BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39120.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952600 jgi|Araly1|952600|scaffold_9200010.1 1808 0.0
Ahg934667 jgi|Araly1|934667|scaffold_402655.1 1803 0.0
> Ahg952600 jgi|Araly1|952600|scaffold_9200010.1
Length=1207
Score = 1808 bits (979), Expect = 0.0
Identities = 1109/1171 (95%), Gaps = 11/1171 (1%)
Strand=Plus/Plus
Query 1 ATGCTCTCTATTCGCCGCCATGCCAAAACCGTAGCTTCCTCCTGCACCAACCTTACTCAG 60
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 21 ATGCTCTATATTTGCCGCCATGCCAAAACCCTAGCTTCCTCCTGCACCAACCTTACTCAG 80
Query 61 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 140
Query 121 GAACACATCCTCCGATCATCTCAGCTCAAATCCGTCGTCTCTCTTAAGAACTGTATCGTC 180
|||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 141 GAACACATTCTCCGATCATCTCAGCTCAAATCCGTCATCGGTCTCAAGAACTGTATCGTC 200
Query 181 CAGGAACCTAATCGCTGCATTCCGATCTCTGCCATCTCCAAGAAGACTCGTCAATTCGAT 240
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 201 CAGGATCCTAATCGCTGCATTCCGATATCTGCCATCTCCAAGAAGACGCGTCAATTCGAT 260
Query 241 GTATCAACCAAAATCGCTCACTTCTTAAGGAAGTTTCCTTCAATCTTTGAAGAGTTCGTT 300
|||||||||||||||||||| || |||||||| ||||| ||| ||||||| |||||||||
Sbjct 261 GTATCAACCAAAATCGCTCAGTTTTTAAGGAAATTTCCGTCAGTCTTTGAGGAGTTCGTT 320
Query 301 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCAACAGAACTAGATAGG 360
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 321 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCTACAGAGCTCGATAGG 380
Query 361 CAAGAGAGAGTCGTATACCAAACTTCTGCAGATGATTTGCGTGATAGGTTGAAGAAATTG 420
||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 381 CAAGAGAGAATCGTTTACCAAACTTCCGCAGAGGATTTGCGTGATAGGTTGAAGAAATTG 440
Query 421 ATTCTGATGAGTAAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTAT 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ATTCTGATGAGTGAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTAT 500
Query 481 TTAGGTTTACCTGATGATTACTTGCAGTTTCCAGATATGAATTTAGATTCTTCGTTTAGG 540
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 501 TTAGGTTTGCCTGATGATTACTTGCAATTTCCAGAGATGAATTTAGATTCTTCGTTTAGG 560
Query 541 TTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGATTATAATGGAGGAGATAAG 600
||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 561 TTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGACTATAATGGAG-A--TAAG 617
Query 601 GTTTTGTCTGTGTTGCagaagaatgcaatgaagaagaga--a-ga-g-g-agaagtg-ag 653
||||||||||||||||||||||||||||||||||||||| | || | | |||| || |
Sbjct 618 GTTTTGTCTGTGTTGCAGAAGAATGCAATGAAGAAGAGACGAAGAAGAGGAGAATTGGA- 676
Query 654 tttagaagagaTTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAGAT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 677 TTTAGAAGAGATTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAAAT 736
Query 714 TGAAGATTGGTTAATGGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATTC 773
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGAAGATTGGTTAAAAGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATTC 796
Query 774 ATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGTTTTCTTCATGAATT 833
|||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 797 ATGTTTGGATTCAAGTAGTGATGTAGCAGAGAAGAGAGTTGTTGGGTTTCTTCATGAATT 856
Query 834 GCTTTGTCTTTTCGTTGAGCATTCTGCTGAGAGGAAGAAGTTGTTATGTCTCAAGAAGCA 893
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 857 GCTTTGTCTTTTCGTCGAGCATTCCGCAGAGAGGAAGAAGTTGTTATGTCTCAAGAAGCA 916
Query 894 TTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTCTACTT 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 917 TTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTTTACTT 976
Query 954 GTCTATGAAGAATAAAACTTGTACAGCTATTCTTAGAGAGCCTTATAGAGATAAAGCTAG 1013
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 977 GTCTATGAAGAACAAAACTTGTACAGCTATTCTAAGAGAGCCTTATAGAGATAAAGCCAG 1036
Query 1014 TGTTGAAACACATCCTGTGTTGGGGGTAAGGAAGAAATACATCCAGTTGATGAAGAATTC 1073
||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1037 TGTAGAAACACATCCTGTGTTAGCTGTAAGGAAGAAATACATCCAGTTGATGAAGAATTC 1096
Query 1074 AGAGTTGATTCTGAAGAGTCGAAGGAATAGTTTCGGGTTTAGGGACGAAGGGGTTGTAGA 1133
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1097 AGAGTTGATTCTGAAGAGTAGAAGGAATCGTTTCGGGTTTAGGGACGAAGGGATTGTAGA 1156
Query 1134 TAAAGATTTGGATTTGGATTTTGAAGGCTAA 1164
||||||||||||||||||||||||||||||
Sbjct 1157 GAAAGATTTGGATTTGGATTTTGAAGGCTAA 1187
> Ahg934667 jgi|Araly1|934667|scaffold_402655.1
Length=1207
Score = 1803 bits (976), Expect = 0.0
Identities = 1109/1172 (95%), Gaps = 13/1172 (1%)
Strand=Plus/Plus
Query 1 ATGCTCTCTATTCGCCGCCATGCCAAAACCGTAGCTTCCTCCTGCACCAACCTTACTCAG 60
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 21 ATGCTCTATATTCGCCGCCATGCCAAAACCCTAGCTTCCTCCTGCACCAACCTTACTCAG 80
Query 61 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 140
Query 121 GAACACATCCTCCGATCATCTCAGCTCAAATCCGTCGTCTCTCTTAAGAACTGTATCGTC 180
|||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 141 GAACACATTCTCCGATCATCTCAGCTCAAATCCGTCATCGGTCTCAAGAACTGTATCGTC 200
Query 181 CAGGAACCTAATCGCTGCATTCCGATCTCTGCCATCTCCAAGAAGACTCGTCAATTCGAT 240
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 201 CAGGATCCTAATCGCTGCATTCCGATATCTGCCATCTCCAAGAAGACGCGTCAATTCGAT 260
Query 241 GTATCAACCAAAATCGCTCACTTCTTAAGGAAGTTTCCTTCAATCTTTGAAGAGTTCGTT 300
|||||||| ||||||||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 261 GTATCAACAAAAATCGCTCAGTTTTTAAGGAAATTTCCTTCAATCTTCGAGGAGTTCGTT 320
Query 301 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCAACAGAACTAGATAGG 360
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
Sbjct 321 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCTACAGAGCTCGATAAG 380
Query 361 CAAGAGAGAGTCGTATACCAAACTT-CTGCAGATGATTTGCGTGATAGGTTGAAGAAATT 419
||||||||| |||||||| |||||| | ||||| |||||||| |||||||||||||||||
Sbjct 381 CAAGAGAGAATCGTATACGAAACTTAC-GCAGAGGATTTGCGGGATAGGTTGAAGAAATT 439
Query 420 GATTCTGATGAGTAAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTA 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 440 GATTCTGATGAGTAAAGATAATGTTTTGCCATTAAGTATAGTTCAAGGAATGAAATGGTA 499
Query 480 TTTAGGTTTACCTGATGATTACTTGCAGTTTCCAGATATGAATTTAGATTCTTCGTTTAG 539
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 500 TTTAGGTTTACCTGATGATTACTTGCAATTTCCAGAGATGAATTTAGATTCTTCGTTTAG 559
Query 540 GTTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGATTATAATGGAGGAGATAA 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 560 GTTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGACTATAATGGAG-A--TAA 616
Query 600 GGTTTTGTCTGTGTTGCagaagaatgcaatgaagaagaga--a-ga-g-g-agaagtg-a 652
|||||||||||||||||||||||||||||||||||||||| | || | | |||| || |
Sbjct 617 GGTTTTGTCTGTGTTGCAGAAGAATGCAATGAAGAAGAGAGGAAGAAGAGGAGAATTGGA 676
Query 653 gtttagaagagaTTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 -TTTAGAAGAGATTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAAA 735
Query 713 TTGAAGATTGGTTAATGGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATT 772
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTGAAGATTGGTTAAAAGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATT 795
Query 773 CATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGTTTTCTTCATGAAT 832
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 796 CATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGGTTTCTTCATGAAT 855
Query 833 TGCTTTGTCTTTTCGTTGAGCATTCTGCTGAGAGGAAGAAGTTGTTATGTCTCAAGAAGC 892
|||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 856 TGCTTTGTCTTTTCGTCGAGCATTCCGCAGAGAGGAAGAACTTGTTATGTCTCAAGAAGC 915
Query 893 ATTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTCTACT 952
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 916 ATTTCGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTTTACT 975
Query 953 TGTCTATGAAGAATAAAACTTGTACAGCTATTCTTAGAGAGCCTTATAGAGATAAAGCTA 1012
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 976 TGTCTATGAAGAACAAAACTTGTACAGCTATTCTAAGAGAGCCTTATAGAGATAAAGCCA 1035
Query 1013 GTGTTGAAACACATCCTGTGTTGGGGGTAAGGAAGAAATACATCCAGTTGATGAAGAATT 1072
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1036 GTGTAGAAACACATCCTGTGTTAGCTGTAAGGAAGAAATACATCCAGTTGATGAAGAATT 1095
Query 1073 CAGAGTTGATTCTGAAGAGTCGAAGGAATAGTTTCGGGTTTAGGGACGAAGGGGTTGTAG 1132
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1096 CAGAGTTGATTCTGAAGAGTAGAAGGAATCGTTTCGGGTTTAGGGACGAAGGGATTGTAG 1155
Query 1133 ATAAAGATTTGGATTTGGATTTTGAAGGCTAA 1164
| ||||||||||||||||||||||||||||||
Sbjct 1156 AGAAAGATTTGGATTTGGATTTTGAAGGCTAA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5