BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G39130.1

Length=2067
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901838 jgi|Araly1|901838|Al_scaffold_0004_2488                   2700    0.0  
  Ahg359293 jgi|Araly1|359293|fgenesh1_pg.C_scaffold_92000007         1496    0.0  
  Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558           795    0.0  


> Ahg901838 jgi|Araly1|901838|Al_scaffold_0004_2488
Length=1650

 Score = 2700 bits (1462),  Expect = 0.0
 Identities = 1594/1657 (96%), Gaps = 11/1657 (1%)
 Strand=Plus/Plus

Query  200   ATGAATCACGTACCGTCTGATCAAAGCTTTTACATTGAGAGCGAGGACGAAGACGATAGG  259
             |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1     ATGAATCACGTACCTTCTGATCAAAGCTTTTACATTGAGAGCGAAGACGAAGACGATAGG  60

Query  260   AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTCTGATGATGTTTATGAT  319
             ||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||
Sbjct  61    AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTC---TGATGCTTATGAT  117

Query  320   GAAAACCAAGCTCACATTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG  379
             |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  118   GAAAACCAAGCTCAGACTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG  177

Query  380   CAGTCGATTGATCTTTATAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGGAATAAT  439
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  178   CAGTCGATTGATCTTTACAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGAAATAAT  237

Query  440   TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTGGT-TTGATAAGAAGACATACTCC  498
             ||||||||||||||||||||||||||||||||||||  | || |||||||||||||||||
Sbjct  238   TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTTCTCTT-ATAAGAAGACATACTCC  296

Query  499   GGAATCATTACCTACTGTTACAAAACCTTTGTTAGAAGA-ACAAGCAGATGAACAAGCAC  557
             ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||
Sbjct  297   GGAATCATTACCTGCTGTTACAAAACCTTTGTTAGAA-ACACAAGCAGATGAACAGGCAC  355

Query  558   TACCAAAACATAGACTTAGCTCTCAGGGCTTACTCTCTCCTATTCCTTCGAGGAGGGGTT  617
              |||||||||||||||||||||||| ||||| || |||||||||||||||||||||  ||
Sbjct  356   CACCAAAACATAGACTTAGCTCTCATGGCTTGCTTTCTCCTATTCCTTCGAGGAGGCATT  415

Query  618   CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCAATGTCTCGTAATA  677
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  416   CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCTATGTCTCGTAATA  475

Query  678   GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT  736
             |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  476   GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTT-TTATGTGGGGTTGGAATACTT  534

Query  737   TCAACGCCTTATGCTGCCAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT  796
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  535   TCAACGCCTTATGCTGCAAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT  594

Query  797   GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTATTGCCTCGACAGTGAGTCTGAC  856
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  595   GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTACTGCCTCGACAGTGAGTCTGAC  654

Query  857   CTCGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC  916
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  655   CTTGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC  714

Query  917   TCGATTGTACTCTACTTGGAGCTATACGCATGCTGTGTGGAATATATAATATTGGAGAGT  976
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  715   TCGATTGTACTCTACTTGGAGCTATACGCTTGCTGTGTGGAATATATAATATTGGAGAGT  774

Query  977   GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGATTTCAGTTAGAT  1036
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  775   GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGGTTTCAGTTAGAT  834

Query  1037  GCACGCCATCTATTTGCATTGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGCTCAGA  1096
             || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  835   GCCCGCCATCTATTTGCATTGCTAACCACTCTCGCGGTTCTCCCCACCGTTTGGCTCAGA  894

Query  1097  GATCTCAGCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTT  1156
             |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  895   GATCTCAGTGTACTGAGTTATATCTCAGCTGGAGGGGTGATTGCATCGGTGCTAGTGGTT  954

Query  1157  TTATGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA  1216
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  955   TTGTGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA  1014

Query  1217  CTAAACTTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACAT  1276
             |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  1015  CTAAACTTGTCAACTTTACCTGTAGCTATAGGACTATATGGTTACTGCTACTCAGGACAT  1074

Query  1277  GCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC  1336
             |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1075  GCTGTTTTTCCCAACATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC  1134

Query  1337  TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG  1396
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1135  TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG  1194

Query  1397  ATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCA  1456
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| 
Sbjct  1195  ATGTTTGGAGAATCAACACAATCACAGTTTACTCTCAACTTGCCTCAAGATTTGGTTGCT  1254

Query  1457  ACTAAGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATA  1516
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1255  ACTAAGATTGCCGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATT  1314

Query  1517  TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGG  1576
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1315  TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATAAGGTCACATTGG  1374

Query  1577  TACGCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTAT  1635
             ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| || ||
Sbjct  1375  TACGCCATCGGCATTAGAACCGC-ATTGGTCTTCTCTACGCTGCTTGTTGGTCTTGCAAT  1433

Query  1636  TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT  1695
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1434  TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT  1493

Query  1696  AATACTTCCTCCAGCTTGTTTCTTGAGCATTGTAAGGAGAAAAGTTACCCCGACCCAGAT  1755
             ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct  1494  AATACTTCCTCCAGCGTGTTTCTTGAGCATCGTACGGAGAAAAGTTACCCCGACCCAGAT  1553

Query  1756  GATGTTGTGTGTCTTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC  1815
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1554  GATGTTGTGTGTATTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC  1613

Query  1816  AGCTCTTTCCAAGATCGTTGAGAAATTGACCAACTGA  1852
             |||||| |||||||||||||||||||||| || ||||
Sbjct  1614  AGCTCTCTCCAAGATCGTTGAGAAATTGAGCAGCTGA  1650


> Ahg359293 jgi|Araly1|359293|fgenesh1_pg.C_scaffold_92000007
Length=909

 Score = 1496 bits (810),  Expect = 0.0
 Identities = 875/907 (96%), Gaps = 2/907 (0%)
 Strand=Plus/Plus

Query  947   TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT  1006
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4     TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT  63

Query  1007  GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGCCATCTATTTGCATTGCTAACCACT  1066
             ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  64    GCCTTAAGTATTGGAGGGTTTCAGTTAGATGCCCGCCATCTATTTGCATTGCTAACCACT  123

Query  1067  CTCGCCGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGCGTACTTAGTTATATCTCTGCT  1126
             ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct  124   CTCGCGGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGTGTACTGAGTTATATCTCAGCT  183

Query  1127  GGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTTTGTTTTGGATTGGTTTGGTAGAT  1186
             ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  184   GGAGGGGTGATTGCATCGGTGCTAGTGGTTTTGTGTTTGTTTTGGATTGGTTTGGTAGAT  243

Query  1187  GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACATTACCTGTGGCTATA  1246
             |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  244   GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACTTTACCTGTAGCTATA  303

Query  1247  GGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATG  1306
             ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  304   GGACTATATGGTTACTGCTACTCAGGACATGCTGTTTTTCCCAACATTTATACTTCTATG  363

Query  1307  GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG  1366
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364   GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG  423

Query  1367  TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTT  1426
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  424   TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAATCACAGTTT  483

Query  1427  ACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGGTGGTC  1486
             |||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||
Sbjct  484   ACTCTCAACTTGCCTCAAGATTTGGTTGCTACTAAGATTGCCGTGTGGACTACGGTGGTC  543

Query  1487  AATCCATTTACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTG  1546
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  544   AATCCATTTACCAAATATGCTTTGACCATTTCTCCAGTAGCAATGAGTCTTGAGGAGTTG  603

Query  1547  ATACCATCAAGGCATATCAGGTCACATTGGTACGCCATCGGCATTAGAACC-CTATTGGT  1605
             ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct  604   ATACCATCAAGGCATATAAGGTCACATTGGTACGCCATCGGCATTAGAACCGC-ATTGGT  662

Query  1606  CTTCTCTACTCTGCTTGTTGGTCTCGCTATTCCCTTCTTTGGTCTTGTCATGTCATTGAT  1665
             ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  663   CTTCTCTACGCTGCTTGTTGGTCTTGCAATTCCCTTCTTTGGTCTTGTCATGTCATTGAT  722

Query  1666  TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCTTGTTTCTTGAGCAT  1725
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  723   TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCGTGTTTCTTGAGCAT  782

Query  1726  TGTAAGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTCTTAATCATCATAGTAGG  1785
              ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  783   CGTACGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTATTAATCATCATAGTAGG  842

Query  1786  AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTTTCCAAGATCGTTGAGAAATTGAC  1845
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  843   AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTCTCCAAGATCGTTGAGAAATTGAG  902

Query  1846  CAACTGA  1852
             || ||||
Sbjct  903   CAGCTGA  909


> Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558
Length=1677

 Score =  795 bits (430),  Expect = 0.0
 Identities = 835/1026 (81%), Gaps = 45/1026 (4%)
 Strand=Plus/Plus

Query  637   ATCATCCATGGTGTCTCATGAGATTCCAATGTCTC-GTAATAGCTCATACGGACAAGCTG  695
             ||||||||||||||||||||| ||  |||| || |  | ||||||| |  ||||| ||||
Sbjct  405   ATCATCCATGGTGTCTCATGAAATGGCAATCTC-CAATGATAGCTCGTTTGGACAGGCTG  463

Query  696   TACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT-TCAACGCCTTATGCTGC  753
             | || |||||| |||| ||| || ||||||||||||||| || ||||| || ||||||| 
Sbjct  464   TTCTTAATGGAGTGAATGTT-TTATGTGGGGTTGGAATA-TTGTCAACACCATATGCTGT  521

Query  754   CAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATATGGTCTTCTTTCTTTCTA  813
              || |||||||||||||| |||||||| || || |||| || |||| |||||| ||| ||
Sbjct  522   GAAGGAAGGAGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTA  581

Query  814   CACCGGAATCCTCCTT-CGTTATTGCCTCGACAGTGAGTCTGACCTCGAAACCTATCCCG  872
             ||||||  | ||  || || || |||||||| ||  |  | ||  || | |||||||| |
Sbjct  582   CACCGGTTTGCT-TTTGCGGTACTGCCTCGATAGCCACCCCGATGTCCAGACCTATCCTG  640

Query  873   ACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTCTC-GATTGTACTCTAC  931
             | |||||||| || || |||||| | || || || ||| | ||||| | |  ||||||| 
Sbjct  641   ATATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCTG-TAATACTCTA-  698

Query  932   T-TGGAGCTATACGC-ATGCTGTGTGGAATATATAATATTGG-AGAGTGATAAT-TTGTC  987
             | |||||||||| || |||  |||| ||||| ||||| |||| || |||||||| || ||
Sbjct  699   TATGGAGCTATATGCTATG-AGTGTTGAATACATAATTTTGGAAG-GTGATAATCTT-TC  755

Query  988   TTCATTATATCCAAATGCT-GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGC-CAT  1045
              ||| | | |||||||||| | | ||||||||||||| ||||| |||||||| | | | |
Sbjct  756   ATCAATGTTTCCAAATGCTAGTC-TAAGTATTGGAGGGTTTCACTTAGATGCGC-CTCGT  813

Query  1046  CTATTTGCAT-TGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGC-TCAGAGATCTCA  1103
             |||||||| | |||| ||||| ||||| |||||||| ||||| |||| || |||| ||||
Sbjct  814   CTATTTGC-TCTGCTTACCACCCTCGCTGTTCTCCCAACCGTATGGCTTC-GAGACCTCA  871

Query  1104  GCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTT  1163
             ||||||| ||||| || || |||||||||||||||||||||||| | |||||||| || |
Sbjct  872   GCGTACTAAGTTACATATCAGCTGGAGGGGTGATTGCATCAGTGTTGGTGGTTTTGTGCT  931

Query  1164  TGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACACTAAA-C  1222
             |||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||||| |
Sbjct  932   TGTTTTGGGTTGGTTTGGTTGATGATGTTGGTATTCACAGCAAAGGAACTCCACTAAACC  991

Query  1223  TTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTT  1282
             | | ||||||| || ||  || |||||||||||||||| || ||||||||||||| ||||
Sbjct  992   TCG-CAACATTGCCGGTTTCTGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTT  1050

Query  1283  TTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACA  1342
             ||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||
Sbjct  1051  TTCCCAAATATATATACTTCTATGGCCAAACCATCTCAATTTCCTGCTGTTCTCTTGGCA  1110

Query  1343  TGTTTTGGTATTTGTACTCTGATGTATGCCGGC-GTCGCTGTTATGGGTTATA-CGATGT  1400
             | |||||| ||||| |||||||||||||| ||| || ||||||||||| |||| | ||||
Sbjct  1111  TCTTTTGGAATTTGCACTCTGATGTATGC-GGCTGTGGCTGTTATGGGATATAGC-ATGT  1168

Query  1401  TTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTA  1460
             |||||||||||||| | |||||||||||||| ||| |||||||||||||  ||||| |||
Sbjct  1169  TTGGAGAATCAACAGAATCACAGTTTACTCTTAACCTGCCTCAAGATTTGGTTGCATCTA  1228

Query  1461  AGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCAT-ATCT  1519
             |||||||| ||||||||||    |  || | |    | |  ||||||||||| || ||||
Sbjct  1229  AGATTGCTTTGTGGACTACAAAAGA-AAGC-A----C-A--TATGCTTTGAC-ATTATCT  1278

Query  1520  CCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTAC  1579
             || || |||||||||||||||||||| ||||||||||  |||   | ||||| ||  |||
Sbjct  1279  CCGGTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACCATGGGAAGTCACGTTTCTAC  1338

Query  1580  GCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTATTCC  1638
              | |||| ||||||||   | ||| | ||||||||||||||| |||||||| || |||||
Sbjct  1339  TCAATCGCCATTAGAAGTGC-ATTAGCCTTCTCTACTCTGCTCGTTGGTCTTGCGATTCC  1397

Query  1639  CTTCTT  1644
             ||||||
Sbjct  1398  CTTCTT  1403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77742190045


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5