BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39200.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934673 jgi|Araly1|934673|scaffold_402661.1 3003 0.0
Ahg887343 jgi|Araly1|887343|Al_scaffold_0100_2 937 0.0
> Ahg934673 jgi|Araly1|934673|scaffold_402661.1
Length=1771
Score = 3003 bits (1626), Expect = 0.0
Identities = 1720/1766 (97%), Gaps = 3/1766 (0%)
Strand=Plus/Plus
Query 2 TGAGCAGTGAAATTAATGGCAATAAAAGAGCGATCACTAGAGGAAACACCAACATGGGCT 61
|||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 6 TGAGCAGTGAAACTAATGGCAATAAAAGAGCGATCGTTGGAGGAGACACCAACATGGGCT 65
Query 62 GTTGCTGTAGTTTGCTTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCAC 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTTGCTGTTGTTTGCTTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCAC 125
Query 122 TTTATTGGTCACTGGTTTAAGAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAG 181
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 TTTGTTGGTCACTGGTTTAAAAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAG 185
Query 182 GTTAAAGCAGAACTGATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACA 241
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GTTAAAGCAGAGTTGATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACA 245
Query 242 CCAGTCTCCGAGATTTGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAAC 301
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CCAGTCTCCCAGATTTGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAAC 305
Query 302 CATCAAGAAATCGCCAAATATGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAA 361
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 306 CATCAAGAAATTGCTAAATACGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAA 365
Query 362 GATTTTGACTCCAACGACTTTTACAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGAC 421
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 366 GATTTTGACTCCAAAGACTTTTATAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGAC 425
Query 422 AAATGCGCAGAAAAGGGGAAAGTAGCATTAGTATCTGCCTATGGTATCCACCAGCTGCAT 481
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 426 AAATGTGCAGAAAAGGGGAAAGTAGCATTAGTATCTGCTTATGGTATCCACCAGCTGCAT 485
Query 482 ATATTCATCTTTGTGCTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ATATTCATCTTTGTGCTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTA 545
Query 542 GGAAAGACCAAGATGAAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GGAAAGACCAAGATGAAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTAC 605
Query 602 CAATATGCCAATGATCCAGAGAGGTTCAGATTTGCAAGAGATACATCGTTCGGACGTAGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CAATATGCCAATGATCCAGAGAGGTTCAGATTTGCAAGAGATACATCGTTCGGACGTAGA 665
Query 662 CATCTGAATATATGGAGCAAGTCTACCTTTACCCTCTGGATTACATGTTTCTTCAGACAG 721
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 666 CATTTGAATATATGGAGCAAGTCTACATTTACCCTCTGGATTACATGTTTCTTCAGACAG 725
Query 722 TTCTTTGGATCAGTGACAAAAGTAGATTATCTTACACTAAGACATGGCTTTATTATGGCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTCTTTGGATCAGTGACAAAAGTAGATTATCTTACACTAAGACATGGCTTTATTATGGCA 785
Query 782 CATTTGCCAGCAGGAAGTGCCGCTCGTTTCGATTTCCAAAAATACATTGAAAGATCTTTG 841
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 786 CATTTGCCAGCAGGAAGTGCAGCTCGTTTCGATTTTCAAAAATACATTGAAAGATCTTTG 845
Query 842 GAACAAGATTTCACGGTGGTTGTCGGTATAAGCCCACTGATATGGTGCATTGCTGTCTTA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GAACAAGATTTCACGGTGGTTGTCGGTATAAGCCCACTGATATGGTGCATTGCTGTCTTA 905
Query 902 TTCATATTGACCAATACACATGGATGGGACTCATATCTTTGGCTGCCCTTCCTTCCCTTG 961
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 906 TTCATACTGACCAATACACATGGATGGGACTCATATCTTTGGCTGCCCTTCATTCCCTTG 965
Query 962 ATTGTGATATTGATAGTAGGAGCAAAACTTCAAATGATAATATCGAAATTAGGATTAAGG 1021
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 966 ATTGTAATATTGATAGTAGGAGCAAAACTTCAAATGATAATATCGAAATTGGGATTAAGA 1025
Query 1022 ATTCAAGAAAAAGGAGATGTGGTTAAAGGAGCTCCTGTGGTTGAACCGGGCGATGATCTC 1081
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1026 ATTCAAGAAAAAGGAGATGTGGTTAAAGGAGCTCCTGTTGTTGAACCGGGTGATGATCTC 1085
Query 1082 TTTTGGTTTGGTCGTCCTCGTTTCATTCTCTTCCTCATTCACTTGGTTCTTTTCACGAAT 1141
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1086 TTTTGGTTTGGTCGTCCTCGTTTTATTCTCTTCCTCATTCACTTGGTTCTTTTCACGAAT 1145
Query 1142 GCATTTCAACTGGCTTTCTTCGTTTGGAGCACTTACGAATTCACACTCAAAAACTGCTTC 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCATTTCAACTGGCTTTCTTCGTTTGGAGCACTTACGAATTCACACTCAAAAACTGCTTC 1205
Query 1202 CACCACAAAACAGAAGACATTGCAATTAGGATCACCATGGGGGTATTAATACAAGTTCTA 1261
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CACCACAAAACAGAAGATATCGCAATTAGGATCACCATGGGGGTATTAATACAAGTTCTA 1265
Query 1262 TGCAGCTACATCACTCTACCTCTCTATGCTCTTGTTACTCAGATGGGAACATCAATGAGG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TGCAGCTACATCACTCTACCTCTCTATGCTCTTGTTACTCAGATGGGAACATCAATGAGG 1325
Query 1322 CCGACAATATTCAACGACAGGGTAGCCAATGCATTGAAGAAATGGCACCACACAGCCAAG 1381
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1326 CCGACCATATTCAACGACAGGGTAGCCAATGCATTAAAGAAATGGCACCACACAGCCAAG 1385
Query 1382 AAACAGACGAAACATGGACACTCAGGATCTAACACACCTCACTCGAGCCGTCCTACTACG 1441
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1386 AAACAGACGAAACATGGACACTCGGGATCTAACACGCCTCACTCGAGCCGCCCTACTACG 1445
Query 1442 CCAACACATGGCATGTCACCGGTGCATCTCCTCCACAACTACAATAACCGCAGCCTCGAC 1501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CCAAAACATGGCATGTCACCGGTGCATCTCCTCCACAACTACAATAACCGCAGCCTCGAC 1505
Query 1502 CAACAAACCAGCTTCACTGCTTCTCCTTCTCCTCCTAGATTCTCTGATTATAGCGGCCAA 1561
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CAACAAACCAGCTTCACTGCCTCTCCTTCTCCTCCTAGATTCTCTGATTATAGCGGCCAA 1565
Query 1562 GGCCATGGCCATCAGCATTTCTTCGACCCTGAATCTCAGAATCACTCTTACCAACGTGAG 1621
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1566 GGCCATGGCCATCAGCATTTCTTTGACCCTGAATCTCAGAATCACTCTTACCAGCGTGAG 1625
Query 1622 ATCACAGATTCTGAATTCAGCAATAGTCATCATCCCCAAGTTGACATGGCAAGTCCTGTT 1681
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 ATAACAGATTCTGAATTCAGCAATAGTCATCATCCCCAAGTTGACATGGCAAGTCCTGTT 1685
Query 1682 AGAGAAGAGAAGGAGATTGTTGAGCATGTCAAGGTTGATTTGTCTGAGTTTACGTTCAAG 1741
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AGAGAAGAGAAGGAGATTATTGAGCATGTCAAGGTTGATTTGTCTGAGTTTACGTTCAAG 1745
Query 1742 AAGTGATAGGACT---ATACTTTTTA 1764
||||||||||||| ||||||||||
Sbjct 1746 AAGTGATAGGACTTTTATACTTTTTA 1771
> Ahg887343 jgi|Araly1|887343|Al_scaffold_0100_2
Length=585
Score = 937 bits (507), Expect = 0.0
Identities = 569/597 (95%), Gaps = 12/597 (2%)
Strand=Plus/Plus
Query 17 ATGGCAATAAAAGAGCGATCACTAGAGGAAACACCAACATGGGCTGTTGCTGTAGTTTGC 76
|||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCAATAAAAGAGCGATCGTTGGAGGAGACACCAACATGGGCTGTTGCTGTTGTTTGC 60
Query 77 TTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCACTTTATTGGTCACTGG 136
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCACTTTGTTGGTCACTGG 120
Query 137 TTTAAGAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAGGTTAAAGCAGAACTG 196
||||| |||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 121 TTTAAAAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAA-G-T----------TG 168
Query 197 ATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACACCAGTCTCCGAGATT 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 169 ATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACACCAGTCTCCCAGATT 228
Query 257 TGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAACCATCAAGAAATCGCC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 229 TGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAACCATCAAGAAATTGCT 288
Query 317 AAATATGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAAGATTTTGACTCCAAC 376
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 289 AAATACGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAAGATATTGACTCCAAA 348
Query 377 GACTTTTACAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGACAAATGCGCAGAAAAG 436
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 349 GACTTTTATAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGACAAATGTGCAGAAAAG 408
Query 437 GGGAAAGTAGCATTAGTATCTGCCTATGGTATCCACCAGCTGCATATATTCATCTTTGTG 496
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 GGGAAAGTAGCATTAGTATCTGCTTATGGTATCCACCAGCTGCATATATTCATCTTTGTG 468
Query 497 CTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTAGGAAAGACCAAGATG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTAGGAAAGACCAAGATG 528
Query 557 AAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTACCAATATGCCAAT 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTACCAATATGCCAAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5