BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39220.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934676 jgi|Araly1|934676|scaffold_402664.1 2427 0.0
Ahg485912 jgi|Araly1|485912|fgenesh2_kg.5__1904__AT3G54950.1 885 0.0
> Ahg934676 jgi|Araly1|934676|scaffold_402664.1
Length=1531
Score = 2427 bits (1314), Expect = 0.0
Identities = 1449/1516 (96%), Gaps = 2/1516 (0%)
Strand=Plus/Plus
Query 366 TACGATGCAAAGAGTACACAACAAACCGATTGATTCTATCGGAGGTTTTAAGCATTTGGT 425
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |
Sbjct 17 TACGATGCAAAGAGTACACAGCAAGCCGATTGATTCTATCGGAGCTTTTAAGCATTTAAT 76
Query 426 AAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGCGACGGATATGCAAGAACCGAGCAT 485
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 77 CAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGTGGCGGATATGCAAGAACCGAGCAT 136
Query 486 CGAGACTGATAAGCTTAGCTACGAGATTTTCTCTATTCTCGAAAGCAAGTTTCTTTTCGG 545
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 137 AGAGACGGATAAGCTTAGCTACGAGATTTTCTCGATTCTTGAAAGCAAGTTTCTTTTCGG 196
Query 546 GTATGATGATGACCTGAAGCTTATGGAATCAAGAAGCAGAGACCCGAGTCCAGAGCAAGA 605
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 197 GTATGATGATGACCCGAAGCTTATGGAATCAAGGAGCAGAGACCCGAGTCCGGAGCAAGA 256
Query 606 AACGGCATCACCGGCGATGGTGGAAGCTTTAAACGGCGTTGTTCCGGGTACAGTTAAGAA 665
||| |||||||||||||||||||| | ||| |||||||| ||||||||| || |||||||
Sbjct 257 AACAGCATCACCGGCGATGGTGGATGGTTTGAACGGCGTCGTTCCGGGTTCAATTAAGAA 316
Query 666 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 376
Query 726 TGGAAAAGCTTTGGCTTATCTGGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 785
|||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 377 TGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 436
Query 786 TCGAATCGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGTGGGATTTTCACGGC 845
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 CCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGAGGGATTTTCACGGC 496
Query 846 GATGCTTTTTGCGTCGAGCGATGGTAACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 905
||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 497 GATGCTTTTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 556
Query 906 GTTTTTAGCTATGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACAG 965
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 557 GTTTTTAGCTAAGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACCG 616
Query 966 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCAGGTTCGAAGCTTGAGAAAGCGAT 1025
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 617 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCGGGTTCGAAGCTTGAGAAAGCGAT 676
Query 1026 GAAGGAGTC-TTTCGAAGAGCTTACGCTTAAGGATACGCTTAAACCGGTTTTGATTCCTT 1084
||||||||| ||| || |||||||||||||| || ||||| |||||||||||||||||||
Sbjct 677 GAAGGAGTCGTTT-GAGGAGCTTACGCTTAAAGACACGCTCAAACCGGTTTTGATTCCTT 735
Query 1085 GTTACGACCTCACGAGCTCTGCACCGTTCTTGTTCTCACGTGCTGATGCGTTGGAAACGG 1144
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 736 GTTACGACCTTACGAGCTCTGCACCGTTCTTGTTTTCACGTGCTGATGCGTTGGAAACGG 795
Query 1145 ACGGTTATGATTTTAAGCTGTGGGAAGTTTGTAGAGCTACTTGGGCTGAGCCAGGAGTGT 1204
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 796 ACGGTTATGATTTTAAGCTGTGGGAGGTTTGTAGAGCTACGTGGGCTGAGCCAGGAGTGT 855
Query 1205 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAGACACGGTGTGTAGCTGTTGATGGTG 1264
|||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 856 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAAACGCGGTGTGTGGCGGTTGATGGTG 915
Query 1265 GTTTAGCAATGAGTAATCCAACGGCTGCAGCGATTACTCATGTGTTGCATAATAAGCAAG 1324
||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 916 GTTTAGCTATGAGTAATCCTACGGCTGCAGCAATTACTCATGTGTTGCATAACAAGCAAG 975
Query 1325 AGTTTCCTTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1384
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AGTTTCCGTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1035
Query 1385 TGGTTGATGTTAAGTATGATTGTGATAAGGTTATGAAGTGGAAGGCTAAGCATTGGGCTC 1444
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1036 TGGTTGATGTTAAGTATGATTGTGATAAGGTTCTGAAGTGGAAGGCTAAGCATTGGGCTC 1095
Query 1445 GACCTGCGGTTCGGATTTCTGCTGATGGAGCAGCTGATACTGTGGATCAGGCTGTTTCCA 1504
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1096 GGCCTGCGGTTCGGATTTCTGCTGATGGAGCGGCTGATACTGTGGATCAGGCTGTTTCCA 1155
Query 1505 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1215
Query 1565 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1275
Query 1625 TGGGAGTAGCAGAGGAGATGCTGAAGCAGAAGAATGCAGAGTCTGTTCTGTTTGGTGGTA 1684
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1276 TGGGAGTAGCAGAGGAGATGCTGAGGCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTA 1335
Query 1685 AGAAAATCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTAGTGC 1744
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1336 AAAAAATCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGC 1395
Query 1745 TAGAACACCAGAGGAGGAGTTGTAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1804
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1396 TCGAACACCAGAGGAGGAGTTGCAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1455
Query 1805 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAATATTTT 1864
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1456 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAAGATTTT 1515
Query 1865 TAAATTGTATAGATTT 1880
|| |||||||||||||
Sbjct 1516 TATATTGTATAGATTT 1531
> Ahg485912 jgi|Araly1|485912|fgenesh2_kg.5__1904__AT3G54950.1
Length=2083
Score = 885 bits (479), Expect = 0.0
Identities = 942/1162 (81%), Gaps = 46/1162 (4%)
Strand=Plus/Plus
Query 659 TTAAGAACCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGA 718
|||||||||||||||||||| | ||| || |||| |||||| | ||||||||||||||||
Sbjct 708 TTAAGAACCAGAGAGGTAAAATCTGTATTCTGAGCATCGATGGAGGTGGAATGAGAGGGA 767
Query 719 TTATACCTGGAAAAGCTTTGGCTTATCTGGAACATGCTCTGAAATCGAAATCGGGTGACC 778
|| |||| || || |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 768 TTTTACCCGGTAAGGCTTTGGCTTATCTAGAACACGCTCTGAAATCTAAATCGGGTGACC 827
Query 779 CGAATGCTCGAATCGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGTGGGATTT 838
||||||| |||||||| |||||||| || ||||| |||| |||||||| ||||||||||
Sbjct 828 CGAATGCCCGAATCGCCGATTACTTTGATGTAGCCGCCGGGTCCGGTATAGGTGGGATTT 887
Query 839 TCACGGCGATGCTT-TTTGCGTCGAGCGATGGTAACCGTCCGATCTTCAAAGCGGAAGAC 897
||| |||||| || || | ||| || || ||||||||||||||||||||||| || |||
Sbjct 888 ACACAGCGATG-TTGTTCGGGTCAAGAGACGGTAACCGTCCGATCTTCAAAGCAGAGGAC 946
Query 898 ACGTGGCGGTTTTTAGCTATGAAAGGTAAAAGCT-TTTACAACAAATCACCACCGG-GG- 954
||||||| ||| ||| | | |||| | || | | ||| || | | | || ||
Sbjct 947 ACGTGGCAGTTCTTAACGA-GAAACGCCAAGGGTCTTT---ACGGAGGAGGA--GGAGGA 1000
Query 955 ATAC-T-AAACAGGGT-TATGAAAACCGGGTCGGGTGGTTCGGGT--GGGTCAGGTTCGA 1009
|| | | |||| |||| | ||| ||||||||||||| ||| | | ||| | || | |
Sbjct 1001 AT-CTTGAAAC-GGGTCT-TGAGAACCGGGTCGGGTTGTT--GTTCCGGGAC-GG--CTA 1052
Query 1010 AGCTT-GAGAAAGCGATGAAGGAGTCTTTCGAAGAGCTTACGCTT-AAGGATACGCTTAA 1067
|| || |||||| |||||| ||||||||| ||||| || ||| ||||| ||||||||
Sbjct 1053 AG-TTAAAGAAAGTGATGAAAGAGTCTTTCTCGGAGCTAAC-CTTAAAGGACACGCTTAA 1110
Query 1068 ACCGGT-TTTGATTCCTTGTTACGACCTCACGAGCTCTGCACCG-TTCTTGTTCTCACGT 1125
|||||| || || ||||| |||||||||| |||||||| ||| ||| ||||||||||
Sbjct 1111 ACCGGTGCTT-ATACCTTGCTACGACCTCAAAAGCTCTGCCCCGTTTC-TGTTCTCACGC 1168
Query 1126 GCTGATGCG-TTGGAAACGGACGGTTATGATTTTAAGCTGTGGGAAGTTTGTAGAGCTAC 1184
|| |||||| || || |||||||| |||||||||| ||| ||||| ||||||||||| ||
Sbjct 1169 GCCGATGCGCTT-GAGACGGACGGCTATGATTTTAGGCTCTGGGAGGTTTGTAGAGCGAC 1227
Query 1185 TTGGGCTGAGCCAGGAGTGTTTGAGCCGGTGGAGATG-AGATCAGTTGATGGTAAGA-CA 1242
|||||||||||| || ||||||||||||||||||||| || || |||||||| ||| ||
Sbjct 1228 TTGGGCTGAGCCGGGGGTGTTTGAGCCGGTGGAGATGAAG-TCGGTTGATGGGCAGACCA 1286
Query 1243 CGGTGTGTAGCTGTTGATGGTGGTTTAGCAATGAGTAATCCAACGGCTGCAGCGATTACT 1302
|||||| || |||| ||| || ||||| ||||| ||||| || || || || || ||
Sbjct 1287 -AGTGTGTGGCCGTTGGTGGAGGATTAGCGATGAGCAATCCCACAGCGGCTGCAATCACG 1345
Query 1303 CATGTGTTGCATAATAAGCAAGAGTTTCCTTTTGTTAGAGGTGTTGAGGATTTGCTTGTG 1362
|||||| |||| || ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1346 CATGTGCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTGAGGATTTGCTTGTG 1405
Query 1363 TTGTCACTTGGTACGGGACAGTTGGTTGATGTTAAG-TATGATTGTGATAAGG-TTATGA 1420
||||| ||||||| ||| |||||| ||||||||| | ||||| | |||| || |||| |
Sbjct 1406 TTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTA-GCTATGAGTATGATC-GGATTATCA 1463
Query 1421 AGTGGAAGGCTAAGCATTGGGCTCGACCTGCGGTTCGGATTTCTGCTGATGGAGCAGCTG 1480
|||||||||||||||||||||| || || |||| || |||||| ||| || || ||||
Sbjct 1464 AGTGGAAGGCTAAGCATTGGGCCCGTCCCGCGGCTCTTATTTCTAATGACGGTGCTGCTG 1523
Query 1481 ATACTGTGGATCAGGCTGTTTCCATGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCC 1540
| || || ||||| ||||| ||||||| |||||||| || | || |||||||| ||||
Sbjct 1524 ACACCGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTAGTAACTATGTCC 1583
Query 1541 GTATTCAGGCGAATGGATCAAGCTTTGGTCCGTGCAAACCAAACATAGACACAGATGCGA 1600
| |||||||||||||| || ||||| || || || | ||||||||||||||||| | |
Sbjct 1584 GGATTCAGGCGAATGGGTCGAGCTTAGGACCTTGTAGTCCAAACATAGACACAGACCCTA 1643
Query 1601 GTCCAAGCAATGTGAATATGCTTGTGGGAGTAGCAGAGGAGATGCTGAAGCAGAAGAATG 1660
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1644 GAGGGAGCAATGTGAATATGCTGGTGGGAGTAGCAGAGGAGATGCTGAAGCAAAAGAATG 1703
Query 1661 CAGAGTCTGTTCTGTTTGGTGGTAAGAA-AATCAATGAAGAAAGCAA-TTATGAGAAGCT 1718
|| |||||| ||||||| ||||| || |||| ||||| | ||||| || ||||||||
Sbjct 1704 TTGAATCTGTTTTGTTTGGAGGTAA-AAGAATCGATGAACAGAGCAACTTC-GAGAAGCT 1761
Query 1719 GGATTGGTTAGCCGGTGAACTAGTGCTAGAACACCAGAGGAGGAGTTGTAGAATCGCTCC 1778
|| ||||||||||| ||||| || || || || || ||||| | | | |||||||||||
Sbjct 1762 TGACTGGTTAGCCGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCAGAATCGCTCC 1821
Query 1779 CACTGTAGCGTTCAAGCAATCC 1800
|| ||||||||||||||||||
Sbjct 1822 AACCGTAGCGTTCAAGCAATCC 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5