BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39270.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1 1724 0.0
Ahg897523 jgi|Araly1|897523|Al_scaffold_0005_1489 771 0.0
Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1 132 7e-30
> Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1
Length=1176
Score = 1724 bits (933), Expect = 0.0
Identities = 1098/1176 (93%), Gaps = 18/1176 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCCTCAGGCCGGCGACGACGACGATAAAGA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCTTCAGGCCGGCGACGACGATGGCGAAGA 60
Query 61 ATActttttcttctctctttattaggtc----tc-tc-tc-t--tcttcttcgtctGGGT 111
||||| |||||||| |||| |||||||| || || || | ||||||||||||||||
Sbjct 61 ATACTCTTTCTTCTTTCTTAATTAGGTCTATTTCTTCTTCTTCCTCTTCTTCGTCTGGGT 120
Query 112 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCTGCGGCTCAGCTCGGGAAG--T-C-T 167
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | | |
Sbjct 121 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCCGCGTCTCAGCTCGAGAAGTCTACGT 180
Query 168 -T-CGTCTACGTCAACGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 225
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTACGTCTCCGTCTCCGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 240
Query 226 GTCCTGGTGTTGGTAAAGGAACCTATGCCTCTCGTCTCTCTTCTCTCCTCGGCGTTCCTC 285
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 241 GTCCTGGTGTTGGTAAAGGAACGTATGCTTCACGTCTCTCTTCTCTCCTCGGCGTTCCTC 300
Query 286 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGctctcctcctctggcctcctctcctctc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGCTCTCCTCCTCTGGCCTCCTCTCCTCTC 360
Query 346 AGCTCAAGGAGCTTGTTAACCATGGAAAACTAGTTCCTGATGAATTCATAATAAGTTTGT 405
|||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 361 AGCTGAAGGAGCTTGTTAACCATGGGAAATTGGTTCCTGATGAATTCATAATAAGTTTGT 420
Query 406 TATCAAAGCGTCTCCAAGCTGGCAAAGACAAGGGTGAATCTGGATACATTCTTGATGGTT 465
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TATCAAAGCGTCTCCAAGCTGGCAAAGAGAAGGGTGAATCTGGATACATTCTTGATGGTT 480
Query 466 TTCCACGCACCGTGACTCAAGCGGAAATACTGGAGGGAGTAACTAATATCGATCTGGTGA 525
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 TTCCACGAACCGTGACACAAGCGGAAATACTGGAGGGGGTAACTAATATCGATCTGGTGA 540
Query 526 TTAACCTGAAGCTACGAGAAGAGGCATTGCTTGCGAAATGTTTAGGAAGAAGAATTTGCA 585
| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 541 TCAACCTGAAGCTTCGAGAAGAGGCACTACTTGCCAAATGTTTAGGAAGAAGAATTTGCA 600
Query 586 GCGAGTGTGGTGGAAACTATAACGTTGCCTGCATTGATATCAAAGGTGATGATGATACTC 645
| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 601 GTGAGTGTGGTGCAAACTATAACGTTGCGTGCATTGATATCGAAGGTGATGATGATAGTC 660
Query 646 CCAGAATGTATATGCCTCCTCTTCTTCCTCCGCCAAACTGTGAATCGAAGCTTATAAGCC 705
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 CCAGAATGTACATGCCTCCTCTTCTTCCTCCGCCAAACTGTGCATCGAAGCTTATAAGCC 720
Query 706 GAGCTGATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGACTC 765
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 721 GAGCTGATGACACCGAAGACGTTGTCAAGGAAAGACTCCGGATTTACAACAAAATGACTC 780
Query 766 AACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTG 825
|||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 781 TACCAGTGGAGGAATTCTACAAGAAGCGCAGGAAGCTATTGGAATTTGAATTACCCGGTG 840
Query 826 GAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCATTACACCTTGAAGACGATAAACAGT 885
|||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 841 GAATTCCAGAGTCATGGCCAAGGCTCCTTAGAGCATTACACCTTGAAAACGATAAACAGT 900
Query 886 CTGCAATAGCCTAATCTCTCTCTGCATTTTATGATTGAATCAAACAACTTGTACTACATT 945
||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 901 CTGCAATAGCCTAATTTCTCTCGGCATTGTATGATTGAATCAAACAGCTTGTACTACATT 960
Query 946 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1020
Query 1006 TGTCCCACTATGGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGG 1065
|||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1021 TGTCCCTTTGTGGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGG 1080
Query 1066 TCCACTATAGATAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAAT 1122
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1081 TCCACTATAGATAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAAT 1140
Query 1123 TGTTTATATATGCTTACCAAAGAAATTATGTAATTC 1158
||||| ||||||||||||||| ||||||||||||||
Sbjct 1141 TGTTTCTATATGCTTACCAAAAAAATTATGTAATTC 1176
> Ahg897523 jgi|Araly1|897523|Al_scaffold_0005_1489
Length=708
Score = 771 bits (417), Expect = 0.0
Identities = 480/510 (94%), Gaps = 6/510 (1%)
Strand=Plus/Plus
Query 141 GAGGCTGCGGCTCAGCTCGGGAAGTCTTCGTCTACGT-CA-----ACGTCTCCATACAAA 194
||||| ||| ||||||||| ||||||||| ||||||| || ||||||||||||||
Sbjct 10 GAGGCCGCGTCTCAGCTCGAGAAGTCTTCCTCTACGTCCACGTCTCCGTCTCCATACAAA 69
Query 195 GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC 129
Query 255 TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA 189
Query 315 GAGctctcctcctctggcctcctctcctctcAGCTCAAGGAGCTTGTTAACCATGGAAAA 374
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 190 GAGCTCTCCTCCTCTGGCCTCCTCTCCTCTCAGCTGAAGGAGCTTGTTAACCATGGGAAA 249
Query 375 CTAGTTCCTGATGAATTCATAATAAGTTTGTTATCAAAGCGTCTCCAAGCTGGCAAAGAC 434
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 250 TTGGTTCCTGATGAATTCATTATAAGTTTGTTATCAAAGCGGCTCCAAGCTGGCAAAGAG 309
Query 435 AAGGGTGAATCTGGATACATTCTTGATGGTTTTCCACGCACCGTGACTCAAGCGGAAATA 494
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct 310 AATGGTGAATCTGGTTACATTCTTGATGGTTTTCCACGAACCGTGACACAAGCGGATACA 369
Query 495 CTGGAGGGAGTAACTAATATCGATCTGGTGATTAACCTGAAGCTACGAGAAGAGGCATTG 554
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 370 CTGGAGGGAGTAACTAATATCGATCTGGTGATCAACCTGAAGCTTCGAGAAGAGGCATTA 429
Query 555 CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGGAAACTATAACGTTGCC 614
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 430 CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGCAAACTATAACGTTGCG 489
Query 615 TGCATTGATATCAAAGGTGATGATGATACT 644
|||||||||||| |||||||||||||||||
Sbjct 490 TGCATTGATATCGAAGGTGATGATGATACT 519
> Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1
Length=2512
Score = 132 bits (71), Expect = 7e-30
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 1078 AGTTGAAAACTCTTTGTCAT---AACAGAGGTTTGACTTACAACGAATTGTTTATATATG 1134
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2512 AGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAATTGTTTCTATATG 2453
Query 1135 CTTACCAAAGAAATTATGTAATTCAATA 1162
||||||||| ||||||||||||||||||
Sbjct 2452 CTTACCAAAAAAATTATGTAATTCAATA 2425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5