BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39080.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934663 jgi|Araly1|934663|scaffold_402651.1 1482 0.0
> Ahg934663 jgi|Araly1|934663|scaffold_402651.1
Length=1076
Score = 1482 bits (802), Expect = 0.0
Identities = 1005/1098 (92%), Gaps = 33/1098 (3%)
Strand=Plus/Plus
Query 45 AGCtttttgcttttttGTCTTAATGGGTTTCATCTCTTGCATCTCATTTCCGACGATCAA 104
|||||||||| |||| |||| |||||||||||||||||||| |||| |||||||| |||
Sbjct 1 AGCTTTTTGC--TTTTATCTTGATGGGTTTCATCTCTTGCATTTCATATCCGACGACCAA 58
Query 105 TTCAAGAATTCTATCGACTCACCACTTT-TCCAAGCACTCGACTTCAGCGTCTTCTTCAT 163
|||||||||||||||||| || || ||| |||||||| ||||||||| | | |||||||
Sbjct 59 TTCAAGAATTCTATCGACCCATCA-TTTCTCCAAGCAATCGACTTCA--G-CATCTTCAT 114
Query 164 ATTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCC-AAAGTCTCGTTTTTTCTT 222
|||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 115 TTTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCCAAAAG-CTCCTTCTTTCTT 173
Query 223 CCATTAACGTCTTCGT-TAATGGCGACCCCTATTCAAGCCTCTTCTTCCTCCACCATTGG 281
|||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 174 CCATCAACGTCTTC-TAAAATGGCGACTCCTATTCAAGCCTCTTCTTCCTCCACCATTGG 232
Query 282 TGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGAGCAAACGATCTGCT 341
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 233 TGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGGGCAAACGATTTGCT 292
Query 342 GATTGTTGGACCGGGTGTTCTTGGACGCTTAGTTGCAGAACAGTGGAGACAGGAACATCC 401
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 293 GATTGTTGGACCAGGTGTTCTTGGACGCTTAGTTGCAGAACAATGGAGACAGGAACATCC 352
Query 402 AGAGTCTCAAATCTTTGGGCAGACAGTAACAACAAATCATCATGGTGAGTTGGAGAATTT 461
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 353 AGAGTGTCAAATCGTTGGGCAGACAGTAACAACAAATCATCATGATGAGTTGGAGAAGTT 412
Query 462 GGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGAAAGTTCTCCTATGTGATCTT 521
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 GGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGCAAGTTCTCCTATGTGATCTT 472
Query 522 TTGTGCTCCACCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAA 581
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTGTGCTCCTCCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAA 532
Query 582 CTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGA 641
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGGAACGGTGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGA 592
Query 642 TAACGGAGAATGCAACGAGGATTCTCCAGTAGTGCCACTGGGAAAGAGTCCAAGAACTGA 701
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 593 TAACGGAGAATGCAACGAGGATTCTCCAGTGGTGCCACTGGGAAAGAGTCCAAGAACTGA 652
Query 702 TGTGCTTTTGAAAG-CTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAG 760
||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 653 TGTGCTTTT-AAAGGCTGAAAAAGTGGTGTTGGAATGTGGAGGGACTGTCCTTAGA-T-- 708
Query 761 CAGGGCTTTACACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAG-ACAATT 819
| || |||||||||||||||| |||||||||||||||| | ||| |
Sbjct 709 ------T-------GA--CTAGAGGTGCACATACATACTGGTTGAGTAAGG-GTACAGTA 752
Query 820 GATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGGATGCAGCATCGCTGGCA 879
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 753 GATGCTCGTCCTGATCATATCCTGAATCTCATACACTATGAGGATGCAGCGTCGCTGGCA 812
Query 880 GTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCT 939
|||||||||||||| |||||| |||||| || |||||||||||| ||||||||||||||
Sbjct 813 GTTGCAATCATGAAAAAGAAACCCGGTGGTCAGATTTTCTTGGGCTGTGACAACCATCCA 872
Query 940 TTGTCAAGGCAAGAGGTGATGGACCTGATGGCTCAAAGCGGAAAATTTGATAAGAAGTTC 999
||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||
Sbjct 873 TTGTCAAGGCAAGAGGTGATGGACCTGATGGATCAAAGTGGAAAATATGATAAAAAGTTC 932
Query 1000 AAAGGTTTTACAAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGA 1059
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GAAGGTTTCACGAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGA 992
Query 1060 GCGGAGATAGGATGGGAGCCGAAGTATCCAAGCTTTGCCCAATTTTTTGGAGTATCGACA 1119
|| || |||||||||||||| ||||||||||| ||||| |||||| |||||||||| |
Sbjct 993 GCTGAAATAGGATGGGAGCCAAAGTATCCAAGTTTTGCTCAATTTCTTGGAGTATCAATG 1052
Query 1120 TAATATTTTTACTTGGAT 1137
|||||| || | ||||||
Sbjct 1053 TAATATCTTCAATTGGAT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5