BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39110.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952599 jgi|Araly1|952599|scaffold_9200009.1 2069 0.0
Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1 1971 0.0
> Ahg952599 jgi|Araly1|952599|scaffold_9200009.1
Length=1347
Score = 2069 bits (1120), Expect = 0.0
Identities = 1275/1351 (94%), Gaps = 6/1351 (0%)
Strand=Plus/Plus
Query 85 TCACAGCATTCCATTCATCCTCATGAATAATTCTACATCAGTGAAGAGGCTGGTTTCATC 144
||||| |||| || |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 TCACAACATTTCAGTCATCCTCATGAATAATTCTACATCAGTGAGGAGGCTGGTTTCGTC 60
Query 145 TAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 204
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 120
Query 205 TAGAAAGTTTGGTT-CAGCTACGATGGCTAGAGGAGGATCAGGGTCTGAGTTTAATTCAG 263
||||||||||||| || |||||||||||||||||||||||||||||| ||||| || |
Sbjct 121 GAGAAAGTTTGGTTCCA-TTACGATGGCTAGAGGAGGATCAGGGTCTGAATTTAACTCTG 179
Query 264 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTCCTCTCAGAGACACACAGTA 323
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTTCTCTCAGAGACACACAGTA 239
Query 324 ATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAACCGCTACCAAGAACTTCAGCCGCT 383
| ||||||||||| |||| |||||||||||||||||| |||||||| || ||||||||||
Sbjct 240 ACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAACTGCTACCAAAAATTTCAGCCGCT 299
Query 384 CCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 443
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 359
Query 444 AAGATTCTCGTAAAAAGATTGATATTGCAGTTAAACAACTTAGTAGAAGAGGTCTACAGG 503
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 360 AAGATTCTCGTAAGAAGATTGAAATTGCAGTTAAACAACTCAGTAGAAGAGGTCTACAGG 419
Query 504 GGCATAAAGAATGGGTGACAGAGGTAAATGTATTGGGAGTAGTGGAGCATCCGAATCTGG 563
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GTCATAAAGAATGGGTGACAGAGGTAAATGTACTGGGAGTAGTGGAGCATCCGAATCTGG 479
Query 564 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAACGGCTACTTGTTT 623
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAAAGGCTACTTGTTT 539
Query 624 ACGAATACGTACAAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATAGTCACTC 683
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ACGAATACGTACCAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATTGTCACTC 599
Query 684 CTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAAGACACTGCTAGAGGACTCGCTTATC 743
|||| ||||||||||||||| | ||||||||||| ||||||||| ||||||| |||||||
Sbjct 600 CTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAGGACACTGCTCGAGGACTTGCTTATC 659
Query 744 TTCATCAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCTAATATCCTTC 803
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 660 TTCATGAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCCAATATTCTTC 719
Query 804 TTGATGAGAACTGGAATGCAAAACTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCAG 863
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 720 TTGATGAGAATTGGAATGCAAAGCTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCTG 779
Query 864 ATGGAATCACTCACGTTTCCACCGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 923
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGGAATCACTCATGTCTCCACTGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 839
Query 924 ACATCCAAACAGGACACCTCACGGCTAAGAGCGACGTGTGGAGCTACGGAATCTTTTTAT 983
| |||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||
Sbjct 840 ATATCCAAACAGGACACCTCACTGCCAAGAGTGACGTGTGGAGCTACGGAATCTTTCTAT 899
Query 984 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAACA 1043
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAATA 959
Query 1044 TCTTGGAGTGGATCAGACCACACTTATCCGACATAAAGAAGTTCAAAATGATCATCGACC 1103
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 960 TCCTGGAGTGGATCAGACCACACTTGTCCGACATAAAGAAGTTCAAGATGATCATCGACC 1019
Query 1104 CAAGACTTGAAGGAAACTACTACCTCAAGTCAGCATTAAAGCTAGCTGCAGTTGCTAACC 1163
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1020 CAAGACTTGAAGGAAACTACTACCTCAAATCAGCATTGAAGCTAGCTGCAGTTGCTAACC 1079
Query 1164 GGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1223
||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1080 GGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1139
Query 1224 AAAGGATAGTGGAAACATCATCAGATGGTGCTCCTTCAGGACTGCCATTGATGAAAAGCT 1283
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 1140 AAAGGATAGTGGAAACATCA---GATGATGCTCCTTCAGGACTGCCATTGATGAAGAGCT 1196
Query 1284 TGACACCTAAAGATGCATTCGAAGCCTCAAGAAGGGAGAGAGTTAAGAGAAGATTTGTTG 1343
|||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1197 TGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGAGAGAGAGTTAAAAGAAGATTTGTTG 1256
Query 1344 AACTGTTAATTGGAGAAAATGGTTGTCCCAATTTACCTACTTGGTCTCATAAACTTGTTA 1403
|||| || || |||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1257 AACTTTTGATCGGAGAAAATGGTTGTCCCAATTTACCCACTTGGTCTCCTAAACTTGTTA 1316
Query 1404 CTTCTATTTGAtttttttGAGAGAACAAACT 1434
|||||| |||||||||| |||||||||||||
Sbjct 1317 CTTCTACTTGATTTTTT-GAGAGAACAAACT 1346
> Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1
Length=1387
Score = 1971 bits (1067), Expect = 0.0
Identities = 1310/1422 (92%), Gaps = 37/1422 (3%)
Strand=Plus/Plus
Query 1 Gtcttctctcttctcctcttatctctttctctaccattttcttttgctttaaagctctct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GTCTTCTCTCTTCTCCTCTTATCTCTTTCTCTGCCATTTTCTTTTGCTTTAAAGCTCTCT 60
Query 61 cAATCATGATCATGAAGACCCCCATCACAGCATTCCATTCATCCTCATGAATAATTCTAC 120
||||||||| |||||||| |||||||||| |||| || ||||||||||||||||||||||
Sbjct 61 CAATCATGAACATGAAGATCCCCATCACAACATTTCAGTCATCCTCATGAATAATTCTAC 120
Query 121 ATCAGTGAAGAGGCTGGTTTCATCTAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGTGAGGAGGCTGGTTTCGTCTAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180
Query 181 AACTCAGGATGATGAAGCTAAGACTAGAAAGTTTGGTTC-AGCTACGATGGCTAGAGGAG 239
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 181 AACTCAGGATGATGAAGCTAAGACGAGAAAGTTTGGTTCCAT-TACGATGGCTAGAGGAG 239
Query 240 GATCAGGGTCTGAGTTTAATTCAGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 240 GATCAGGGTCTGAATTTAACTCTGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299
Query 300 ACGTCCTCTCAGAGACACACAGTAATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAA 359
|||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 300 ACGTTCTCTCAGAGACACACAGTAACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAA 359
Query 360 CCGCTACCAAGAACTTCAGCCGCTCCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCT 419
| |||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 360 CTGCTACCAAAAATTTCAGCCGCTCATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCT 419
Query 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAAAAGATTGATATTGCAGTTAAAC 479
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | |
Sbjct 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAGAAGATTGAAATTGCAGGT---C 476
Query 480 AACTTAGTAGAA-GAGGTCTACAGGGGCATAAAGAATGGGTGACAGAGGTAAATGTATTG 538
| | | |||| | ||| |||| || |||| || | || | || | ||| |
Sbjct 477 A--TAA--AGAATG-GGTG-ACAGAGG--TAAA---TG--T-ACTG-GG-A---GTA--G 515
Query 539 GGAGTAGTGGAGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 598
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 ----T-G-G-AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 568
Query 599 AGAGGGATCCAACGGCTACTTGTTTACGAATACGTACAAAACAGAAGTGTTCAAGACCAT 658
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 569 AGAGGGATCCAAAGGCTACTTGTTTACGAATACGTACCAAACAGAAGTGTTCAAGACCAT 628
Query 659 TTATCCAATCGTTTTATAGTCACTCCTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAA 718
||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||
Sbjct 629 TTATCCAATCGTTTTATTGTCACTCCTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAG 688
Query 719 GACACTGCTAGAGGACTCGCTTATCTTCATCAAGGCATGGAGTTTCAGATCATCTTTAGG 778
||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 689 GACACTGCTCGAGGACTTGCTTATCTTCATGAAGGCATGGAGTTTCAGATCATCTTTAGG 748
Query 779 GATTTCAAATCCTCTAATATCCTTCTTGATGAGAACTGGAATGCAAAACTCTCGGATTTC 838
|||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 749 GATTTCAAATCCTCCAATATTCTTCTTGATGAGAATTGGAATGCAAAGCTCTCGGATTTC 808
Query 839 GGACTGGCTCGAATGGGTCCTTCAGATGGAATCACTCACGTTTCCACCGCGGTTGTAGGG 898
||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 809 GGACTGGCTCGAATGGGTCCTTCTGATGGAATCACTCATGTCTCCACTGCGGTTGTAGGG 868
Query 899 ACCATTGGTTATGCAGCACCGGAATACATCCAAACAGGACACCTCACGGCTAAGAGCGAC 958
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 869 ACCATTGGTTATGCAGCACCGGAATATATCCAAACAGGACACCTCACTGCCAAGAGTGAC 928
Query 959 GTGTGGAGCTACGGAATCTTTTTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 1018
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 929 GTGTGGAGCTACGGAATCTTTCTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 988
Query 1019 AACCGCCCAAGAAACGAGCAGAACATCTTGGAGTGGATCAGACCACACTTATCCGACATA 1078
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 989 AACCGCCCAAGAAACGAGCAGAATATCCTGGAGTGGATCAGACCACACTTGTCCGACATA 1048
Query 1079 AAGAAGTTCAAAATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAGTCAGCA 1138
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1049 AAGAAGTTCAAGATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAATCAGCA 1108
Query 1139 TTAAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACA 1198
|| ||||||||||||||||||||||||||||||||||| || ||||| || |||||||||
Sbjct 1109 TTGAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACA 1168
Query 1199 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCATCAGATGGTGCTCCT 1258
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1169 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCA---GATGATGCTCCT 1225
Query 1259 TCAGGACTGCCATTGATGAAAAGCTTGACACCTAAAGATGCATTCGAAGCCTCAAGAAGG 1318
|||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 1226 TCAGGACTGCCATTGATGAAGAGCTTGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGA 1285
Query 1319 GAGAGAGTTAAGAGAAGATTTGTTGAACTGTTAATTGGAGAAAATGGTTGTCCCAATTTA 1378
||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1286 GAGAGAGTTAAAAGAAGATTTGTTGAACTTTTGATCGGAGAAAATGGTTGTCCCAATTTA 1345
Query 1379 CCTACTTGGTCTCATAAACTTGTTACTTCTATTTGAtttttt 1420
|| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 1346 CCCACTTGGTCTCCTAAACTTGTTACTTCTACTTGATTTTTT 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5