BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39060.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321600 jgi|Araly1|321600|fgenesh1_pm.C_scaffold_4001657 1336 0.0
Ahg887827 jgi|Araly1|887827|Al_scaffold_0728_1 926 0.0
> Ahg321600 jgi|Araly1|321600|fgenesh1_pm.C_scaffold_4001657
Length=777
Score = 1336 bits (723), Expect = 0.0
Identities = 760/778 (98%), Gaps = 2/778 (0%)
Strand=Plus/Plus
Query 47 ATGTTCCTCAAGGTTCATGAAATTGCTTTTCTCTTTGGTCTCTTAGGCAACATTGTGTCT 106
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCCTCAAGGTTCATGAACTTGCTTTTCTCTTTGGTCTCTTAGGCAACATTGTGTCT 60
Query 107 TTTGGGGTGTTCTTGTCACCAGTGCCAACGTTTTATGGGATATACAAGAAGAAATCATCA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGGGTGTTCTTGTCACCAGTGCCAACGTTTTATGGGATATACAAGAAGAAATCATCA 120
Query 167 AAAGGGTTTCAGTCGATACCGTACATATGTGCACTAGCAAGTGCAACTCTTCTTCTCTAC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGGTTTCAGTCGATACCGTACATATGTGCACTAGCAAGTGCAACTCTTCTTCTCTAC 180
Query 227 TACGGAATCATGAAGACACATGCTTATCTGATCATTAGTATTAACACCTTTGGATGTTTC 286
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TACGGAATAATGAAGACACATGCTTATCTCATCATTAGTATTAACACCTTTGGATGTTTC 240
Query 287 ATTGAAATCTCCTACTTGTTTCTCTATATCCTTTATGCACCAAGAGAGGCCAAGATATCC 346
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 ATTGAAATCTCCTACTTGTTTCTCTATATCATTTATGCACCAAGAGAGGCCAAGATATCC 300
Query 347 ACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTAATTCTTCTAGTT 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTAATTCTTCTAGTC 360
Query 407 AATCTTTTGGTTCCAAAACAACACCGCGTCTCGACCGTTGGATGGGTTTGTGCTGCCTAC 466
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 AATCTCTTGGTTCCAAAACAACACCGTGTCTCGACCGTTGGATGGGTTTGTGCTGCTTAC 420
Query 467 AGTCTCGCAGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATAAAGACAAAGAGT 526
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AGTCTCGCCGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATAAAGACAAAAAGT 480
Query 527 GTGGAATACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCCGTCATGTGGTTC 586
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGGAGTACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCCGTCATGTGGTTC 540
Query 587 TTTTATGGACTTCTTATCAAAGACAAGTTCATTGCTATGCCAAACATTCTCGGTTTTCTA 646
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 TTTTATGGACTTCTTATCAAAGACAAGTTCATCGCTATGCCAAACATTCTCGGTTTTCTA 600
Query 647 TTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACGAAAACGGATTTG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACGAAAACGGATTTG 660
Query 707 CCAACAGAGAACCAACTAGCAAATAAAACCGATGTTAACGAAGTCCCGATCGTGGCCGTT 766
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 661 CCAACAGAGAACCAACTTGCAAATAAAACCGATGTAAACGAAGTGCCGATCGTGGCCGTT 720
Query 767 GAATTGCCTGATGTGGGATCAGACAATGTTGAAGGATCGG-TGAGGCCAATGAAGTGA 823
||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 721 GAATTGCCTGATGTGAGATCAGACAATGTTGAAGGATCGGCT-AGGCCAATGAAGTGA 777
> Ahg887827 jgi|Araly1|887827|Al_scaffold_0728_1
Length=549
Score = 926 bits (501), Expect = 0.0
Identities = 534/550 (97%), Gaps = 2/550 (0%)
Strand=Plus/Plus
Query 275 TTTGGATGTTTCATTGAAATCTCCTACTTGTTTCTCTATATCCTTTATGCACCAAGAGAG 334
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1 TTTGGATGTTTCATTGAAATCTCCTACCTGTTTCTCTATATCATTTATGCACCAAGAGAG 60
Query 335 GCCAAGATATCCACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCAAGATATCCACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTA 120
Query 395 ATTCTTCTAGTTAATCTTTTGGTTCCAAAACAACACCGCGTCTCGACCGTTGGATGGGTT 454
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATTCTTCTAGTCAATCTCTTGGTTCCAAAACAACACCGTGTCTCGACCGTTGGATGGGTT 180
Query 455 TGTGCTGCCTACAGTCTCGCAGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATA 514
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGCTGCTTACAGTCTCGCCGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATA 240
Query 515 AAGACAAAGAGTGTGGAATACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCC 574
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGACAAAAAGTGTGGAGTACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCC 300
Query 575 GTCATGTGGTTCTTTTATGGACTTCTTATCAAAGACAAGTTCATTGCTATGCCAAACATT 634
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GTCATGTGGTTCTTTTATGGACTTCTTATCAAAGACAAGTTCATCGCTATGCCAAACATT 360
Query 635 CTCGGTTTTCTATTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGGTTTTCTATTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACG 420
Query 695 AAAACGGATTTGCCAACAGAGAACCAACTAGCAAATAAAACCGATGTTAACGAAGTCCCG 754
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 421 AAAACGGATTTGCCAACAGAGAACCAACTTGCAAATAAAACCGATGTAAACGAAGTGCCG 480
Query 755 ATCGTGGCCGTTGAATTGCCTGATGTGGGATCAGACAATGTTGAAGGATCGG-TGAGGCC 813
||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 481 ATCGTGGCCGTTGAATTGCCTGATGTGAGATCAGACAATGTTGAAGGATCGGCT-AGGCC 539
Query 814 AATGAAGTGA 823
||||||||||
Sbjct 540 AATGAAGTGA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5