BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39020.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482921 jgi|Araly1|482921|fgenesh2_kg.4__1981__AT2G39020.1 1225 0.0
Ahg887463 jgi|Araly1|887463|Al_scaffold_0092_3 516 1e-145
> Ahg482921 jgi|Araly1|482921|fgenesh2_kg.4__1981__AT2G39020.1
Length=919
Score = 1225 bits (663), Expect = 0.0
Identities = 778/831 (94%), Gaps = 17/831 (2%)
Strand=Plus/Plus
Query 43 AACCCTAATTTTCACAATCACAG-TAC-Caa-aaaaaaaTGGCAGCCGCCGCACCGCCAC 99
||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||
Sbjct 1 AACCCTAATTTTCACAATCACAGCTACGTAACCAAAAAATGGCAGCCGCCGCACCACCAC 60
Query 100 CGCCACCAACAGCAGCACCGGAACCAAACATGGTAGCACCACTAATTTCACCAATCGGCC 159
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGCCACCAACAGCAGCACCAGAACCAAACATGGTACCACCACTAATTTCACCAATCGGCC 120
Query 160 ACCCAATGTTCTCCCGGATCCGTCTGGCAACACCGTCCGATGTCCCATTCATCCACAAAC 219
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 121 ACCCAATCTTCTCCCGGATCCGTCTCGCAACACCGTCTGATGTCCCATTCATCCACAAGC 180
Query 220 TAATTCACCAAATGGCAGTCTTCGAACGTCTCACGCATCTCTTCTCCGCCACCGAATCAG 279
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 181 TAATCCACCAAATGGCCGTCTTCGAACGTCTCACACATCTCTTCTCCGCCACGGAATCAG 240
Query 280 GTCTCGCTTCAACACTCTTCACCTCTCGTCCTTTCCAATCATTCACAGTCTTCCTCTTAG 339
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GTCTCACTTCAACACTCTTCACCTCTCGTCCTTTCCAATCATTCACCGTCTTCCTCTTAG 300
Query 340 AAGTCTCTCGTTCTCCATTTCCAGCAACCATCACTTCATCACCATCTCCCGATTTCACAC 399
||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||||
Sbjct 301 AAGTCTCTCGTTCTCCATTTCCAACAACCCTCAC-T--TCACCATCTCCCGATTTCACAC 357
Query 400 CGTTTTTCAAAACACATAACCTT-GATCTCCCGATTGATGATCCGGAGAGTTACAATTTC 458
||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 358 CGTTTCTCAAAACGCATAA-CTTAGATCTCCCGATTGAGGATCCGGAGAGTTACAATTTC 416
Query 459 TCGCCGGATATGTTGAACGACGTCGTTGTAGCTGGGTTTGTTCTGTTTTTCCCGAATTAC 518
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 TCGCCGGATATGTTAAACGACGTCGTTGTTGCTGGGTTTGTTCTGTTTTTCCCGAATTAC 476
Query 519 TCTAGCTTTTTGTCCAAGCCTGGTTTTTACATTGAGGATATATTTGTGAGAGAGCCTTAT 578
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 TCGAGTTTTTTGTCGAAGCCTGGGTTTTACATTGAGGATATATTTGTGAGAGAGCCTTAT 536
Query 579 AGGAGGAAAGGGTTTGGTAGCATGTTGTTGACTGCTGTGGCCAAACAAGCGGTGAAGATG 638
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 537 AGGAGGAAAGGGTTTGGTAGTATGTTGTTGACTGCTGTGGCGAAACAAGCGGTGAAGATG 596
Query 639 GGTTATGGAAGAGTGGAATGGGTTGTTCTTGATTGGAATGTTAATGCTATCAAGTTTTAT 698
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 597 GGTTATGGAAGAGTGGAATGGGTTGTTCTTGATTGGAATGTGAATGCTATCAAGTTTTAT 656
Query 699 GAGCAGATGGGTGCTCAGATTCTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCT 758
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAGCAGATGGGTGCTCAGATTTTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCT 716
Query 759 CTTGAAGCTTTTGATCAGGTCAACATCTAGAGATTGATGCTGTGTTG-CTGAGAGTTATC 817
||||||||||||||| |||| |||||||||||||||||| | || || |||||||||||
Sbjct 717 CTTGAAGCTTTTGATAAGGTAAACATCTAGAGATTGATGTTTTGGTGGCTGAGAGTTATA 776
Query 818 GAATCAGA-TCACTTCCTCTTGCTTT----T--AAAGTTTGTGtttttttt 861
||||| || ||||||||||||||||| | ||||||||||||||||||
Sbjct 777 GAATC-GAATCACTTCCTCTTGCTTTAAGCTTTAAAGTTTGTGTTTTTTTT 826
Score = 119 bits (64), Expect = 5e-26
Identities = 86/96 (90%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 907 atgatgatgatgaATTCTCTATGCTTACTTGTTGGATACTGAATGAGAAAAAAGAACCCT 966
||||||||||||||||| |||||||||||| ||||| ||||||||| || | ||||||
Sbjct 827 ATGATGATGATGAATTCGCTATGCTTACTTACTGGATTCTGAATGAG--AACA-AACCCT 883
Query 967 TTTGTTGAATGTATGAAATGTTTCGAGTTTTTAAAG 1002
|||||||||||||||||||||||| || ||||||||
Sbjct 884 TTTGTTGAATGTATGAAATGTTTCAAGGTTTTAAAG 919
> Ahg887463 jgi|Araly1|887463|Al_scaffold_0092_3
Length=432
Score = 516 bits (279), Expect = 1e-145
Identities = 299/309 (97%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 468 ATGTTGAACGACGTCGTTGTAGCTGGGTTTGTTCTGTTTTTCCCGAATTACTCTAGCTTT 527
||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGTTAAACGACGTCGTTGTTGCTGGGTTTGTTCTGTTTTTCCCGAATTACTCGAGTTTT 60
Query 528 TTGTCCAAGCCTGGTTTTTACATTGAGGATATATTTGTGAGAGAGCCTTATAGGAGGAAA 587
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTCGAAGCCTGGGTTTTACATTGAGGATATATTTGTGAGAGAGCCTTATAGGAGGAAA 120
Query 588 GGGTTTGGTAGCATGTTGTTGACTGCTGTGGCCAAACAAGCGGTGAAGATGGGTTATGGA 647
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGGTTTGGTAGTATGTTGTTGACTGCTGTGGCGAAACAAGCGGTGAAGATGGGTTATGGA 180
Query 648 AGAGTGGAATGGGTTGTTCTTGATTGGAATGTTAATGCTATCAAGTTTTATGAGCAGATG 707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AGAGTGGAATGGGTTGTTCTTGATTGGAATGTGAATGCTATCAAGTTTTATGAGCAGATG 240
Query 708 GGTGCTCAGATTCTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCTCTTGAAGCT 767
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGCTCAGATTTTGCAGGAGTGGAGAGTTTGTAGACTTACTGGTGATGCTCTTGAAGCT 300
Query 768 TTTGATCAG 776
|||||||||
Sbjct 301 TTTGATCAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5