BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39180.1
Length=2515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482936 jgi|Araly1|482936|fgenesh2_kg.4__1996__AT2G39180.1 3893 0.0
> Ahg482936 jgi|Araly1|482936|fgenesh2_kg.4__1996__AT2G39180.1
Length=2441
Score = 3893 bits (2108), Expect = 0.0
Identities = 2336/2447 (95%), Gaps = 11/2447 (0%)
Strand=Plus/Plus
Query 58 ATGCAACCCAATTCTCACATCTTCGTCATCATCACCATTTCATCACTCATCATTACAGTT 117
|||||||||||||| | || |||| || || ||||||||||||||||||||||||| |||
Sbjct 1 ATGCAACCCAATTC-C-CA-CTTCTTCTTCTTCACCATTTCATCACTCATCATTACTGTT 57
Query 118 TCTGCGTATGGCTCAACAGGCACAATCGCAGCAGCTTTCGGCGAAAACGGATTCTTCTGC 177
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 TCTGGGTATGGCTCAACAGGCACAATCGCAGCAGCTTTTGGCGAAAACGGATTCTTCTGC 117
Query 178 GCCATTGACGCAAGTGGGAAGCAAGAAGTCATCTGTTGGGATAGAGGAAACACTAACCGA 237
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 GCCATTGACGCAAGTGGGAAGCAAGAAGCCATCTGTTGGGATAGAGGAAACACTAACCGA 177
Query 238 TCATTAAACCGACC-CCCAGGTGAAATCTCCGGTTATTCTCCTCCAATGACTTCTCTTTC 296
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 TCTTTAAACCGACCACCC-GGTGAAATCTCCGGTTATTCTCCTCCAATGACTTCACTTTC 236
Query 297 CGGTGGTGAAGGTTTTCTCTGCGCCATTACGTCGAACACTTCGCGTGCGTTTTGTTGGAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGTGGTGAAGGTTTTCTCTGCGCCATTACGTCGAACACTTCGCGTGCGTTTTGTTGGAA 296
Query 357 CCTTGAAGATCCTTCTGAGAATCTCGTTCCTCGAGCTTTTCAGTATAATTCTTACTTACA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTTGAAGATCCTTCTGAGAATCTCGTTCCTCGAGCTTTTCAGTATAATTCTTACTTACA 356
Query 417 GATTGCTTCTGGTAACAATCATGTTTGTGCTATTAGTGGATTGTATTACTCAGGTCCTGA 476
|||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 357 GATTGCTTCTGGTAGCAATCATGTTTGTGCTATAAGTGGATTGTACTATTCAGGTCCTGA 416
Query 477 TTATGGTCCTGTTCATTGTTGGGAGTATAGTGATAACACTAATTTCACTTCTGGTCTTCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTATGGTCCTGTTCATTGTTGGGAGTATAGTGATAACACTAATTTCACTTCTGGTCTTCT 476
Query 537 TTGGAATTCTTCTTTTCATAATCCTTATATAGATAGTCTCATGTTTCGTAAGATTGTTTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGGAATTCTTCTTTTCATAATCCTTATATAGATAGTCTCATGTTTCGTAAGATTGTTTC 536
Query 597 TGGAGATGGGTTTTCTTGTGGTGTTACTAAAGATGGAGACTTGGTTTGTTGGGGACCAAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGAGATGGGTTTTCTTGTGGTGTTACTAAAGATGGAGACTTGGTTTGTTGGGGACCAAA 596
Query 657 ATCAAACCTTTTGAATTTCTCCAATAATGAAGAATTCGAGGTTTTAGCTTCTGGGAGGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATCAAACCTTTTGAATTTCTCCAATAATGAAGAATTCGAGGTTTTAGCTTCTGGGAGGAA 656
Query 717 CTCTGTTTGTGGTGTCTCTAAAGATTCAGGTCAACTTCATTGCTTTGGAGATGAAACAGA 776
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 CTCTGTTTGTGGTGTCTCTAAAGATTCAGGTCAACTTCAATGCTTTGGAGATGAAACAGA 716
Query 777 GTTTGGT-TCGTTACCAAACCGGCCTCGGTTTATTGCTCTTTCAGCTGGTGCTAATCATT 835
||||||| | |||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 717 GTTTGGTGT-GTTACCGAACCGGCCTCGGTTTATCGCGCTTTCAGCTGGTGCTAATCATT 775
Query 836 ATTGTGGTATACGTGAGGATGATCATGGAGTTGAGTGTTGGGGAAGGAACTTGAATTCTT 895
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 776 ATTGTGGTATCCGTGAGGATGATCATGGGGTTGAGTGTTGGGGAAGAAACTTGAATTCTT 835
Query 896 CTTCATCATCTTCAGCTCCTAATACTTCAGGGTTTGTGGCGATTTCGTCTTCGGATTCAA 955
| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 836 CGTCGTCAGCTTCAGCTCCTAATACTTCCGGGTTTGTGGCGATTTCGTCTTCGGATTCTA 895
Query 956 CAACTTGTGGAGTTAGAGAGCTTGATTTAGTTCTTGATTGTTGGAGAGTTCATGATTCTT 1015
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 896 CAACTTGTGGAGTTAGAGAGCTTGATTTGGTTCTTGATTGTTGGAGAGTTCATGATTCTT 955
Query 1016 CGAAAGCGGATTATAGTCCTCCTTTGGAGTTATGTAGCCCCGGGATGTGTTCGCCTCGCG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CGAAAGCGGATTATAGTCCTCCTTTGGAGTTATGTAGCCCCGGGATGTGTTCGCCTCGCG 1015
Query 1076 GTAATTGTGGTGATGGTTGGTTTGCTTTCAATGCAAGTATCTTGAAAGAATCTGAGCTTA 1135
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 GTAATTGTGGTGATGGCTGGTTTGCTTTCAATGCAAGTATCTTGAAAGAATCTGAGCTCA 1075
Query 1136 CTAGCTTGTGCTCGTTTCATAACCTCAACATTTGTTTACGTTGTGGAATCAGTTGCTTGG 1195
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1076 CGAGCTTGTGCTCGTTTCATAACCTCAACATTTGCTTACGCTGTGGAATCAGTTGCTTGG 1135
Query 1196 AAGGGTATTTCCCTTCCAGCACTTGTAATCCAAACGCGGACCGGGTCTGTACTCCTTGTT 1255
|||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1136 AAGGCTATTTTCCTTCCAGTACTTGTAATCCAAATGCGGACCGGGTCTGTACTCCTTGTT 1195
Query 1256 CGCTATGTCAGAATAGTTCTTGTTACGGTATCTGTAAGATTCGGGCTACGAAATCGAAGG 1315
| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 1196 CACTATGTCAGAACAGTTCTTGTTACGGTATCTGTAAGATTCGGGTTGCGAAATCGAAAG 1255
Query 1316 AGCATGAGCAGAAAGAGCAGAGAGAGGTACGGAGATTGGTGATCATCATAGGGTGCTCTG 1375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGCACGAGCAGAAAGAGCAGAGAGAGGTACGGAGATTGGTGATCATCATAGGGTGCTCTG 1315
Query 1376 TTTTAGGGTTCTTGGTGATGTTGATTGGTTTGTCTTTCATTCCAAAGATGACAAAAGGTA 1435
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1316 TTTTAGGGTTCTTGGTGATGTTGATCGGTTTGTCTTTCATTCCAAAGATGACAAAAGATA 1375
Query 1436 GTAAACGAGATGATGAAGAGAGGAGTAAGATGACTTGTTGCTTCTGTTTCGATAAGAATT 1495
||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1376 GTAAAAGAGATGATGAAGAGAGAAGCAAAATGACTTGTTGCTTCTGTTTCGATAAGAATT 1435
Query 1496 CTGTAGAAGCTGATCCTGATCCTGTCCCTCATCAGTCGGTTCTTCTACCAACCGCTGTAT 1555
|||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1436 CTGTCGAAGCTGATCCTGATCCCGTCCCTCA---GTCAGTTCTTCTACCAACCGCTGTAT 1492
Query 1556 CTCTCGGGGAAACCAAGATCTTCCGTCTATCAGAACTTAAAGACGCGACTCACGGGTTCA 1615
|||| ||||| ||||| ||||||||||| || || || ||||| ||||||||||||||||
Sbjct 1493 CTCTGGGGGAGACCAAAATCTTCCGTCTTTCGGAGCTCAAAGATGCGACTCACGGGTTCA 1552
Query 1616 AAGAATTCAACGAGCTCGGGAGAGGTAGCTTCGGGTTTGTCTATAAAGCTGTTTTATCTG 1675
||||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||||
Sbjct 1553 AAGAATTCAACGAGCTCGGAAGGGGTAGCTTCGGGTTTGTTTACAAAGCTGTTTTGTCTG 1612
Query 1676 ATGGGATACATGTTGCGGTCAAAAGAGCGAATGCTGCAACGATCATTCACTCTAATAACC 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ATGGGATACATGTTGCGGTCAAAAGAGCGAATGCTGCAACGATCATTCACTCTAATAACC 1672
Query 1736 GAGGTTTCGAGTCCGAGCTAGAGATTCTTTGCAAAATCAGACACAACAATATTGTGAATT 1795
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAGGTTTCGAGTCGGAGCTAGAGATTCTTTGCAAAATCAGACACAACAATATTGTGAATT 1732
Query 1796 TGTTAGGATACTGCTCAGAGATGGGGGAAAGGCTTTTGGTTTATGAGTACATGCCGCACG 1855
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1733 TGTTAGGATATTGCTCGGAGATGGGGGAACGGCTTTTGGTTTATGAGTACATGCCGCACG 1792
Query 1856 GTACGCTTCATGATCATCTCCATGGAGATCTTTCACAACTGGACTGGAGCATGAGACTGA 1915
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1793 GTACGCTCCATGATCATCTCCATGGAGATCTTTCACAACTGGATTGGAGCATGAGATTGA 1852
Query 1916 AGATCATGTTGCAGGCTGCAAGAGGACTTGATTACTTACACAACGAAGTAGATCCTCCGA 1975
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1853 AGATCATGTTGCAGGCTGCAAGAGGACTTGATTACTTACACAACGAAGTAGATCCTCCAA 1912
Query 1976 TAATTCACAGAGATGTGAAAACGTCCAACATCTTGTTAGACGGTGAAATGTGCGCAAGAA 2035
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 TAATTCATAGAGATGTGAAAACGTCCAACATCTTGTTAGACGGTGAAATGTGCGCAAGAA 1972
Query 2036 TTGCGGATTTCGGATTGGTAAGCTCGAATGAAAGGGATTCAAGCAATAGTGATAGAGAAG 2095
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 TAGCGGATTTCGGATTGGTAAGCTCGAATGAAAGGGATTCAAGCAATAGTGATAGAGAAG 2032
Query 2096 GTGATGTGTATGACTTTGGTATTGTTCTACTTGAGATACTAAGCGGGCGAAAAGCTATCG 2155
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2033 GTGATGTGTATGACTTTGGTATTGTGCTTCTTGAGATACTAAGCGGGCGAAAAGCTATCG 2092
Query 2156 ATAGAGAGTCTGATCCTGCGGGGATTGCGGAATGGGCGGTTCCTTTGATCAGGAAAGGAA 2215
||||||| ||||||||| | || |||||||||||||||||||| ||||||||||||||||
Sbjct 2093 ATAGAGAATCTGATCCTCCCGGAATTGCGGAATGGGCGGTTCCATTGATCAGGAAAGGAA 2152
Query 2216 AAGCAGCGGCGATAATCGATAGGAACATTTGTTTGCCAAGAAATGTAGAGCCTTTGCTTA 2275
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2153 AAGCAGCGGCGATTATCGATAGGAACATTGGTTTGCCAAGAAATGTAGAGCCTTTGCTTA 2212
Query 2276 AATTGGCTGAGTTAGCTGAGCTTGCTGTGAGGGAAAATTCGAATGAACGACCAAATATCA 2335
|||||||||| |||||||||||||||||||||||| | | || |||||||| |||||||
Sbjct 2213 AATTGGCTGAATTAGCTGAGCTTGCTGTGAGGGAACACCCCAACGAACGACCCAATATCA 2272
Query 2336 GAAATATTCTGTGTTTTCTTGATCTCATCGTCAAGTCTGGCCTCACTTTTTAAGTTGCTG 2395
|||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2273 AAAATATTCTGAGTTTTCTTGATCTCATCGTCAAGTCTGGACTCACCTTTTA-GTTGCTG 2331
Query 2396 AAGCCTCTCAAAATGTGAAATATATTCAGCATTGTTTTTGTTTCTCCTTACAAATTGTAT 2455
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2332 AAGCCTCTCAAAATGTGAAATATATTCAGCATTGTTTTTATTTCTCCTTATAAATTGTAT 2391
Query 2456 GATAAATTGATTGTCAAAGTAATAAAAACACGGATTTGTTTTTCAAA 2502
|||||||||||| ||||||||||||| ||| ||||||||| |||||
Sbjct 2392 GATAAATTGATTATCAAAGTAATAAACCCACAGATTTGTTTGTCAAA 2438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94806619805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5