BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39040.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345680 jgi|Araly1|345680|fgenesh1_pg.C_scaffold_4002022 1496 0.0
> Ahg345680 jgi|Araly1|345680|fgenesh1_pg.C_scaffold_4002022
Length=1041
Score = 1496 bits (810), Expect = 0.0
Identities = 971/1047 (93%), Gaps = 17/1047 (2%)
Strand=Plus/Plus
Query 63 TAAGAGTTTAGAGATTCGGTTTTTATTTCCACTTGTTTTGTTTTTGGTTGTGAAATTACT 122
|||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||
Sbjct 6 TAAGAGTTTAGAGATTCGGTTTTTATTTCCACTTGTTTTG--TTT--TTG-G----TACT 56
Query 123 TTGTGTTGATGGTAAAG-GATTCAATAATAATGGCCATAAGATAAGAAAAGGAAGATGGG 181
||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 57 TTGTGTTGATGGT-AAGAGATTCAATAATAATGGCCACAAGATGAGAAAAGGCAGATGGG 115
Query 182 AAGGTAAGCTGAAGATGAACTTCTATCACAATAGCTGCCCTGGAGCCGAGGATATCGTG- 240
||||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||
Sbjct 116 AAGGTAAGCTGAAGATGAACTTCTATCACAAAAGTTGTCCTAAAGCTGAGGAAATCGTGA 175
Query 241 AGGCAGATAGTGTGGAAGAAAGTCGAAGCAAACCGTAGCCTGGCTCCCAAGTTACTGAGG 300
| | |||| |||| ||||||||||| || ||||| |||| |||||||||||||||| |||
Sbjct 176 AAG-AGATTGTGTCGAAGAAAGTCGCAGAAAACCCTAGCTTGGCTCCCAAGTTACTAAGG 234
Query 301 GTTCATTACCATGACTGCTTTGTTAGGGGGTGCGACGCATCGCTGCTTTTAGATTCGGTT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 235 GTTCATTACCATGACTGCTTTGTTAGGGGGTGCGACGCATCACTGCTTTTAGATTCAGTT 294
Query 361 GCTGGAAAAGCAGTGTCCGAGAAGGAAGCGAGACCTAATCTCTCGCTTTCCGGGTTTGAA 420
||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 295 GCTGGAAAAGCCGCGTCCGAGAAGGAAGCCAGACCTAATCTCTCGCTATCCGGGTTCGAA 354
Query 421 ATCATCGATGAGATCAAGTATATTCTCGAAAAACGATGCCCTAACACCGTCTCTTGCGCT 480
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 355 ATCATCGATGAGATCAAGTCCATTCTCGAAAAACGATGCCCTAAAACCGTCTCTTGCGCA 414
Query 481 GACATTCTCACTTTAGCCGCCCGAGATGCCGTCTCTTATGAATTTGAACGGCCGCTATGG 540
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 415 GACATTCTCACCTTAGCCGCCAGAGATGCCGTCTCATATGAATTTGAACGGCCGCTATGG 474
Query 541 AATGTGTTTACCGGACGTGTTGATGGAAGAGTTTCATTGGCAACGGAGGCGGCCAGAGAC 600
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 AATGTGTTTACGGGTCGTGTTGATGGACGAGTTTCATTGGCAACGGAGGCGGCCAGAGAC 534
Query 601 TTACCATCCGCTGGGGCAAACTTCACCACTCTACAGAAACTCTTTGCCGAGAGCGATTTG 660
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 TTACCGTCCGCTGGGGCAAACTTCACCACTCTACAGAAACTCTTTGCCGAAAGCGATTTG 594
Query 661 GACGTCGTTGACCTCGTCGCTTTATCAGGAGCACACACGATAGGAATAGCACATTGCGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACGTCGTTGACCTCGTCGCTTTATCAGGAGCACACACGATAGGAATAGCACATTGCGGT 654
Query 721 GTGTTTGG-CAGAAGGCTCTTGAACTTCACCGGAAAAGGGGACACAGATCCTTCCCTAAA 779
|||||||| | | |||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 655 GTGTTTGGTC-GGAGGCTCTTAAACTTCACCGGAAAAGGAGACACAGATCCTTCTCTGAA 713
Query 780 CCCTAGTTACGCCTCCTTCCTCAAATCCGAATGCTCCGACAAATCTTTAAGACTCAAC-C 838
| |||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 714 CTCTAGCTACGCCTCCTTACTCAAATCCGAATGCTCCGACAAATCTCTAAGATTCAACTC 773
Query 839 CTTCCGCAGTGGTCGGAATGGACCCTACTGGTCCTCTCGCCTTTGACAGTGGCTACTTCG 898
| ||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 774 C-TCCGCAGTGGTTGGAATGGACCCTACCGGGCCTCTCACCTTTGACAGTGGCTACTTCG 832
Query 899 TCTCTCTACTCAAGAACAAAGGACTCTTCACCTCCGACGCCGCCTTGTTGACTGATCCCT 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCTCTCTCCTCAAGAACAAAGGACTCTTCACCTCCGACGCCGCCTTGTTGACTGATCCCT 892
Query 959 CCGCCGCTCACATTGCTAGTGTTTTCCAAAACTCCGGCGCTTTTCTTGCTCAGTTTGGTC 1018
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 893 CCGCCGCTCACATTGCTAGTGTTTTCCAAAACTCCAAAACTTTTCTTGCTCAGTTTGGTC 952
Query 1019 GGTCCATGATAAAGATGAGTTCCATCAAAGTCCTTACTCTTGGAGATCAAGGTGGTGAGA 1078
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 953 GGTCCATGATCAAGATGAGTTCCATTAAAGTCCTTACTCTTGGAGATCAAGGTGGTGAGA 1012
Query 1079 TTCGTAAAAATTGTCGCCTCGTCAACT 1105
|||||| ||||||||||||||||||||
Sbjct 1013 TTCGTAGAAATTGTCGCCTCGTCAACT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5