BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39140.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482933 jgi|Araly1|482933|fgenesh2_kg.4__1993__AT2G39140.1 2113 0.0
> Ahg482933 jgi|Araly1|482933|fgenesh2_kg.4__1993__AT2G39140.1
Length=1371
Score = 2113 bits (1144), Expect = 0.0
Identities = 1302/1376 (95%), Gaps = 20/1376 (1%)
Strand=Plus/Plus
Query 2 TCGGGAAAACCCAACACACCGTCTCTCTCTCACTCTCACTTCCCATCGGCGAAAATGGCG 61
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1 TCGGAAAAACCCAACACACCGTCTCTCTCTCACTCTCAC-TCCCAACGGCGAACATGGCG 59
Query 62 TCGGTGGCGGCATCATCGTCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATtc 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCGGTGGCGGCATCATCGCCGATATCATTCGCTGCATCATTCCTCAAAATCAAAGCATTC 119
Query 122 cctctctcccctcgcttcttccccatccgtacactccgttgctctg--t-ctcctcctcc 178
|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 120 CCTCTCTCTCCTCGCTTCTTCCCCATCCGTACACTCCGTTGCTCTGTCTCCTCCTCCTCC 179
Query 179 tcctctGAGCCCATTGAATTCGACATCTCCTTCGCTCCTCCCAAACCCAAACCCTCCTCC 238
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TCCTCTGAGCCCATCGAATTCGACATCTCCTTCGCTCCTCCGAAACCCAAACCCTCCTCC 239
Query 239 ACTCACGGCGGCGTCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCGTA-GTGATGA 297
|||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 240 ACTCGCGGCGGCGCCACCCCTCAACAACTCTTCATCCCTTGGATCGTCCG-AGGTGATGA 298
Query 298 CGGCACTCTCAAACTCCAATCTCAACCTCCTGCTCGTTTAATCCACAACCTCGCCATCGA 357
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 299 CGGCACTCTCAAACTCCAATCTCAACCTCCCGCTCGTTTAATCCACAATCTCGCCATTGA 358
Query 358 TGCCACTACTCAAAACCCTAAGAAGAAAGATAAATCTAAGAAGAAACAACCTCAAGCTA- 416
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TGCCACTACTCAAAACCCTAAGAAGAAAGATAAACCTAAGAAGAAACAACCTCAAGCTAC 418
Query 417 --CCTCCTCTTCCTCCGCCACCACCACCGCCTCATCTCCAGCTTCACACTCAGAGGTAAA 474
||||||| || |||| || || | ||||| ||||||||||||||||||||||||||
Sbjct 419 TTCCTCCTCCGCCACCGCTTCCTCCTCAGCCTCCTCTCCAGCTTCACACTCAGAGGTAAA 478
Query 475 GCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTTAAAGAACAACCTCA 534
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 479 GCCAAAGCTATCCAAAGCGGCGCGTAGGTTTTACAATGAGAATTTCAAAGAACCTCCTCA 538
Query 535 ACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACGTTTAAGCAAAGTTCTCGCTGCTGCTGGAGTGGCATCAAGAAGAACCTCTGAAGAACT 598
Query 595 TATTTTTGATGGCAAGGTTACTGTTAATGGTATTCTCTGCAACACTCCACAGACTCGAGT 654
||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 TATATTTGATGGAAAGGTTACTGTTAATGGTATTCTCTGCACCACTCCACAGACTCGAGT 658
Query 655 TGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCTAAGAAACTTCCTCC 714
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 TGATCCATCAAGAGACATTATTTATGTTAATGGAAATCGTATTCCCAAAAAACTTCCTCC 718
Query 715 AAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAAGGTTTATTTTGCTCTGAACAAGCCTAAAGGATATATTTGTTCTTCCGGAGAGAAAGA 778
Query 775 GATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTGGGATAAAAGGAATCC 834
|||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 779 TATCAAATCTGTTATTAGTTTGTTTGACGAGTACATGGCCTCTTGGGATAAAAGGAATCC 838
Query 835 GGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATT 894
||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 839 GGGGATTCCCAAACCTCGTCTTTTTACTGTTGGTCGTCTTGACGTTGCCACAACAGGATT 898
Query 895 GATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATAGTTGTTACAAATGATGGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTT 958
Query 955 ACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTAT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACCGAAAGAATATATTACCACGGTTGTCGGTGATATACACAAACGACACTTAATGGCTAT 1018
Query 1015 CAGTGAAGGCACAATGGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCC 1074
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGCGAAGGCACAGTTGTGGAAGGAGTCCACTGTGTCCCAGATTCAGTTGAGTTGATGCC 1078
Query 1075 AAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGGTTCACGAAGGAAGAAATCA 1134
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1079 AAAGCAGCATGATATACCAAGAGCAAGGCTACGTATTGTGGTTCACGAAGGGAGAAACCA 1138
Query 1135 TGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTGTCCG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1139 TGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAGGTTCATTCATTGAAGCGTATTCG 1198
Query 1195 TATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAATTGAAGCA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 TATAGGTGGATTCAGACTTCCTTCAGATCTTGGGCTAGGGAAGCATGTGGAGTTGAAGCA 1258
Query 1255 GAGCGAGCTAAAGGCATTGGGTTGGAAGAATTGAAGATGT-CCAATTCATCAAACAATTA 1313
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1259 GAGCGAGCTAAAGGCAATGGGTTGGAAGAATTGAAGATGTGCCATTT-ATCAAACAATTA 1317
Query 1314 AAAACCTCTGTTACCTTTAGTT-AAAA------CAGAATATAATTGTTTAGATTAT 1362
||| | ||||||||| |||| |||| |||||||||||||||||| ||||
Sbjct 1318 AAA-C-TCTGTTACCATTAGAAGAAAAAAAAAACAGAATATAATTGTTTAGTTTAT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5