BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39240.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934507 jgi|Araly1|934507|scaffold_402495.1 952 0.0
Ahg321615 jgi|Araly1|321615|fgenesh1_pm.C_scaffold_4001672 872 0.0
Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139 678 0.0
> Ahg934507 jgi|Araly1|934507|scaffold_402495.1
Length=1525
Score = 952 bits (515), Expect = 0.0
Identities = 644/706 (91%), Gaps = 10/706 (1%)
Strand=Plus/Plus
Query 787 TTGTTGGACGATTTAATGGTCGAATCTTTTAATCATCTTAAATCTTGTCAAGATGCTGGT 846
||||||||||| ||||||||| || |||| ||||||||||||| ||||||||| |||||
Sbjct 738 TTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTTAAATCCTGTCAAGATTCTGGT 797
Query 847 CGTCTGGATGAGGTGTTTGAAAATCTCTTCGAGTCGTTTGAGAACTTAATTCTGAACACG 906
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct 798 CGTCTGGATGAGGTGTTTGAAAATCTGTTCGAGTCGTTTGTGAACTTAATTCTGAACGCG 857
Query 907 CAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTGAAAAT 966
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CAAAAAACAAAAATTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTGAAAAT 917
Query 967 TGTGGTGTGAAGTTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAGCAACAACAA---T 1023
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |
Sbjct 918 TGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTCAACAGCAACAACAACAAT 977
Query 1024 CAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTCGTGCAAATTTT 1083
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 978 CAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTGGCTCGTGCAAAGTTT 1037
Query 1084 TTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGTGTGCTGATTAT 1143
||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1038 TTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGATGAGTGTGCGGATTAC 1097
Query 1144 TGCAGAACATGCAATGATGATGCTAGGCCTGAAGTACACCAAGTTTTCTATTCAGGATGT 1203
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1098 TGCAGAACATGCAATGATGATGCTAGGCCTGAAGAACATCAAGTTTTCTATTCAGGATGT 1157
Query 1204 CAGGCCATTTTATACGTGCTATGCTTTCGAATGAGATCAATCCTAGAGGTTCCTCACTTC 1263
||||| || || || || ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1158 CAGGCAATCTTGTATTTGTTATGCTTCCGAATGAGATCAATCCTAGATGTTCCTCGCTTC 1217
Query 1264 CAATCACAGCTTACACCATTGGAGTCAGTTTTGTCTCACAAACTAGACCCGCTGAGGGTA 1323
| ||| ||| |||||||||||||||| ||||| |||||||||||||||||| ||| |||
Sbjct 1218 CGATCGCAGATTACACCATTGGAGTCGGTTTTATCTCACAAACTAGACCCGTTGAAGGTG 1277
Query 1324 TGCCTTTCATCTGTAGTTTCTGAGTTCCTT-ATACAAGCCAAAGCCTGTGGCCTGTTCAT 1382
|||||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 1278 TGCCTTCCATCTGTAGTTTCTGAGTTCCTTTAT-CAAGCCAAAGCCGGTGGTCTGTTCAT 1336
Query 1383 TGTCTCCGACGCCTTCATTTTTGATGACCTATCC-GAGTCTGAGCTCTCTCGTGCTTTAG 1441
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1337 TGTCTCCGACGCCTTCATTTTTGATGACCTA-CCTGAGTCTGAGCTTTCTCGTGCTTTAG 1395
Query 1442 GTGGCTTCTTCCCATTC--CC-GTGGTTGTTGGAAAAATCTAACAG 1484
||||||||||||||||| || ||| ||| || ||||| |||||||
Sbjct 1396 GTGGCTTCTTCCCATTCGACCCGTGCTTGCTGAAAAAAACTAACAG 1441
Score = 701 bits (379), Expect = 0.0
Identities = 511/573 (89%), Gaps = 15/573 (3%)
Strand=Plus/Plus
Query 211 ACACTCTTGAAAATTCTATCACACTCTGTTGCTTGCTTAGATGACGTTCACCATAACCAC 270
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
Sbjct 108 ACACTCTTGAAAATTCTATCACGCTCTGTTGTTTGCTTAGATGAAGTTCACCATAAAGTC 167
Query 271 CTTCTTCAACTTATTCTTGGAACGAGAATTTGGGATCACAAACCTAATGT-AA--T-A-- 324
|||||| | | |||| |||| |||| |||||||||||||||||||||||| || | |
Sbjct 168 CTTCTTGATCGTATTTTTGGGACGACAATTTGGGATCACAAACCTAATGTAAATGTAATG 227
Query 325 TATGCATTGCTGGACTTAATCATATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCT 384
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 228 TATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCT 287
Query 385 TGTTTAGATACGCTCGTCTCTAATTTACGTTCGCAACCCCGCAAACTCGACAATAAGATG 444
|||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 288 TGTTTAAATATGCTCGTCTCTAATTTACTTTCGCAACCCCGCATACTCGACAATAAGATG 347
Query 445 CTGGAAGTTCTTTCCAGGGTGCACGCAGCTCTTCACAAGATTTCTTATTTAGTTCCCCTT 504
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 348 CTGGAACTTCTTTCCCGGGTGCACGCAGCTCTTCACAAGATTTCTTTTTTAGTTCCCCTT 407
Query 505 GCTCCCTCTATATTACTGCCCATACTCGCCCAGAGTATGCCTAGCGTACACGACAAAG-C 563
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 408 GCTCCCTCGATACTACTGCCCATACTCGCCCAGAGTTTGCCTAGCGTACACGACAAAGAC 467
Query 564 TCGCTTGCAGGTTGTAGTGCCATATGTGAAGAACTTGTTGAAGTTGGAGAACAGCTCAAT 623
||||| ||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct 468 -CGCTTTCAGCTTGTAGTGCCATACGTGGAGAACTTGTTGCAGTTGGAAAACAGCTCAAT 526
Query 624 CATCGGAAAAGTTGTTGGCAAGGAT-ATTCTTATGATGGTGATGGGGAGGTTCCGAGATC 682
| ||||||||| ||||||| | | ||||||| | |||| |||| |||||| | |||||
Sbjct 527 C---GGAAAAGTTTTTGGCAACG-TCATTCTTAGGGTGGTAATGGAGAGGTTGCTAGATC 582
Query 683 TCGATTCGGAGATTGAGTGCGATGATAATCTCCAAAATGACTCCAGTC-TAGCAATGTTT 741
|||||| |||||||| ||| ||||||| ||||||| |||||||| | | | || ||||||
Sbjct 583 TCGATTTGGAGATTGGGTGGGATGATATTCTCCAAGATGACTCC-GCCATTGCCATGTTT 641
Query 742 GATATGGAACTTGACGTTGCAGTTGAAGGCACT 774
||||||||||||||| |||||||||||||||||
Sbjct 642 GATATGGAACTTGACCTTGCAGTTGAAGGCACT 674
> Ahg321615 jgi|Araly1|321615|fgenesh1_pm.C_scaffold_4001672
Length=1755
Score = 872 bits (472), Expect = 0.0
Identities = 617/685 (90%), Gaps = 18/685 (3%)
Strand=Plus/Plus
Query 776 TAGTTTCTAAATTGTTGGACGATTTAATGGTCGAATCTTTTAATCATCTT-AAATCTTGT 834
|||| ||||||| |||||||||||| |||||| ||||||| |||||||| || || ||
Sbjct 827 TAGTCTCTAAATCGTTGGACGATTTGATGGTCCTATCTTTTCATCATCTTGAATTC-TGC 885
Query 835 CAAGATGCTGGTCGTCTGGATGAGGTGTTTGAAAATCTCTTCGAGTCGTTTGAGAACTTA 894
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 886 CAAGATGCTGGTCGTCTGGATGAGGTGTTTGAAAATCTGTTCGTGTCGTTTGAGAACTTA 945
Query 895 ATTCTGAACACGCAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTA 954
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 946 ATTCTGAACACGCAAAAAACAAAAATTTCACAGTTCCTGATGTTCTATGCGTGCTCACTA 1005
Query 955 GATCCTGAAAA-TTGTGGTGTGAAGTTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAG 1013
|||||| |||| |||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1006 GATCCT-AAAAGTTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTCTCCAG 1064
Query 1014 CAACAA-CAATCAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTC 1072
|||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1065 CAACAAACA-TCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTGGCTC 1123
Query 1073 GTGCAAATTTTTTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGT 1132
||||||| |||||| || |||||||||||||||||||||| |||||||||||||| || |
Sbjct 1124 GTGCAAAGTTTTTGCCTACTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGAGGATT 1183
Query 1133 GTGCTGATTATTGCAGAACATGCAATGATGATGCTAGGCCTGAAGTACACCAAG-TTTTC 1191
|||| ||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1184 GTGCGGATTACTGCAGAACATGCAATGATGATGCTAGGCCTGAAGAACATCAAGATTTT- 1242
Query 1192 TATTCAGGATGTCAGGCCATTTTATACGTGCTATGCTTTCGAATGAGATCAATCCTAGAG 1251
||||||||||||||||| || || || ||||||||||| |||||||||||||||||||
Sbjct 1243 TATTCAGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCAATCCTAGCT 1302
Query 1252 GTTCCTCACTTCCAATCACAGCTTACACCATTGGAGTCAGTTTTG-TCTCACAAACTAGA 1310
||||||| ||||| ||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1303 GTTCCTCGCTTCCTATCGCAGCTTACACCATTGGAGTCGGTTTTTATCTCACAAACTAGA 1362
Query 1311 CCCGCTGAGGGTATGCCTTTCATCTGTAGTTTCTGAGTTCCTTATACAAGCCAAAGCCTG 1370
|||| || | ||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 1363 CCCG-TG----T--GCCTTCCATCTGTAGTTTCTGAGTTCCTTAAACAAGCCAAAGC-TG 1414
Query 1371 -TGGCCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTATCCGAGTCTGAGCTCT 1429
||| || |||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1415 GTGGTATGATCATTGTCTCGGAAGCCTTCATTTTTGATGACCTACCCGAGTCTGAGCTCT 1474
Query 1430 CTCGTGCTTTAGGTGGCTTCTTCCC 1454
|||||||||| ||||| ||||||||
Sbjct 1475 CTCGTGCTTTTGGTGGATTCTTCCC 1499
Score = 859 bits (465), Expect = 0.0
Identities = 690/793 (87%), Gaps = 38/793 (5%)
Strand=Plus/Plus
Query 1 ATGGGAGC---AGAAGAAGTGGAGACTGCTGACTTAAGCGACAAAGCTTTGGTGTCT-GC 56
|||||||| |||||||||||| | |||||| |||||||||||||||||||||| | ||
Sbjct 1 ATGGGAGCAGAAGAAGAAGTGGACAATGCTGAGTTAAGCGACAAAGCTTTGGTGT-TAGC 59
Query 57 CATTAGAGAGGTCCTTGCATCTGCCCAAAGTGGGGATACCGAT-CAATATAAT-GAG-C- 112
||||||||||||||||||||||| ||||||| | || | | | | | ||| ||| |
Sbjct 60 CATTAGAGAGGTCCTTGCATCTGTCCAAAGT-GTGA-GTC-TTGC-ACA-AATGGAGACA 114
Query 113 TTGTTCAGT-TAATGTACATCAAAAAGAAGAAATCTGGTGACGATGCTATGGCACAGCCA 171
| ||| | |||||||||| ||| |||||||||| || | ||||| |||||||| |
Sbjct 115 CCGATCAATATAATGTACAT--TAAA-AAGAAATCTGATGGCCATGCTGTGGCACAGAAA 171
Query 172 GAGGTGCCTGATGATGTCGATGTTGTGGCTCAGCGAGAGACACTCTTGAAAATTCTATCA 231
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GAGGTGCCTGAAGATGTCGATGTTGTGGCTCAGCGAGAGACACTCTTGAAAATTCTATCA 231
Query 232 CACTCTGTTGCTTGCTTAGATGACGTTCACCATAACCACCTTCTTCAACTTATTCTTGGA 291
| |||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 232 CGCTCTGTTGTTTGCTTAGATGAAGTTCACCATAACCGGCTTCTTGTACTTATTCTTGGG 291
Query 292 ACGAGAATTTGGGATCACAAACCTAATGTAA-T--A-T--ATGCATTGCTGGACTTAATC 345
||||||||||||||||||| ||||||||||| | | | |||||||||||||| |||||
Sbjct 292 ACGAGAATTTGGGATCACATACCTAATGTAAATGTAATGTATGCATTGCTGGACCTAATC 351
Query 346 ATATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCTTGTTTAGATACGCTCGTCTCT 405
|||||||||||||||||||||||||| |||||| |||||||||| ||| |||||| |||
Sbjct 352 GTATCACTGGCCACTACTAGTGGAAAGTATCTGATCTCTTGTTTAAATATGCTCGTATCT 411
Query 406 AATTTACGTTCGCAACCCCGCAAACTCGACAATAAG-ATGCTGGAAGTTCTTTCCAGGGT 464
|||||||||||||||||||||| |||| |||||||| | || ||||||||||||| ||||
Sbjct 412 AATTTACGTTCGCAACCCCGCATACTCAACAATAAGGA-GCAGGAAGTTCTTTCCCGGGT 470
Query 465 GCACGCAGCTCTTCACAAGATTTCTTATTTAGTTCCCCTTGCTCCCTCTATATTACTGCC 524
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 471 GCACGCAGCTCTTCACAAAATTTCGTATTTAGTTCCCCTTGCTCCCTCAATATTACTGCC 530
Query 525 CATACTCGCCCAGAGTATGCCTAGCGTACACGACAAAGCTCGCTTGCAGGTTGTAGTGCC 584
||||||||||||| | |||||||||||| ||||||||| | | | | ||||||||||
Sbjct 531 CATACTCGCCCAGGGAATGCCTAGCGTAGACGACAAAGA-C-CAT-C---TTGTAGTGCC 584
Query 585 ATATGTGAAGAACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCAA 644
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 ATATGTGGAGAACTTGTTGAAGTTGGAGAACAGCTCAATCATCGGAAAAGTTGTTGGCAA 644
Query 645 -GGATATTCTTATGATGGTGATGGGGAGGTTCCGAGATCTCGATTCGGAGATTGAGTGCG 703
|| ||||||| | | || |||| |||||| ||||||||||||| | |||||| ||| |
Sbjct 645 CGGG-ATTCTTAGGGTTGTAATGGAGAGGTTGCGAGATCTCGATTTGAAGATTGGGTGGG 703
Query 704 ATGATA-ATCTCCAAAATGACTCCAGTC-TAGCAATGTTTGATATGGAACTTGACGTTGC 761
|||||| | |||||| ||||||||| | |||| ||||||||||||||||||||| ||||
Sbjct 704 ATGATATA-CTCCAAGATGACTCCAC-CATAGCCATGTTTGATATGGAACTTGACCTTGC 761
Query 762 AGTTGAAGGCACT 774
|||||||||||||
Sbjct 762 AGTTGAAGGCACT 774
Score = 228 bits (123), Expect = 1e-58
Identities = 165/185 (89%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1541 CGGAAGTGACAGTGTATGGAGATACAGACAATGAGGAGGA--CT-CTGATGATGACGTTG 1597
||||||| | |||||||||||||||||| | ||||||||| | ||||||||| ||||
Sbjct 1571 CGGAAGTCATAGTGTATGGAGATACAGAGAGTGAGGAGGATTGTGATGATGATGATGTTG 1630
Query 1598 ATCCTGATAACGAGATGAACAAGATGTCTATAACTCCTAAACACTCAGTCATGCACGAAA 1657
|| |||||||||| ||||||||||||||| |||||||| |||||| |||||| |||||
Sbjct 1631 TTCTTGATAACGAGGTGAACAAGATGTCTACAACTCCTACACACTCCTTCATGCGCGAAA 1690
Query 1658 CAGAGAGACTCCTGAAGATGCCTTCGAGGATCAGTCCATCAACTAGTCCTCGTGAATCCC 1717
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1691 CAGAGAGACTCTTGAAGATGCCTTCGAGGATCAGTCCATCAACTAGTCCTCGTGAATCTC 1750
Query 1718 TCTGA 1722
|||||
Sbjct 1751 TCTGA 1755
> Ahg912885 jgi|Araly1|912885|Al_scaffold_0001_3139
Length=1833
Score = 678 bits (367), Expect = 0.0
Identities = 575/673 (85%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 788 TGTTGGACGATTTAATGGT-CGAATCTTTTAATCATCTT-AAATCTTGTCAAGA-TGCTG 844
|||||||| | || ||||| | || ||||| |||||||| ||| | |||||| | | |||
Sbjct 851 TGTTGGACAAATTGATGGTCCTAA-CTTTTGATCATCTTGAAA-CCTGTCAAAACT-CTG 907
Query 845 GTCGTCTGGATGAGGTGTTTGAAAAT-CTC-TTCGAGTCGTTTGAGAACTTA-ATTCTGA 901
||||| |||||||||| |||| |||| ||| ||| ||||||||||||| ||| |||||||
Sbjct 908 GTCGTTTGGATGAGGTATTTG-AAATCCTCTTTC-AGTCGTTTGAGAA-TTATATTCTGA 964
Query 902 ACACGCAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTG 961
|||| | |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 965 ACACATACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCTCACTAGATCCTG 1024
Query 962 AAAATTGTGGTGTGA-AGTTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAGCAACAA- 1019
|| |||||||||||| | |||||||||||||||||||| | || ||||||||| |||||
Sbjct 1025 AATATTGTGGTGTGAGA-TTTGCCAGTAAGCTGTTGGACATATATCTCTCCAGAAACAAA 1083
Query 1020 CAATCAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTCGTGCAAA 1079
| || | ||||||||| || ||||||| | |||||||||||||||||| |||||| |||
Sbjct 1084 CC-TCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGTCTCGTGGAAA 1142
Query 1080 TTTTTTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGTGTGCTGA 1139
|||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 1143 GTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGATTGTGCGGA 1202
Query 1140 TTATTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGTACACCAAGTTTTCTATTCAG 1198
||||||||||||||||||||||||| | | ||| |||| ||| ||||| |||||||| |
Sbjct 1203 ATATTGCAGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCAAGTGTTCTATTCTG 1261
Query 1199 GATGTCAGGCCATTTTATACGTGCTATGCTTTC-GAATGAGATCAATCCTAGAGGTTCCT 1257
|||||||||| || || || ||||||||||| | || ||||||| || || || |||||
Sbjct 1262 GATGTCAGGCAATCTTGTATGTGCTATGCTTCCAGA-TGAGATCCATACTGGACATTCCT 1320
Query 1258 CACTTCCAATCACAGCTTACACCATTGGAGTCAGTTTTGTCTCACAAACTAGACCCGCTG 1317
| ||| || | ||||| ||| | ||||||||| |||| |||||||||||| |||| |||
Sbjct 1321 CGCTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTATCTCACAAACTAAACCCACTG 1380
Query 1318 AGGGTATGCCTTTCATCTGTAGTTTCTGAGTTCCTTATACAAGCCAAAGCCTG-TGGCCT 1376
| ||| |||||| ||||||||||||| |||||||||| |||||||||||| || ||| ||
Sbjct 1381 ATGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC-TGGTGGTCT 1439
Query 1377 GTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTATC-CGAGTCTGAGCTCTCTCGTG 1435
|||||||||||| || ||||||||||| ||||||||| | |||||||||||||||| |||
Sbjct 1440 GTTCATTGTCTCAGAAGCCTTCATTTTCGATGACCTA-CACGAGTCTGAGCTCTCTTGTG 1498
Query 1436 CTTTAGGTGGCTT 1448
|||| ||||||||
Sbjct 1499 CTTTTGGTGGCTT 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5