BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39050.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901830 jgi|Araly1|901830|Al_scaffold_0004_2480 1369 0.0
Ahg333392 jgi|Araly1|333392|fgenesh1_pm.C_scaffold_728000001 1369 0.0
> Ahg901830 jgi|Araly1|901830|Al_scaffold_0004_2480
Length=984
Score = 1369 bits (741), Expect = 0.0
Identities = 881/948 (93%), Gaps = 11/948 (1%)
Strand=Plus/Plus
Query 31 CACCACCACCAGCATCACCGTCACCACCAACGCGACGACGGAGAAGACGATCGTCAATCC 90
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 13 CACCACCACCAGCATCAACGTCACCACCAACGCGACGACGGCGAAGACGATCGTCACTCC 72
Query 91 TTTGGAG-TACCACCGCCACACGTCGATGCTCCGCCACAACCTCATGGTCTTTACCAGTC 149
|| || | ||||||||||| ||| |||||||| |||||||||||||| |||||||||||
Sbjct 73 TTCGG-GCAACCACCGCCACGCGTTGATGCTCCTCCACAACCTCATGGCCTTTACCAGTC 131
Query 150 ACAGCCTCATTTTGATCCTTACGCGCCTACTCCTCAAGCTCCGGCGCCTTACCGATCAGA 209
||| |||||||||||||| |||||||||||| | | | ||||||||||||||||||||||
Sbjct 132 ACAACCTCATTTTGATCCCTACGCGCCTACT-C-C-ATCTCCGGCGCCTTACCGATCAGA 188
Query 210 AACTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAACTCC 269
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 ACCTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAGCTCC 248
Query 270 GGCACCACCGCCTTCATTTGGTCATGTGAGTCATGTTGGTCACCAATCAC-CCAACGAAT 328
||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 249 GGCACCACCGCCTGCGTTTGGTCATGTGAGTCATGTCGGTCACCAATC-CTCCAACGAAT 307
Query 329 CTTACCCACCGGAACACCACCGTTACGGAGGTTATCAACAGCCGTCTAATTCCTTACTGG 388
| |||||||||||||||||||||||||||||||||| || |||||||||||| || |||
Sbjct 308 CCTACCCACCGGAACACCACCGTTACGGAGGTTATCCACCGCCGTCTAATTCGATATTGG 367
Query 389 AAAGTCATGGAGATCACAGTGGAGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 448
|||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 368 AAAGCCACGGAGACCACTCTGGCGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 427
Query 449 AATCGTCTTCTGGTGTCTACCACAAG-CCTGATGAGAATCGTCTACCTGATAATCTTGCT 507
|||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 428 AATCGTCTCCTGGTGTCTACCAC-CGCCCTGATGAGAATCGTCTGCCTGATAATCTTGCC 486
Query 508 GGACTCGCCGGAAGAGCAACGGTGAAGGTGTATTCCAAGGCGGAGCCTAACTATAATTTG 567
|||||||||||||| || ||||||||||||||||| ||||| |||||||||||| || ||
Sbjct 487 GGACTCGCCGGAAGGGCGACGGTGAAGGTGTATTCGAAGGCTGAGCCTAACTATTATCTG 546
Query 568 ACGATCAGAGATGGTAAGGTTATTCTCGCCCCAGCGGATCCATCTGATGAAGCACAGCAT 627
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 547 ACGATCAGAGATGGTAAGGTCATCCTCGCTCCAGCCGATCCATCTGATGAAGCACAGCAT 606
Query 628 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 666
Query 688 GCTCTTGTAAACAAAGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACTCATCCC 747
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 GCTCTTGTAAACAAGGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACCCATCCC 726
Query 748 GTGCATCTGATTCGATATG-TGCCTGATAAGCTTGACGAGTCAGTACTATGGACAGAGAG 806
|||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||
Sbjct 727 GTGCATCTGACTCGATATGAT-CCTGATAAGCTTGATGAGTCTGTACTATGGACAGAGAG 785
Query 807 CAAGGATTTTGGCGATGGATATCGCACAATAAGAATGGTAAACAATACGAGGCTAAACGT 866
||||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 786 CAAGGATTTGGGCGATGGATATCGCACGATAAGGATGATAAACAATACAAGGCTAAACGT 845
Query 867 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTACGTGATGGCACGACTATCGTCCT 926
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 846 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTCCGTGATGGCACGACTATTGTCCT 905
Query 927 CTGGGACTGGAACAAAGGCGACAACCAGCTCTGGAAGATCTTTCCTTT 974
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 906 CTGGGACTGGAACAAAGGCGACAACCAGCGCTGGAAGATCTTTCCTTT 953
> Ahg333392 jgi|Araly1|333392|fgenesh1_pm.C_scaffold_728000001
Length=984
Score = 1369 bits (741), Expect = 0.0
Identities = 881/948 (93%), Gaps = 11/948 (1%)
Strand=Plus/Plus
Query 31 CACCACCACCAGCATCACCGTCACCACCAACGCGACGACGGAGAAGACGATCGTCAATCC 90
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 13 CACCACCACCAGCATCAACGTCACCACCAACGCGACGACGGCGAAGACGATCGTCACTCC 72
Query 91 TTTGGAG-TACCACCGCCACACGTCGATGCTCCGCCACAACCTCATGGTCTTTACCAGTC 149
|| || | ||||||||||| ||| |||||||| |||||||||||||| |||||||||||
Sbjct 73 TTCGG-GCAACCACCGCCACGCGTTGATGCTCCTCCACAACCTCATGGCCTTTACCAGTC 131
Query 150 ACAGCCTCATTTTGATCCTTACGCGCCTACTCCTCAAGCTCCGGCGCCTTACCGATCAGA 209
||| |||||||||||||| |||||||||||| | | | ||||||||||||||||||||||
Sbjct 132 ACAACCTCATTTTGATCCCTACGCGCCTACT-C-C-ATCTCCGGCGCCTTACCGATCAGA 188
Query 210 AACTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAACTCC 269
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 ACCTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAGCTCC 248
Query 270 GGCACCACCGCCTTCATTTGGTCATGTGAGTCATGTTGGTCACCAATCAC-CCAACGAAT 328
||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 249 GGCACCACCGCCTGCGTTTGGTCATGTGAGTCATGTCGGTCACCAATC-CTCCAACGAAT 307
Query 329 CTTACCCACCGGAACACCACCGTTACGGAGGTTATCAACAGCCGTCTAATTCCTTACTGG 388
| |||||||||||||||||||||||||||||||||| || |||||||||||| || |||
Sbjct 308 CCTACCCACCGGAACACCACCGTTACGGAGGTTATCCACCGCCGTCTAATTCGATATTGG 367
Query 389 AAAGTCATGGAGATCACAGTGGAGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 448
|||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 368 AAAGCCACGGAGACCACTCTGGCGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 427
Query 449 AATCGTCTTCTGGTGTCTACCACAAG-CCTGATGAGAATCGTCTACCTGATAATCTTGCT 507
|||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 428 AATCGTCTCCTGGTGTCTACCAC-CGCCCTGATGAGAATCGTCTGCCTGATAATCTTGCC 486
Query 508 GGACTCGCCGGAAGAGCAACGGTGAAGGTGTATTCCAAGGCGGAGCCTAACTATAATTTG 567
|||||||||||||| || ||||||||||||||||| ||||| |||||||||||| || ||
Sbjct 487 GGACTCGCCGGAAGGGCGACGGTGAAGGTGTATTCGAAGGCTGAGCCTAACTATTATCTG 546
Query 568 ACGATCAGAGATGGTAAGGTTATTCTCGCCCCAGCGGATCCATCTGATGAAGCACAGCAT 627
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 547 ACGATCAGAGATGGTAAGGTCATCCTCGCTCCAGCCGATCCATCTGATGAAGCACAGCAT 606
Query 628 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 666
Query 688 GCTCTTGTAAACAAAGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACTCATCCC 747
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 GCTCTTGTAAACAAGGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACCCATCCC 726
Query 748 GTGCATCTGATTCGATATG-TGCCTGATAAGCTTGACGAGTCAGTACTATGGACAGAGAG 806
|||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||
Sbjct 727 GTGCATCTGACTCGATATGAT-CCTGATAAGCTTGATGAGTCTGTACTATGGACAGAGAG 785
Query 807 CAAGGATTTTGGCGATGGATATCGCACAATAAGAATGGTAAACAATACGAGGCTAAACGT 866
||||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 786 CAAGGATTTGGGCGATGGATATCGCACGATAAGGATGATAAACAATACAAGGCTAAACGT 845
Query 867 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTACGTGATGGCACGACTATCGTCCT 926
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 846 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTCCGTGATGGCACGACTATTGTCCT 905
Query 927 CTGGGACTGGAACAAAGGCGACAACCAGCTCTGGAAGATCTTTCCTTT 974
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 906 CTGGGACTGGAACAAAGGCGACAACCAGCGCTGGAAGATCTTTCCTTT 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5