BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39100.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934665 jgi|Araly1|934665|scaffold_402653.1 887 0.0
Ahg952596 jgi|Araly1|952596|scaffold_9200006.1 784 0.0
> Ahg934665 jgi|Araly1|934665|scaffold_402653.1
Length=840
Score = 887 bits (480), Expect = 0.0
Identities = 590/639 (92%), Gaps = 23/639 (4%)
Strand=Plus/Plus
Query 312 AAAATACCATAAGGAGCAATTACCAATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 371
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 193 AAAATACCACAAGGAGCATTTACCGATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 252
Query 372 GAATAATCCTTCCGATCGCCGGAGGATAATTCAAAGGTCGAGGGATGTTTTGGAAAACTC 431
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 253 GAATAATCCTTCCGGTCGCCGGAGGATAATTCGAAGGTGGAGGGATGTTTTGGAAAACTC 312
Query 432 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGACCAGGTTCAGTTCC 491
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 313 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGGCCTGGTTCAGTTCC 372
Query 492 TGATTCTGTTATCTTCCAGCGAAAGCTTCAGTGGCGAGCTA------G--C---AT---- 536
||||||| | ||||||||||||||||||||||||||||||| | | ||
Sbjct 373 TGATTCTATCATCTTCCAGCGAAAGCTTCAGTGGCGAGCTAGTGTTGGCTCTAAATGCAG 432
Query 537 -ATACAC--TAAGCAATTACGAGCTGTTCGATTACATTCAAGGC---GCTTGGAACTAAG 590
||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 433 CATATACGATAAGCAATTACGAGCTGTTCGATTACATTCGAGGCGAAGCTTGGAACTATG 492
Query 591 TTTGGCGGTGAATGATTACACCAA-AGCAAAGATAACTGAAAGAATTGAGCCATGGATTA 649
|||||||| ||||||| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 493 TTTGGCGGGGAATGATCAGA-CAAGAGCAAAGATAACTGAAAGAATTGAGCCATGGATTA 551
Query 650 GAAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCCTCAGTTATTGTTCATTTTGCGT 709
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 552 GAAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCATCAATTATTGTTCATTTTGCGT 611
Query 710 CAGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAAACCGGGCAGACCGGGA 769
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 612 CAGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAATCCGGGCGGACCGGGA 671
Query 770 TGTTGGTGGAAGATGAAGTCTCCTCTCTTCGAAAATTCTTGTCTGATAAGGTGGATATAT 829
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 672 TGTTGGTGGAAGACGAAGTCTCCTCTCTCCGAAAATTCTTGTCTGATAAGGTGGATATAT 731
Query 830 TTTGGCATGAACTAAGATGTTTTGCGGAGAGTATACTCACGATGGAGACTTATGATGCAG 889
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 732 TTTGGCATGAACTAAGATGTTTCGCGGAGAGTATTCTCACGATGGAGACGTATGATGCAG 791
Query 890 TGGTTGAATACAATGAGGTGGAGTAATAGCAGTaaaaaa 928
||||||||||||||||||||| |||||||||||||||||
Sbjct 792 TGGTTGAATACAATGAGGTGGCGTAATAGCAGTAAAAAA 830
Score = 183 bits (99), Expect = 2e-45
Identities = 130/145 (90%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 93 GAAATTTGCAGGGAGAGCAATATTTCCTGCTTTACAGGG-GAAATCGTGTCCGATATGCC 151
||||||||| | ||||| ||| || ||||||||| ||| ||||||||||| ||||||||
Sbjct 37 GAAATTTGCTGAGAGAGTAATCTTAACTGCTTTAC-GGGAGAAATCGTGTCTGATATGCC 95
Query 152 TCGAAAATCTAACCGAGCGAAGATCCGCCGCCGTGATCACGGTGTGCAAGCACGGATACT 211
|||||||||||||||||||| ||||||||||||| || || || || |||||||||||||
Sbjct 96 TCGAAAATCTAACCGAGCGACGATCCGCCGCCGTTATTACAGTATGTAAGCACGGATACT 155
Query 212 GCCTTGCTTGTATTCGGAAGTGGAG 236
|||||||||||||||||||||||||
Sbjct 156 GCCTTGCTTGTATTCGGAAGTGGAG 180
> Ahg952596 jgi|Araly1|952596|scaffold_9200006.1
Length=771
Score = 784 bits (424), Expect = 0.0
Identities = 515/555 (93%), Gaps = 21/555 (4%)
Strand=Plus/Plus
Query 312 AAAATACCATAAGGAGCAATTACCAATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 371
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 193 AAAATACCACAAGGAGCATTTACCGATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 252
Query 372 GAATAATCCTTCCGATCGCCGGAGGATAATTCAAAGGTCGAGGGATGTTTTGGAAAACTC 431
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 253 GAATAATCCTTCCGGTCGCCGGAGGATAATTCGAAGGTGGAGGGATGTTTTGGAAAACTC 312
Query 432 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGACCAGGTTCAGTTCC 491
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 313 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGGCCTGGTTCAGTTCC 372
Query 492 TGATTCTGTTATCTTCCAGCGAAAGCTTCAGTGGCGAGCTA------G--C---AT---- 536
||||||| | ||||||||||||||||||||||||||||||| | | ||
Sbjct 373 TGATTCTATCATCTTCCAGCGAAAGCTTCAGTGGCGAGCTAGTGTTGGCTCTAAATGCAG 432
Query 537 -ATACAC--TAAGCAATTACGAGCTGTTCGATTACATTCAAGGC---GCTTGGAACTAAG 590
||| || |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 433 CATATACGATAAGCAATTACGAGCTGTTCGATTACATTCGAGGCGAAGCTTGGAACTAAG 492
Query 591 TTTGGCGGTGAATGATTACACCAAAGCAAAGATAACTGAAAGAATTGAGCCATGGATTAG 650
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 TTTGGCGGTGAATGATCACACCAAAGAAAAGATAACTGAAAGAATTGAGCCATGGATTAG 552
Query 651 AAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCCTCAGTTATTGTTCATTTTGCGTC 710
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 553 AAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCATCAATTATTGTTCATTTTGCGTC 612
Query 711 AGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAAACCGGGCAGACCGGGAT 770
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 613 AGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAATCCGGGCATACCGGGAT 672
Query 771 GTTGGTGGAAGATGAAGTCTCCTCTCTTCGAAAATTCTTGTCTGATAAGGTGGATATATT 830
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 673 GTTGGTGGAAGATGAAGTCTCCTCTCTCCGAAAATTCTTGTCTGATAAGGTGGATATATT 732
Query 831 TTGGCATGAACTAAG 845
|||||||||||||||
Sbjct 733 TTGGCATGAACTAAG 747
Score = 183 bits (99), Expect = 2e-45
Identities = 130/145 (90%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 93 GAAATTTGCAGGGAGAGCAATATTTCCTGCTTTACAGGG-GAAATCGTGTCCGATATGCC 151
||||||||| | ||||| ||| || ||||||||| ||| ||||||||||| ||||||||
Sbjct 37 GAAATTTGCTGAGAGAGTAATCTTAACTGCTTTAC-GGGAGAAATCGTGTCTGATATGCC 95
Query 152 TCGAAAATCTAACCGAGCGAAGATCCGCCGCCGTGATCACGGTGTGCAAGCACGGATACT 211
|||||||||||||||||||| ||||||||||||| || || || || |||||||||||||
Sbjct 96 TCGAAAATCTAACCGAGCGACGATCCGCCGCCGTTATTACAGTATGTAAGCACGGATACT 155
Query 212 GCCTTGCTTGTATTCGGAAGTGGAG 236
|||||||||||||||||||||||||
Sbjct 156 GCCTTGCTTGTATTCGGAAGTGGAG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5