BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39170.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482935 jgi|Araly1|482935|fgenesh2_kg.4__1995__AT2G39170.1 1450 0.0
> Ahg482935 jgi|Araly1|482935|fgenesh2_kg.4__1995__AT2G39170.1
Length=951
Score = 1450 bits (785), Expect = 0.0
Identities = 901/955 (94%), Gaps = 16/955 (2%)
Strand=Plus/Plus
Query 12 tttttctttttGGGAACCCGTGATCAAATGATAGGAGGAACAAATCAGGAGAGACACAAT 71
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTTC-TTTTGGGAACCCGTGATCAAATGATAGGAGGAACAAATCAGGAGAGACACAAT 60
Query 72 TCTTTATTGACAGAGAAATTGATAATCGAAGAACCCTATTACCACCGATTCTCCTCTTTT 131
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TCTTTATTGACAGAGAAATTGATAATCGAAGAACCCAATTACCACCGATTCTCCTCTTTT 120
Query 132 CTCTCTGTTTCGTCGTCATCTAGGGTTTCCTAATGCATGAGTTCTCTACTGTTGATGGTT 191
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCTGCTTCGTCGTCATCTAGGGTTTCCTAATGCATGAGTTCTCTACTGTTGATGGTT 180
Query 192 TTGCGGAGATAAACGAGAGCTTAGCGGAGATGATAAAGTACATTGCAAATGAACCCTCAG 251
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 181 TTGCGGAGATAAACGAGAGCTTAGCCGAGATGATAAAATACATTGCAAATGAACCCTCAG 240
Query 252 TGGGGCTTTACTACATTCAACAGCACATCCGAAACGCAGCACCGAATGTTATTAATCTCA 311
|||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 TGGGGCTTTACTACATCCAACAGCATGTCCGAAACGCAGCACCGAATGTTCTTAATCTCA 300
Query 312 ACAACAACGTTTTGGAGAAGTCCCGTGAAACAGGCTTGCATACCGAAGACTTGGAAGATT 371
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 301 ACAACAACGTTTTGGAGAAGTCACGTGAAACAGGCTTGCATACCGAAGACTTGGATGATT 360
Query 372 CTATAGCCATGGTGAAATCTATGAAAGACTGTGGTTCACCTATTGCTGATGAGATGATAG 431
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 CTATAGCCATGGTGAAATCTATGAAAGAGTGTGGTTCACCTATTGCTGATGAGATGATAG 420
Query 432 GAGACATTAAGAACTCTTTAGCGATAATGTCTTCGAAACAACCGAGGAGAGGGGTCATCC 491
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 GAGACATCAAGAACTCTTTAGCGATAATGTCTTCGAAACAACCGAGAAGAGGGGTCATCC 480
Query 492 TCAACTCCACAAGTCCTTGGAGCAGATCCAGCAGTATAACAACAAGAACGCGTGGTTCTG 551
|||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TCAACTCCACAAACCCATGGAGCAGATCCAGCAGTATAACAACAACAACGCGTGGTTCTG 540
Query 552 ATAACAGCCAGGATAATAGTGAAAGCAGCAACTATTTCACATCAGTCTTCATGACGGCTA 611
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 ATTACAGCCAGGATAATAGTGAAAGCAGCAACTATTTCACATCAGTCTTCAAGACGGCTA 600
Query 612 AGGAGAAGGCAAGCAACATCAAATGGCCACAACTTGATTTCAAAGAACAAAAGTCAGAGG 671
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 AGGAGAAGGCAAGCAACATCAAATGGCCACAACTTGATTTCAAAGAACAGAAGTCAGAGG 660
Query 672 CTGACCCCAATGTGCAAAGCAATGAGTTAAAAGAAGAAGAAGAAGAGGACTCAGGGAAAG 731
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 661 TTGACCCCAATGTGCAAAGCAATGAGTTAAAAGAAGAAGAAGAAGAAGTCTCAGTGAAAG 720
Query 732 GTGAACATATTGTGGAGACAACAAAGTTTGAGGAGTTCAAGGCAGGTAAAGAAGCGAGTC 791
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGAACATATTGTGGAGACGACAAAGTTTGAGGAGTTCAAGGCAGGTAAAGAAGCGAGTC 780
Query 792 TCAAGGCATGGCTTGGAGATATGGATGGGAATGTGGATGTTGGTGGTCGTGTTGCCGAGA 851
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TCAAGGCATGGCTTGGAGATATGGATGGGAATGTGGATGTTGGTGGACGTGTTGCCGAGA 840
Query 852 GAATTTAGATGTTTTTT-------CATTAATGTCGCTGTGGTTACGGGAGACTGCTTATT 904
| |||||| | |||||| ||||||||||| ||| || || ||||||||||
Sbjct 841 GGATTTAGTTTTTTTTTTTTTTTTCATTAATGTCGTTGTTGT---GGTT-ACTGCTTATT 896
Query 905 TATGTAAATCATTCACTTA---CACAGAGA-AAAAAGAGTTAAAATTTTGACTTT 955
||||||||| |||||||| | || ||| |||||||||||||||||||| |||
Sbjct 897 TATGTAAATTATTCACTTTGGTCTCATAGAGAAAAAGAGTTAAAATTTTGAGTTT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5