BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39090.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482928 jgi|Araly1|482928|fgenesh2_kg.4__1988__AT2G39090.1 3037 0.0
Ahg887464 jgi|Araly1|887464|Al_scaffold_0092_4 654 0.0
> Ahg482928 jgi|Araly1|482928|fgenesh2_kg.4__1988__AT2G39090.1
Length=1831
Score = 3037 bits (1644), Expect = 0.0
Identities = 1773/1834 (97%), Gaps = 13/1834 (1%)
Strand=Plus/Plus
Query 1 ACTTCATCGCTGCTCCGAAGAAAAAACTTCACCATTGCCACTAACGACGAACTCTC-TTG 59
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||
Sbjct 1 ACTTCATCGCTGCTCCGAAGAAAAAACTCCACCATTGCCACTAACCACGAACTCTCTTTG 60
Query 60 TCTCTGAAATGGAGGTTCCAAAGGAGCAGATCGCGACT-TTAATAGAGCATGGGCTTTAC 118
||||| ||||||||||||||||||| |||||||||| | || |||||||||||||| |||
Sbjct 61 TCTCTCAAATGGAGGTTCCAAAGGATCAGATCGCGAATCTT-ATAGAGCATGGGCTCTAC 119
Query 119 GATTCTGCTGAAATGCTCGGCTGCTTTCTCGTTTCTTCTCCTACTGTTAGTGCCGAAACT 178
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 120 GATTCTGCTGAAATGCTTGGCTGCTTTCTCGTTTCTTCTTCTACTGTTAGCGCCGAAACT 179
Query 179 AGTCCTCAGCTCAAGGCGGAGAATTTGATTCTACTGGGTGATGCTTTATTTCATCAGAGA 238
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AGTCCTCAGCTCAAGGCGGAGAATTTGATTCTACTGGGCGATGCTTTATTTCATCAGAGA 239
Query 239 GAACACCGGAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAACACCGGAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCG 299
Query 299 AAGCAAAGCTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACCAGATCATCTGTGAAT 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 AAGCAAAGCTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACAAGATCATCTGTGAAT 359
Query 359 GCCTCCAGCATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCAC 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCTCTAGCATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCAC 419
Query 419 TTTGCTCTTAATGAAACAAAAGCTGCGATTGCTGAGATGGAATCTGTCAAGACCAGGAGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGCTCTTAATGAAACAAAAGCTGCGATTGCTGAGATGGAATCTGTCAAGACCAGGAGC 479
Query 479 TTAGAGATGAATATACTGATGGCAAAGCTTCATCGAAATTCTGGATACAACCGTGGTGCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTAGAGATGAATATACTGATGGCAAAGCTTCATCGAAATTCTGGATACAACCGTGGTGCT 539
Query 539 ATTGCTTTTTATAAAGAGTGTTTAAGGCAGTGTCCTTATGTACTTGAAGCCGTCATAGGT 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 ATTGCTTTTTATAAAGAGTGTTTAAGGCAGTGTCCTTATGTACTCGAAGCCGTCATAGGT 599
Query 599 TTAGCTGAACTGGGAGTTAGTGCAAAGGATATCATATCATCGTTTACTCAGACTTCAAAT 658
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 600 TTAGCTGAACTGGGAGTCAGTGCAAAGGATATCATATCATCTTTTACCCAGACTTCAAAT 659
Query 659 AGAAGTGCAAAGGTTTCACTCGATCAGATAGATCCTACCCGCTGGTTGCAACGTTATGTA 718
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 AGAAGTGCAAAGGTTTCGCTCGATCAGATAGATCCTACCCGTTGGTTGCAACGTTATGTA 719
Query 719 GAGGCCCAGTGTTGTGTTGCTTCGCATGCTTACAAAGGGGCGCTGGAACTCTTTGCTGAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGGCCCAGTGTTGTGTTGCTTCGCATGCTTACAAAGGGGCGCTGGAACTCTTTGCTGAA 779
Query 779 CTCTTACAACGATTTCCAAATAATGTACACTTGTTGACTGAGACAGCAAAGGTTGAAGCC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTTACAACGATTTCCAAATAATGTACACTTGTTGACTGAGACAGCAAAGGTTGAAGCC 839
Query 839 ATTATTGGGAAAAATGATGAGGCCATAATGAGATTTGAGAAGGTTCGGTCAATTGATCCT 898
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTATCGGGAAAAATGATGAGGCCATAATGAGATTTGAGAAGGTTCGGTCAATTGATCCT 899
Query 899 TACACA-CTAACCAGTATGGATGAGTATGCGATGCTGCTTCAGATTAAGTGTGATTATTC 957
|||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 900 TACACAAC-AACCAGTATGGATGAGTATGCAATGCTGCTTCAGATAAAGTGTGATTATTC 958
Query 958 CAGGCTAAACAAGCTCGTCCACGATTTATTAAGCGTTGATCATACCAGAGCAGAAGTATT 1017
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 959 TAGGCTAAACAAGCTCGTCCACGATTTATTAAGCATTGATCATAACAGAGCAGAAGTATT 1018
Query 1018 TGTTGCTTTGTCTGTACTATGGGAAAGGAAAGATGCAAGGACGGCATTATCTTATGCTGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGTTGCTTTGTCTGTACTATGGGAAAGGAAAGATGCAAGGACGGCATTATCTTATGCTGA 1078
Query 1078 GAAGAGTATCAGGGTAGACGAGAGGCACATACCCGGCTACATAATGAAGGGAAATCTACT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 GAAGAGTATCAGGGTAGACGAGAGGCACATACCCGGCTACATAATGAAGGGAAATCTTCT 1138
Query 1138 TTTACAAGCAAAACGACCAGAAGCTGCAGCGATCGCCTTCAGGGCTGCCCAGAATTTGAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTACAAGCAAAACGACCAGAAGCTGCAGCGATCGCCTTCAGGGCTGCCCAGAATTTGAG 1198
Query 1198 GTCCGATCTTCGTTCATATCAAGGCTTAGTCCATTCTTATCTTGCATTTGGTAAAACCAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTCCGATCTTCGTTCATATCAAGGCTTAGTCCATTCTTATCTTGCATTTGGTAAAACCAA 1258
Query 1258 AGAAGCATTGTATACCGCCAGGGAAGCAATGAATGCAATGCCTCAATCCGCGAAGGCTCT 1317
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1259 GGAAGCATTGTATACCGCCAGAGAAGCAATGAATGCAATGCCTCAATCCGCAAAGGCTCT 1318
Query 1318 GAAATTAGTTGGTGATGTTCATGCGTT-TACATCAAGTGGCAGGGAAAAGGCAAAAAAGT 1376
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1319 GAAATTAGTTGGTGATGTTCATGC-TAGTACATCAAGTGGCAGGGAAAAGGCAAAAAAAT 1377
Query 1377 TTTACGAGTCAGGTCTGAGGCTGGAACCTGGGTACCTTGGAGCTGTGTTAGCCCTAGCTG 1436
| |||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||
Sbjct 1378 TCTACGAGTCAGGTCTGAGGCTTGAACCTGGGTACCTTGGAGCTGCCTTAGCTCTGGCTG 1437
Query 1437 AGCTTCATCTAATGGAAGGGAGGAATGGAGATGCTGTATCACTACTTGAACGATATCTCA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AGCTTCATCTAATGGAAGGGAGGAATGGAGATGCTGTATCACTACTTGAACGATATCTCA 1497
Query 1497 AAGATTATGCAGATGATTCTCTCCACGTCAAGCTAGCTCAAGTGTTTGCTGCAACGAATA 1556
|||| | || || ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1498 AAGACTGGGCTGACGATTCTCTCCATGTCAAGCTAGCTCAAGTGTTTGCTGCAACAAATA 1557
Query 1557 TGCTACAAGATTCTTTATCACACTTTCAAGCTGCATTAAGAATAAATCCACAGAATGAGG 1616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1558 TGCTACAAGATTCTTTATCACACTATCAAGCTGCATTAAGAATAAATCCACAGAATGAGG 1617
Query 1617 CAGCCAAAAAGGGACTAGATCGCTTGGAGAAACAAATGAAGGGAATAGACCCAGATGCAA 1676
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1618 CAGCCAAAAAAGGACTAGATCGCTTGGAGAAACAGATGAAGGGAATAGACCCAGATGCAA 1677
Query 1677 CAGATGAGAATGACGAGAACGATGTTGAAGATGTTGATGGAGACACCGAAGAAGCTGAGC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CAGATGAGAATGACGAGAACGATGTTGAAGATGTTGATGGAGACACCGAAGAAGCTGAGC 1737
Query 1737 TCATGTGAAGAG-TAG--AG-AGAC-AGAAGAGTGTGTAAACTGTAAAACTATCGAATCC 1791
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||||
Sbjct 1738 TCATGTGAAGAGATTCTTAGTAGACCAGAAGAGTGTGTAAACTGTAAAACTATCGAATCC 1797
Query 1792 TTAA-CATTAATATTAATAGCAAATGTCATTCCT 1824
|||| |||||||||||||||||||||||||||||
Sbjct 1798 TTAAACATTAATATTAATAGCAAATGTCATTCCT 1831
> Ahg887464 jgi|Araly1|887464|Al_scaffold_0092_4
Length=393
Score = 654 bits (354), Expect = 0.0
Identities = 377/388 (97%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 68 ATGGAGGTTCCAAAGGAGCAGATCGCGACT-TTAATAGAGCATGGGCTTTACGATTCTGC 126
||||||||||||||||| |||||||||| | || |||||||||||||| |||||||||||
Sbjct 1 ATGGAGGTTCCAAAGGATCAGATCGCGAATCTT-ATAGAGCATGGGCTCTACGATTCTGC 59
Query 127 TGAAATGCTCGGCTGCTTTCTCGTTTCTTCTCCTACTGTTAGTGCCGAAACTAGTCCTCA 186
||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 60 TGAAATGCTTGGCTGCTTTCTCGTTTCTTCTTCTACTGTTAGCGCCGAAACTAGTCCTCA 119
Query 187 GCTCAAGGCGGAGAATTTGATTCTACTGGGTGATGCTTTATTTCATCAGAGAGAACACCG 246
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 GCTCAAGGCGGAGAATTTGATTCTACTGGGCGATGCTTTATTTCATCAGAGAGAACACCG 179
Query 247 GAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCGAAGCAAAG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCGAAGCAAAG 239
Query 307 CTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACCAGATCATCTGTGAATGCCTCCAG 366
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 240 CTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACAAGATCATCTGTGAATGCCTCTAG 299
Query 367 CATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCACTTTGCTCT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCACTTTGCTCT 359
Query 427 TAATGAAACAAAAGCTGCGATTGCTGAG 454
||||||||||||||||||||||||||||
Sbjct 360 TAATGAAACAAAAGCTGCGATTGCTGAG 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5