTTGTGTGTAACAATTTGTAACGTACAAGC-----A--A-TGTATGTGTTATTTG 1168
||||||||| ||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1092 GGAGGTTTGAGTGTAACAATTTGTAACGTACAAGCCTCGTATGAATGTATGTGTTATTTG 1151
Query 1169 ATGCATATGATATTTATATATCTACTTATTGATGATTCTATCTTTGATCAATCATCATTA 1228
||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 1152 ATGCATATGATATTTTTATACCTACTTATTGATGATTCTATCTTTAATCAATAATCATTA 1211
Query 1229 TAACTTAAATTTCATAG 1245
|||||||||||||||||
Sbjct 1212 TAACTTAAATTTCATAG 1228
> Ahg887461 jgi|Araly1|887461|Al_scaffold_0092_1
Length=270
Score = 449 bits (243), Expect = 2e-125
Identities = 261/270 (97%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 688 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 60
Query 748 ATTACTGGCACCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 807
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTACTGGCACCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 120
Query 808 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 180
Query 868 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTC 927
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 181 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTG 240
Query 928 AGGAGCCAGCTTCATGAGCTCCATGCTTAA 957
|| ||||| ||||| ||||| |||||||||
Sbjct 241 AGAAGCCAACTTCACGAGCTTCATGCTTAA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5