BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39130.1 Length=2067 Score E Sequences producing significant alignments: (Bits) Value Ahg901838 jgi|Araly1|901838|Al_scaffold_0004_2488 2700 0.0 Ahg359293 jgi|Araly1|359293|fgenesh1_pg.C_scaffold_92000007 1496 0.0 Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558 795 0.0 > Ahg901838 jgi|Araly1|901838|Al_scaffold_0004_2488 Length=1650 Score = 2700 bits (1462), Expect = 0.0 Identities = 1594/1657 (96%), Gaps = 11/1657 (1%) Strand=Plus/Plus Query 200 ATGAATCACGTACCGTCTGATCAAAGCTTTTACATTGAGAGCGAGGACGAAGACGATAGG 259 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAATCACGTACCTTCTGATCAAAGCTTTTACATTGAGAGCGAAGACGAAGACGATAGG 60 Query 260 AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTCTGATGATGTTTATGAT 319 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 61 AAAGATTACGTAGAAGAAGATGGTGGAAGCCATTCTGATTCCTC---TGATGCTTATGAT 117 Query 320 GAAAACCAAGCTCACATTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG 379 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GAAAACCAAGCTCAGACTAAGCCTAGCTCATACACCACTGCTTGGCCTCAGAGTTACAGG 177 Query 380 CAGTCGATTGATCTTTATAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGGAATAAT 439 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 178 CAGTCGATTGATCTTTACAGTAGTGTACCGTCTCCCGGTATCGGTTTTCTTGGAAATAAT 237 Query 440 TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTGGT-TTGATAAGAAGACATACTCC 498 |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| Sbjct 238 TCGATGACGAGATTCGGAAGCTCTTTCTTGTCTTCTTCTCTT-ATAAGAAGACATACTCC 296 Query 499 GGAATCATTACCTACTGTTACAAAACCTTTGTTAGAAGA-ACAAGCAGATGAACAAGCAC 557 ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||| Sbjct 297 GGAATCATTACCTGCTGTTACAAAACCTTTGTTAGAA-ACACAAGCAGATGAACAGGCAC 355 Query 558 TACCAAAACATAGACTTAGCTCTCAGGGCTTACTCTCTCCTATTCCTTCGAGGAGGGGTT 617 |||||||||||||||||||||||| ||||| || ||||||||||||||||||||| || Sbjct 356 CACCAAAACATAGACTTAGCTCTCATGGCTTGCTTTCTCCTATTCCTTCGAGGAGGCATT 415 Query 618 CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCAATGTCTCGTAATA 677 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 416 CGATGCGAAAGGATGAGAAATCATCCATGGTGTCTCATGAGATTCCTATGTCTCGTAATA 475 Query 678 GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT 736 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 476 GCTCATACGGACAAGCTGTACTAAATGGATTGAACGTT-TTATGTGGGGTTGGAATACTT 534 Query 737 TCAACGCCTTATGCTGCCAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT 796 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 535 TCAACGCCTTATGCTGCAAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATAT 594 Query 797 GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTATTGCCTCGACAGTGAGTCTGAC 856 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 595 GGTCTTCTTTCTTTCTACACCGGAATCCTCCTTCGTTACTGCCTCGACAGTGAGTCTGAC 654 Query 857 CTCGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC 916 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 CTTGAAACCTATCCCGACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTC 714 Query 917 TCGATTGTACTCTACTTGGAGCTATACGCATGCTGTGTGGAATATATAATATTGGAGAGT 976 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 715 TCGATTGTACTCTACTTGGAGCTATACGCTTGCTGTGTGGAATATATAATATTGGAGAGT 774 Query 977 GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGATTTCAGTTAGAT 1036 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 775 GATAATTTGTCTTCATTATATCCAAATGCTGCCTTAAGTATTGGAGGGTTTCAGTTAGAT 834 Query 1037 GCACGCCATCTATTTGCATTGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGCTCAGA 1096 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 835 GCCCGCCATCTATTTGCATTGCTAACCACTCTCGCGGTTCTCCCCACCGTTTGGCTCAGA 894 Query 1097 GATCTCAGCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTT 1156 |||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 895 GATCTCAGTGTACTGAGTTATATCTCAGCTGGAGGGGTGATTGCATCGGTGCTAGTGGTT 954 Query 1157 TTATGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA 1216 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 TTGTGTTTGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACA 1014 Query 1217 CTAAACTTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACAT 1276 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1015 CTAAACTTGTCAACTTTACCTGTAGCTATAGGACTATATGGTTACTGCTACTCAGGACAT 1074 Query 1277 GCTGTTTTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC 1336 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 GCTGTTTTTCCCAACATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTC 1134 Query 1337 TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 TTGACATGTTTTGGTATTTGTACTCTGATGTATGCCGGCGTCGCTGTTATGGGTTATACG 1194 Query 1397 ATGTTTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCA 1456 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1195 ATGTTTGGAGAATCAACACAATCACAGTTTACTCTCAACTTGCCTCAAGATTTGGTTGCT 1254 Query 1457 ACTAAGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATA 1516 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 ACTAAGATTGCCGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCATT 1314 Query 1517 TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGG 1576 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1315 TCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATAAGGTCACATTGG 1374 Query 1577 TACGCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTAT 1635 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| || || Sbjct 1375 TACGCCATCGGCATTAGAACCGC-ATTGGTCTTCTCTACGCTGCTTGTTGGTCTTGCAAT 1433 Query 1636 TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT 1695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 TCCCTTCTTTGGTCTTGTCATGTCATTGATTGGATCGTTGTTGACTATGCTCGTCACTCT 1493 Query 1696 AATACTTCCTCCAGCTTGTTTCTTGAGCATTGTAAGGAGAAAAGTTACCCCGACCCAGAT 1755 ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1494 AATACTTCCTCCAGCGTGTTTCTTGAGCATCGTACGGAGAAAAGTTACCCCGACCCAGAT 1553 Query 1756 GATGTTGTGTGTCTTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC 1815 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 GATGTTGTGTGTATTAATCATCATAGTAGGAGCAATATCTTCAGTCATTGGCTCATATTC 1613 Query 1816 AGCTCTTTCCAAGATCGTTGAGAAATTGACCAACTGA 1852 |||||| |||||||||||||||||||||| || |||| Sbjct 1614 AGCTCTCTCCAAGATCGTTGAGAAATTGAGCAGCTGA 1650 > Ahg359293 jgi|Araly1|359293|fgenesh1_pg.C_scaffold_92000007 Length=909 Score = 1496 bits (810), Expect = 0.0 Identities = 875/907 (96%), Gaps = 2/907 (0%) Strand=Plus/Plus Query 947 TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 TGCTGTGTGGAATATATAATATTGGAGAGTGATAATTTGTCTTCATTATATCCAAATGCT 63 Query 1007 GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGCCATCTATTTGCATTGCTAACCACT 1066 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 64 GCCTTAAGTATTGGAGGGTTTCAGTTAGATGCCCGCCATCTATTTGCATTGCTAACCACT 123 Query 1067 CTCGCCGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGCGTACTTAGTTATATCTCTGCT 1126 ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 124 CTCGCGGTTCTCCCCACCGTTTGGCTCAGAGATCTCAGTGTACTGAGTTATATCTCAGCT 183 Query 1127 GGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTTTGTTTTGGATTGGTTTGGTAGAT 1186 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 184 GGAGGGGTGATTGCATCGGTGCTAGTGGTTTTGTGTTTGTTTTGGATTGGTTTGGTAGAT 243 Query 1187 GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACATTACCTGTGGCTATA 1246 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 244 GAAGTTGGAATTCACAGCAAAGGAACTACACTAAACTTGTCAACTTTACCTGTAGCTATA 303 Query 1247 GGACTCTATGGTTACTGCTACTCAGGACATGCTGTTTTCCCCAATATTTATACTTCTATG 1306 ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 304 GGACTATATGGTTACTGCTACTCAGGACATGCTGTTTTTCCCAACATTTATACTTCTATG 363 Query 1307 GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GCCAAACCATCTCAATACCCTGCTGTTCTCTTGACATGTTTTGGTATTTGTACTCTGATG 423 Query 1367 TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAGTCACAGTTT 1426 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 424 TATGCCGGCGTCGCTGTTATGGGTTATACGATGTTTGGAGAATCAACACAATCACAGTTT 483 Query 1427 ACTCTCAACTTGCCTCAAGATTTAATTGCAACTAAGATTGCTGTGTGGACTACGGTGGTC 1486 ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 484 ACTCTCAACTTGCCTCAAGATTTGGTTGCTACTAAGATTGCCGTGTGGACTACGGTGGTC 543 Query 1487 AATCCATTTACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTG 1546 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 544 AATCCATTTACCAAATATGCTTTGACCATTTCTCCAGTAGCAATGAGTCTTGAGGAGTTG 603 Query 1547 ATACCATCAAGGCATATCAGGTCACATTGGTACGCCATCGGCATTAGAACC-CTATTGGT 1605 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct 604 ATACCATCAAGGCATATAAGGTCACATTGGTACGCCATCGGCATTAGAACCGC-ATTGGT 662 Query 1606 CTTCTCTACTCTGCTTGTTGGTCTCGCTATTCCCTTCTTTGGTCTTGTCATGTCATTGAT 1665 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 663 CTTCTCTACGCTGCTTGTTGGTCTTGCAATTCCCTTCTTTGGTCTTGTCATGTCATTGAT 722 Query 1666 TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCTTGTTTCTTGAGCAT 1725 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 723 TGGATCGTTGTTGACTATGCTCGTCACTCTAATACTTCCTCCAGCGTGTTTCTTGAGCAT 782 Query 1726 TGTAAGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTCTTAATCATCATAGTAGG 1785 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 783 CGTACGGAGAAAAGTTACCCCGACCCAGATGATGTTGTGTGTATTAATCATCATAGTAGG 842 Query 1786 AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTTTCCAAGATCGTTGAGAAATTGAC 1845 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 843 AGCAATATCTTCAGTCATTGGCTCATATTCAGCTCTCTCCAAGATCGTTGAGAAATTGAG 902 Query 1846 CAACTGA 1852 || |||| Sbjct 903 CAGCTGA 909 > Ahg324014 jgi|Araly1|324014|fgenesh1_pm.C_scaffold_5001558 Length=1677 Score = 795 bits (430), Expect = 0.0 Identities = 835/1026 (81%), Gaps = 45/1026 (4%) Strand=Plus/Plus Query 637 ATCATCCATGGTGTCTCATGAGATTCCAATGTCTC-GTAATAGCTCATACGGACAAGCTG 695 ||||||||||||||||||||| || |||| || | | ||||||| | ||||| |||| Sbjct 405 ATCATCCATGGTGTCTCATGAAATGGCAATCTC-CAATGATAGCTCGTTTGGACAGGCTG 463 Query 696 TACTAAATGGATTGAACGTTCTT-TGTGGGGTTGGAATACTT-TCAACGCCTTATGCTGC 753 | || |||||| |||| ||| || ||||||||||||||| || ||||| || ||||||| Sbjct 464 TTCTTAATGGAGTGAATGTT-TTATGTGGGGTTGGAATA-TTGTCAACACCATATGCTGT 521 Query 754 CAAAGAAGGAGGATGGTTAGGACTTATGATACTATTTGTATATGGTCTTCTTTCTTTCTA 813 || |||||||||||||| |||||||| || || |||| || |||| |||||| ||| || Sbjct 522 GAAGGAAGGAGGATGGTTGGGACTTATCATTCTCTTTGCATTTGGTATTCTTTGTTTTTA 581 Query 814 CACCGGAATCCTCCTT-CGTTATTGCCTCGACAGTGAGTCTGACCTCGAAACCTATCCCG 872 |||||| | || || || || |||||||| || | | || || | |||||||| | Sbjct 582 CACCGGTTTGCT-TTTGCGGTACTGCCTCGATAGCCACCCCGATGTCCAGACCTATCCTG 640 Query 873 ACATTGGCCAAGCTGCGTTTGGTACTACTGGACGTATCTTTGTCTC-GATTGTACTCTAC 931 | |||||||| || || |||||| | || || || ||| | ||||| | | ||||||| Sbjct 641 ATATTGGCCATGCCGCTTTTGGTTCCACCGGCCGCATCCTGGTCTCTG-TAATACTCTA- 698 Query 932 T-TGGAGCTATACGC-ATGCTGTGTGGAATATATAATATTGG-AGAGTGATAAT-TTGTC 987 | |||||||||| || ||| |||| ||||| ||||| |||| || |||||||| || || Sbjct 699 TATGGAGCTATATGCTATG-AGTGTTGAATACATAATTTTGGAAG-GTGATAATCTT-TC 755 Query 988 TTCATTATATCCAAATGCT-GCCTTAAGTATTGGAGGATTTCAGTTAGATGCACGC-CAT 1045 ||| | | |||||||||| | | ||||||||||||| ||||| |||||||| | | | | Sbjct 756 ATCAATGTTTCCAAATGCTAGTC-TAAGTATTGGAGGGTTTCACTTAGATGCGC-CTCGT 813 Query 1046 CTATTTGCAT-TGCTAACCACTCTCGCCGTTCTCCCCACCGTTTGGC-TCAGAGATCTCA 1103 |||||||| | |||| ||||| ||||| |||||||| ||||| |||| || |||| |||| Sbjct 814 CTATTTGC-TCTGCTTACCACCCTCGCTGTTCTCCCAACCGTATGGCTTC-GAGACCTCA 871 Query 1104 GCGTACTTAGTTATATCTCTGCTGGAGGGGTGATTGCATCAGTGCTAGTGGTTTTATGTT 1163 ||||||| ||||| || || |||||||||||||||||||||||| | |||||||| || | Sbjct 872 GCGTACTAAGTTACATATCAGCTGGAGGGGTGATTGCATCAGTGTTGGTGGTTTTGTGCT 931 Query 1164 TGTTTTGGATTGGTTTGGTAGATGAAGTTGGAATTCACAGCAAAGGAACTACACTAAA-C 1222 |||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||||| | Sbjct 932 TGTTTTGGGTTGGTTTGGTTGATGATGTTGGTATTCACAGCAAAGGAACTCCACTAAACC 991 Query 1223 TTGTCAACATTACCTGTGGCTATAGGACTCTATGGTTACTGCTACTCAGGACATGCTGTT 1282 | | ||||||| || || || |||||||||||||||| || ||||||||||||| |||| Sbjct 992 TCG-CAACATTGCCGGTTTCTGTAGGACTCTATGGTTATTGTTACTCAGGACATGGTGTT 1050 Query 1283 TTCCCCAATATTTATACTTCTATGGCCAAACCATCTCAATACCCTGCTGTTCTCTTGACA 1342 ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1051 TTCCCAAATATATATACTTCTATGGCCAAACCATCTCAATTTCCTGCTGTTCTCTTGGCA 1110 Query 1343 TGTTTTGGTATTTGTACTCTGATGTATGCCGGC-GTCGCTGTTATGGGTTATA-CGATGT 1400 | |||||| ||||| |||||||||||||| ||| || ||||||||||| |||| | |||| Sbjct 1111 TCTTTTGGAATTTGCACTCTGATGTATGC-GGCTGTGGCTGTTATGGGATATAGC-ATGT 1168 Query 1401 TTGGAGAATCAACACAGTCACAGTTTACTCTCAACTTGCCTCAAGATTTAATTGCAACTA 1460 |||||||||||||| | |||||||||||||| ||| ||||||||||||| ||||| ||| Sbjct 1169 TTGGAGAATCAACAGAATCACAGTTTACTCTTAACCTGCCTCAAGATTTGGTTGCATCTA 1228 Query 1461 AGATTGCTGTGTGGACTACGGTGGTCAATCCATTTACCAAATATGCTTTGACCAT-ATCT 1519 |||||||| |||||||||| | || | | | | ||||||||||| || |||| Sbjct 1229 AGATTGCTTTGTGGACTACAAAAGA-AAGC-A----C-A--TATGCTTTGAC-ATTATCT 1278 Query 1520 CCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTAC 1579 || || |||||||||||||||||||| |||||||||| ||| | ||||| || ||| Sbjct 1279 CCGGTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACCATGGGAAGTCACGTTTCTAC 1338 Query 1580 GCCATCGGCATTAGAACC-CTATTGGTCTTCTCTACTCTGCTTGTTGGTCTCGCTATTCC 1638 | |||| |||||||| | ||| | ||||||||||||||| |||||||| || ||||| Sbjct 1339 TCAATCGCCATTAGAAGTGC-ATTAGCCTTCTCTACTCTGCTCGTTGGTCTTGCGATTCC 1397 Query 1639 CTTCTT 1644 |||||| Sbjct 1398 CTTCTT 1403 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77742190045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5