BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39280.2
Length=2846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1 3705 0.0
Ahg897524 jgi|Araly1|897524|Al_scaffold_0005_1490 2726 0.0
Ahg324032 jgi|Araly1|324032|fgenesh1_pm.C_scaffold_5001576 1982 0.0
Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1 226 7e-58
> Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1
Length=2512
Score = 3705 bits (2006), Expect = 0.0
Identities = 2339/2493 (94%), Gaps = 49/2493 (2%)
Strand=Plus/Plus
Query 325 AGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCGAGAATATGTT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 AGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCGAGAATATGTT 96
Query 385 AATATCTACAAGGAGGAAGAAGTGGAGAGGTCGGCAAGGTGGAGCAATTTCCTGGAATTT 444
|||||||||||||||| |||| ||||||||| || ||||||| ||||||||||||| ||
Sbjct 97 GATATCTACAAGGAGGAGGAAGAGGAGAGGTCAGCCAGGTGGAACAATTTCCTGGAAGTT 156
Query 445 CATGCAGAATCTGGCGTGTCACCTACGAATGGATCGTCTGAAAATACTCATGTCA-ATCC 503
||||||||||||||| | | |||| ||||||||||||||| |||||| | ||||
Sbjct 157 CATGCAGAATCTGGC--G-----T--GAATAGATCGTCTGAAAATAATCATGT-ACATCC 206
Query 504 aagtgaaagtgacaagaaaaaagaaaaggaattaaacaagggtgctgaaagaaaagaTCT 563
|| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 207 AATTGAGAGTGACAAGAAAAAAGAAGAGGAATCAAACAAGGGTGCTGAAAGAAAAGATCT 266
Query 564 -GAATGCTGACAAGCCAGGTTCTGATTTAACTCCTGGGAATGCGAGAGAGGAAGATGAAG 622
||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGAA-ACTGAAAAGCCAAGTTCTGATTTAACTCCTGGGAATGCGAGAGAGGAAGATGAAG 325
Query 623 TTCCCAATAG-AGAGAAGAATGTGCACAAAGTTCAGTTATGGGCTGAGATCAGGCCATCT 681
|||||| | | || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 326 TTCCCAGT-GCAGCGAAGAATGTGCACAAATTTCAGTTATGGGCTGAGATCAGACCATCT 384
Query 682 CTTCAAGCAATTGAGGACTTGATGAGTGTCCGTGTCAAAATGAAGGGGGATTCCACAAAT 741
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 385 CTTCAAGCAATTGAGGACTTGATGAGTGCCCGTGTCAAAATGAAGGGGGATTCCACAAAT 444
Query 742 GGCGAGCAAGAAGCTCAGAAATTGAATTCCTTAGCCTCAACTGATGAGACCGAGTCTTCA 801
|||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 445 GGCGAGCAAGAAGCGCAGAAATTGAATTCCTTACCCTCAACTGATGAGACCAAATCTTCA 504
Query 802 AAGGGAGTATGTGAGAATGATTCCGAAGACGAGTTCTATGATGCGGAGAGATCAGATCCA 861
||||| || | |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 505 AAGGGTGTGTCTGAGAATGATTCTGAAGACGAGTTCTATGATGTGGAGAGATCAGATCCA 564
Query 862 ATTCAGGATGGTTCTTCAGATGGCACAAGTGTCTCCAGCATGTCTGCTGCTGCTGATGCA 921
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 565 ATTCAGGATGGTTCTTCAGATGGTGCAAGTGTCTCCAGCATGTCTGCTGCTGCTGACGCA 624
Query 922 GCTTCCCTAGTATCTGCATGCCCCTGGAAAGACGAACTTGAAGTTCTTATTCATGGCGGT 981
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 625 ACTTCTCTAGTATCTGCATGCCCCTGGAAAGACGAACTTGAAGTTCTTGTTCATGGTGGG 684
Query 982 GCACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTTGCGGGAGTCAAGAAACGTCGG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GCACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTTGCGGGAGTCAAGAAACGTCGG 744
Query 1042 GTCAAGAATTATTACCAAAATCTATTAGCTGCAGATAGTCTAGGAAACGACATAGAGCAG 1101
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 745 GTCAAGAATTATTACCAAAATCTGCTAGCTGCTGATAGTCTAGGAAACGACATAGAGCAG 804
Query 1102 GAGCTCATGCAGCATACAGATGAGAAAGGTTCAAGTACAGACCCCCTCTCTGTTGTGGAA 1161
|||| |||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 805 GAGCACATGCAGCATGCAGATGAGAAAGGTTCAAGTACAGACCCCCTCGCTGTCGTGCAA 864
Query 1162 AAATGGAAAGGTCAGATAGAAAAGGATTTACCCCGGACATTTCCAGGTCATCCTGCCCTA 1221
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AAATGGAAAGGACAGATAGAAAAGGATTTACCCCGGACATTTCCAGGTCATCCTGCCCTA 924
Query 1222 GATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCC 1281
||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct 925 GATGATGATTTCAGAGATGCTCTGCGGCGATTGCTAACTGCATATGCTAGGCATAATCCC 984
Query 1282 TCTGTTGGATACTGTCAGGCAATGAATTTCTTCGCTGCACTTTTATTACTTCTGATGCCC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TCTGTTGGATACTGTCAGGCAATGAATTTCTTCGCTGCACTTTTATTACTTCTGATGCCC 1044
Query 1342 GAAGAGAATGCTTTTTGGTCGCTTACAGGAATCATTGATGACTACTTCCATGATTATTAT 1401
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1045 GAAGAGAATGCTTTTTGGTCGCTTATAGGAATCATTGATGACTACTTCCATGATTATTAT 1104
Query 1402 TCAGAAGAGATGCTCGAGTCCCAGGTTGACCAACGAGTTCTGGAGGAGTTACTTCGAGAG 1461
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1105 TCAGAAGAGATGATCGAGTCCCAGGTTGACCAACAAGTTCTGGAGGAGTTGCTTCGAGAG 1164
Query 1462 AGATTTCCTAAATTGGTTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACA 1521
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1165 AGATTTCCAAAATTGGTTCATCATCTAGATTATCTTGGAGTCCAGGTGGCTTGTGTTACA 1224
Query 1522 GGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGTTCTCAGAGTG 1581
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GGGCCATGGTTTCTTTCCATCTTCATTAATATGCTTCCATGGGAAAGTGTTCTCAGAGTG 1284
Query 1582 TGGGATGTGCTTCTATTTGAAGGAAATCGTGTTATGCTTTTCAGAACAGCACTCGCATTG 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1285 TGGGATGTGCTTCTATTTGAAGGAAATCGTGTTATGCTTTTCAGAACAGCACTTGCATTG 1344
Query 1642 ATGGAATTTTATGGTCCTGCATTGGTTACAACCAAGGACATTGGAGATGCTGTTACTTTG 1701
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1345 ATGGAATTTTATGGTCCTGCATTGGTTACAACCAAGGACACTGGCGATGCTGTTACTTTG 1404
Query 1702 CTACAATCAATGACTGGTTCAACATTTGATAGCAGCCAGCTCGTTTTCACTGCTTGCATG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 CTACAATCAATGACTGGTTCAACATTTGATAGCAGCCAGCTCGTTTTCACTGCTTGCATG 1464
Query 1762 GGTTACCAAAATGTACATGAAAGTAAATTGCAGGAACTAAGAAGCAAACACAGGCCAGCA 1821
|||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1465 GGTTACCAGAGTGTACATGAAAGTAGATTGCAGGAATTAAGAAGCAAACACAGGCCAGCA 1524
Query 1822 GTAATAGCTGCATTTGAGGAAAGATTAAAGGGTCTTCAAGCTTGGAGGGATTCAAAAGAC 1881
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1525 GTAATAGCTGCATTTGAGGAAAGATTAAAGGGGCTTCAAGCTTGGAGGGATTCAAAAGGC 1584
Query 1882 ACTGCAACCAAATTACATAATTCCAAGCAAGACCCAAATTCTGTTTTAGCTAGCAAAGCC 1941
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1585 CCTGCGACCAAATTACATAATTCTAAGCAAGACCCAAATTCTGTTTTAGCTAGCAAAGCC 1644
Query 1942 TCATTGTCAAATGGGAGTTTATCTCGTTCTGAATCGGGATCCAGTTATGCAGACGACATC 2001
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1645 TCATCATCAAATGGGAGTTTATCTCGTTCTGAATCGGGATCCAGTTATGCAGACGACGTC 1704
Query 2002 TTTATTAGCCTGACTGGGGATTGTGAGATAGATAT-TTTTCAAGATCTTCAAGGACAGG- 2059
||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct 1705 TTTATTAGCCTGACTGGGGATGGTGAGATAGAT-TGTTTTCAAGATCATCAAGGACAGGT 1763
Query 2060 -----G-T-GAAC--T-----CCACAAGTTGCTTCAGGAGAAAAGATCTGCTTTACTAAG 2105
| | ||| | ||||||||||||| ||||||||||||| |||||||||||
Sbjct 1764 TCTCTGGTTGAAGGGTGAATTCCACAAGTTGCTTGAGGAGAAAAGATCCGCTTTACTAAG 1823
Query 2106 AGCTGAAGAGTTGGAGGTAGCTCTCATGGAGATGGTCAAACAAGACAATCGGCGTCAACT 2165
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1824 AGCTGAAGAGTTGGAGATAGCTCTCATGGAGATGGTCAAACAAGATAATCGACGTCAACT 1883
Query 2166 TAAGGCTAAGATTGAGCAGTTAGAGCAAGGGGTGACAGAGCTTCGAAGACTTGTTTCTGA 2225
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1884 GAAGGCTAAGATTGAGCAGTTAGAGAAAGAGGTGACAGAGCTTCGAAGACTTGTTTCTGA 1943
Query 2226 TAAGAGGGAGCAAGAAAGTGCTATGATACAGGTCTTGATGCGGATGGAGCAAGAACATAA 2285
||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1944 TAAGAGGGAACAAGAAGGTGCTATGATACAGATCTTGATGCGGATGGAGCAAGAACATAA 2003
Query 2286 AGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGATGCAGCAACGCAGAGATATGCTGC 2345
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2004 AGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGATGCAGCAGCACAGAGATATGCTGC 2063
Query 2346 TGAAGTGCTTCAGGAAAAGTATGAAGAGGCTGTTGCAGCTCTCGCGGAGATGGAGGAGAG 2405
|||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 2064 TGAAGTACTTCAGGAAAAGTATGAAGAAGCTGTTGCAGCGCTCGCTGAGATGGAGGAGAG 2123
Query 2406 GGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAA 2465
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 GGCAGTAATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAA 2183
Query 2466 AGCACAACCTTCACCACGGCAACTGAAGCAAGATTTGCCGGTCATGGTCAGTCCCTAGAA 2525
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2184 AGCACAACCTTCACCACGGCAACTGAAGCAAGATTTGCCGGTTATGGTCAGTCCCTAGAA 2243
Query 2526 TCTTATCCAAA--AGACTACATATGA-AAGACCTAAGGAGCAAGTTAACGACGAGAAGTC 2582
|||||||||| ||||||||||||| || |||||||||||||||||| |||| ||||||
Sbjct 2244 TCTTATCCAAGTCAGACTACATATGATAA-ACCTAAGGAGCAAGTTAATGACG-GAAGTC 2301
Query 2583 ATCAACAGAAGGACAAA-CACAAACTTCATAGCAGAAGAACACGAAGCTCTAAGA--C-- 2637
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
Sbjct 2302 ATCAACAGAAGGACAAAACACAAACTTCATAGCAGAAGGACACAAAGCTCTAAGAAACTG 2361
Query 2638 --ACACTCCGTAAGGTATATAATTATACAAATTGCCGATTAGATTGTCGAGATAACTAGT 2695
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2362 CGACACTCCCTAAGGTATATAATTATACAAATCGCCGATTAGATTGTCGACATAACTAGT 2421
Query 2696 AGATATATTGAATTACATAATTTCTTTGGTAAGCATATATAAACAATTCGTTGTAAGTCA 2755
|||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2422 AGATAT-T-GAATTACATAATTTTTTTGGTAAGCATATAGAAACAATTCGTTGTAAGTCA 2479
Query 2756 AACCTCTGTT---ATGACAAAGAGTTTTCAACT 2785
|||||||||| ||||||||||||||||||||
Sbjct 2480 AACCTCTGTTTGTATGACAAAGAGTTTTCAACT 2512
> Ahg897524 jgi|Araly1|897524|Al_scaffold_0005_1490
Length=2259
Score = 2726 bits (1476), Expect = 0.0
Identities = 1651/1736 (95%), Gaps = 10/1736 (1%)
Strand=Plus/Plus
Query 325 AGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCGAGAATATGTT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 AGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCGAGAATATGTT 96
Query 385 AATATCTACAAGGAGGAAGAAGTGGAGAGGTCGGCAAGGTGGAGCAATTTCCTGGAATTT 444
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
Sbjct 97 AATATCTACAAGGAGGAAGAAGAGGAGAGGTCGGCCAGGTGGAACAATTTCCTGGAAGAT 156
Query 445 CATGCAGAATCTGGCGTGTCACCTACGAATGGATCGTCTGAAAATACTCATGTCAATCCa 504
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 157 CATGCAGAATCTGGCGTG-----T-CGAATGGATCGTCTGAAAATAATCATGTCAATCCA 210
Query 505 agtgaaagtgacaagaaaaaagaaaaggaattaaacaagggtgctgaaagaaaagaTCTG 564
||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 211 AGTGAAAGTGACAAGAAAATAGAAGAGGAATCAAACAAGGGTGCTGAAAGAAAAGATCTG 270
Query 565 AATGCTGACAAGCCAGGTTCTGATTTAACTCCTGGGAATGCGAGAGAGGAAGATGAAGTT 624
||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 271 AATACTGAAAAGCCAGGTTCTGATTTAAATCCTGGGAATGCGAGAGAGGAAGATGAGGTT 330
Query 625 CCCAATAG-AGAGAAGAATGTGCACAAAGTTCAGTTATGGGCTGAGATCAGGCCATCTCT 683
|||||| | |||||| |||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 331 CCCAAT-GCAGAGAAAAATGTGCACAAAGTTCTGTTGTGGGCTGAGATCAGACCATCTCT 389
Query 684 TCAAGCAATTGAGGACTTGATGAGTGTCCGTGTCAAAATGAAGGGGGATTCCACAAATGG 743
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 390 TCAAGCAATTGAGGACTTGATGAGTGTCCGTGTCAAAATAAAGGGGGATTCCACAAATGG 449
Query 744 CGAGCAAGAAGCTCAGAAATTGAATTCCTTAGCCTCAACTGATGAGACCGAGTCTTCAAA 803
||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||
Sbjct 450 CGAGCAAGAAGCTCAGAAATTGAATTCCTTACCCTCTACTGATGAGACCAAATCTTCAAA 509
Query 804 GGGAGTATGTGAGAATGATTCCGAAGACGAGTTCTATGATGCGGAGAGATCAGATCCAAT 863
|||||| | |||||||||||| ||||| ||||||||||||| ||| ||||||||||||||
Sbjct 510 GGGAGTGTCTGAGAATGATTCTGAAGATGAGTTCTATGATGTGGAAAGATCAGATCCAAT 569
Query 864 TCAGGATGGTTCTTCAGATGGCACAAGTGTCTCCAGCATGTCTGCTGCTGCTGATGCAGC 923
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 570 TCAGGATGGTTCTTCAGATAGTACAAGTGTCTCCAGCATGTCTGCTGCTGCTGATGCAAC 629
Query 924 TTCCCTAGTATCTGCATGCCCCTGGAAAGACGAACTTGAAGTTCTTATTCATGGCGGTGC 983
||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 630 TTCCCTAATATCTGCATGCCCCTGGAAGGACGAACTTGAAGTTCTTGTTCATGGCGGGGC 689
Query 984 ACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTTGCGGGAGTCAAGAAACGTCGGGT 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTTGCGGGAGTCAAGAAACGTCGGGT 749
Query 1044 CAAGAATTATTACCAAAATCTATTAGCTGCAGATAGTCTAGGAAACGACATAGAGCAGGA 1103
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 750 CAAGAATTATTACCAAAATCTGCTAGCTGCTGATAGTCTAGGAAACGACATAGAGCAGGA 809
Query 1104 GCTCATGCAGCATACAGATGAGAAAGGTTCAAGTACAGACCCCCTCTCTGTTGTGGAAAA 1163
|| |||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 810 GCACATGCAGCATGCAGATGAGAAAGGTTCAAGTACAGACCCCATCGCTGTTGTAGAAAA 869
Query 1164 ATGGAAAGGTCAGATAGAAAAGGATTTACCCCGGACATTTCCAGGTCATCCTGCCCTAGA 1223
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATGGAAAGGACAGATAGAAAAGGATTTACCCCGGACATTTCCAGGTCATCCTGCCCTAGA 929
Query 1224 TGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTC 1283
|||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 930 TGATGATTTCAGAAATGCTCTGCGGCGATTGCTAACTGCCTATGCTAGGCATAATCCCTC 989
Query 1284 TGTTGGATACTGTCAGGCAATGAATTTCTTCGCTGCACTTTTATTACTTCTGATGCCCGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TGTTGGATACTGTCAGGCAATGAATTTCTTCGCTGCACTTTTATTACTTCTGATGCCCGA 1049
Query 1344 AGAGAATGCTTTTTGGTCGCTTACAGGAATCATTGATGACTACTTCCATGATTATTATTC 1403
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGAAAATGCCTTTTGGTCGCTTATAGGAATCATTGATGACTACTTCCATGATTATTATTC 1109
Query 1404 AGAAGAGATGCTCGAGTCCCAGGTTGACCAACGAGTTCTGGAGGAGTTACTTCGAGAGAG 1463
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1110 AGAAGAGATGATCGAATCCCAGGTTGACCAACGAGTTCTGGAGGAGTTGCTTCGAGAGCG 1169
Query 1464 ATTTCCTAAATTGGTTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGG 1523
||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1170 ATTTCCTAAATTGGTTCATCATCTAGATTTTCTTGGAGTCCAGGTGGCTTGTGTTACAGG 1229
Query 1524 GCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGTTCTCAGAGTGTG 1583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GCCATGGTTTCTTTCCATCTTCATTAATATGCTTCCATGGGAAAGTGTTCTCAGAGTGTG 1289
Query 1584 GGATGTGCTTCTATTTGAAGGAAATCGTGTTATGCTTTTCAGAACAGCACTCGCATTGAT 1643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1290 GGATGTGCTTCTATTTGAAGGAAATCGTGTTATGCTTTTCAGAACAGCACTCGCATTGGT 1349
Query 1644 GGAATTTTATGGTCCTGCATTGGTTACAACCAAGGACATTGGAGATGCTGTTACTTTGCT 1703
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1350 GGAATTTTACGGTCCTGCATTGGTTACAACCAAGGACACTGGAGATGCTGTTACTTTGTT 1409
Query 1704 ACAATCAATGACTGGTTCAACATTTGATAGCAGCCAGCTCGTTTTCACTGCTTGCATGGG 1763
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ACAGTCAATGACTGGTTCAACATTTGATAGCAGCCAGCTCGTTTTCACTGCTTGCATGGG 1469
Query 1764 TTACCAAAATGTACATGAAAGTAAATTGCAGGAACTAAGAAGCAAACACAGGCCAGCAGT 1823
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1470 GTACCAAAGTGTACATGAAAGTAGATTGCAGGAACTAAGAAGCAAACACAGGCCAGCAGT 1529
Query 1824 AATAGCTGCATTTGAGGAAAGATTAAAGGGTCTTCAAGCTTGGAGGGATTCAAAAGACAC 1883
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1530 AATAGCTGCATTTGAGGAAAGATTAAAGGGGCTTCAAGCTTGGAGGGATTCAAAAGGCCC 1589
Query 1884 TGCAACCAAATTACATAATTCCAAGCAAGACCCAAATTCTGTTTTAGCTAGCAAAGCCTC 1943
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TGCGACCAAATTACATAATTCTAAGCAAGACCCAAATTCTGTTTTAGCTAGCAAAGCCTC 1649
Query 1944 ATTGTCAAATGGGAGTTTATCTCGTTCTGAATCGGGATCCAGTTATGCAGACGACATCTT 2003
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1650 ATCGTCAAATGGGAGTTTATCTCGTTCTGAATCAGGATCCAGTTATGCAGACGACGTCTT 1709
Query 2004 TATTAGCCTGACTGGGGATTGTGAGATAGATAT-TTTTCAAGATCTTCAAGGACAG 2058
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1710 TATTAGCCTGACTGGGGATGGTGAGATAGAT-TGTTTTCAAGATCTTCAAGGACAG 1764
Score = 499 bits (270), Expect = 4e-140
Identities = 449/525 (86%), Gaps = 53/525 (10%)
Strand=Plus/Plus
Query 2114 AGTTGGAGGTAGCTCTCATGGAGATGGTCAAACAAGACAATCGGCGTCAACTTAAGGCTA 2173
|||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1763 AGTTGGAGATAGCTCTCATGGAGATGGTCAAACAAGATAATCGACGTCAACTGAAGGCTA 1822
Query 2174 AGATTGAGCAGTTAGAGCAAGGGGTGACAGAGCTTCGAAGACTTGTTTCTGATAAGAGGG 2233
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1823 AGATTGAGCAGTTAGAGCAAGAGGTGACAAAGCTTCGAAGACTTGTTTCTGATAAGAGGG 1882
Query 2234 AGCAAGAAAGTG----CTATGAT-------AC-------------AGGTCTTGATGCGGA 2269
| |||||| ||| ||||||| || |||||||||||||||
Sbjct 1883 AACAAGAAGGTGCTAACTATGATACAGACCACTTGAAATTTATGAAGGTCTTGATGCGGA 1942
Query 2270 TGGAGCAAGAACATAAAGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGATGCAGCAA 2329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TGGAGCAAGAACATAAAGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGATGCAGCAG 2002
Query 2330 CGCAGAGATATGCTGCTGAAGTGCTTCAGGAAAAGTATGAAGAGGCTGTTGCAGCTCTCG 2389
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2003 CTCAGAGACATGCTGCTGAAGTGCTTCAGGAAAAGTATGAAGAAGCTGTTGCAGCGCTCG 2062
Query 2390 CGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATC 2449
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 ATGAGATGGAGAAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATC 2122
Query 2450 AATCTGGCCAAGTTAAAGCACAACCTTCACCACGGCAACTGAAGCAAGATTTGCCGGTCA 2509
||||||||||||||||||||||||||||||||||| ||| ||| | |||
Sbjct 2123 AATCTGGCCAAGTTAAAGCACAACCTTCACCACGGT--CTG--------TTT-C---TCA 2168
Query 2510 TGGTCAGTCCCTAGAATCTTATCCAAAAGACTACATATGAAAGACCTAAGGAGCAAGTTA 2569
|| || | | | ||| |||| |||||||| ||| |||||||||||||||||
Sbjct 2169 -GG-CA-T----A---T---ATC-AAAACTCTACATATCAAAAACCTAAGGAGCAAGTTA 2214
Query 2570 ACGACGAGAAGTCATCAACAGAAGGACAAA-CACAAACTTCATAG 2613
| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2215 ATGACGCGAAGTCATCAACAGAAGGACAAAACACAAACTTCATAG 2259
Score = 73.1 bits (39), Expect = 1e-11
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 205 ATGATCGCCGACGCCGTTTCTAAGTCTGACCACAAAAGG 243
|||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCGCCGACGCCGTTTCTAAGTCTGACCACAAAAGG 39
> Ahg324032 jgi|Araly1|324032|fgenesh1_pm.C_scaffold_5001576
Length=2478
Score = 1982 bits (1073), Expect = 0.0
Identities = 1841/2202 (84%), Gaps = 91/2202 (4%)
Strand=Plus/Plus
Query 325 AGGGATGCATATGGATTTTCTGTGAGGCCTCAGCATGTGCAAAGATACCGAGAATATGTT 384
|||||||||||||||||| |||| || ||||| |||||||| |||||| ||||||||| |
Sbjct 79 AGGGATGCATATGGATTTCCTGTCAGACCTCAACATGTGCAGAGATACAGAGAATATGCT 138
Query 385 AATATCTACAAGGAGGAAGAAGTGGAGAGGTCGGCA-AGGTGGAGCAATTTCCTGGAATT 443
|||| |||||||| ||||||| || ||||||| | ||||||| || |||| ||| |
Sbjct 139 GATATTTACAAGGAAGAAGAAGAAGAAAGGTCGG-ACAGGTGGAACAGTTTCTTGGTAGA 197
Query 444 TCATG-CAGAATCTGGC-GTGTCACCTACGAATGGATCGTCTGAAAATA-CTCATGTCA- 499
||||| | ||||| | | | || |||| | || ||||| |||||||||| | |||| ||
Sbjct 198 TCATGTC-GAATC-GACTGAGTTACCTGCAAACGGATCATCTGAAAATAGC-CATG-CAC 253
Query 500 -ATCCaagtgaaagtgacaagaaaaaagaaaaggaattaaacaagggtg-ctgaaagaaa 557
|| | ||||||||||| ||| ||||||||||||||||||||||||| | ||| | |
Sbjct 254 CAT-CTAGTGAAAGTGAGAAGGAAAAAGAAAAGGAATTAAACAAGGG-GCCTG---GTGA 308
Query 558 agaTCTGAATGCTGACAAGCCAGGTTCTGATTTAACTCCTGGGAATGCGAGAGAGGAAGA 617
||||||| || |||||||| |||||||||| ||||||||| ||||| || || |||||
Sbjct 309 AGATCTGCATACTGACAAGTTAGGTTCTGATGTAACTCCTGATAATGCAAGTGAAGAAGA 368
Query 618 TGAAGTTCCCAATAG-AGAGAAGAATGTGCACAAAGTTCAGTTATGGGCTGAGATCAGGC 676
| | ||| || | |||||||||||| |||| ||| || |||||| |||||||||| |
Sbjct 369 AGGACACCCCGAT-GCAGAGAAGAATGTTCACAGAGTGCAATTATGGACTGAGATCAGAC 427
Query 677 CATCTCTT-CAAGCAATTGAGGACTTGATGAGTGTCCGTGTCAA-AATGAAGGGGGA-TT 733
||||| || | | ||||||| ||||||||||| |||||||||| || |||||| || ||
Sbjct 428 CATCT-TTACGATCAATTGAAGACTTGATGAGCATCCGTGTCAAGAA-GAAGGGAGATTT 485
Query 734 -CCACAAATGGCGAGCAAGAAGCTCAGAAATTG-AAT-TCCTTAGCC-TCAACT-GATGA 788
|| |||| ||||||||| |||| |||| || ||| ||| | || || | | |||||
Sbjct 486 ATCAAAAAT--CGAGCAAGAGGCTCTGAAAGTGAAATCTCC--A-CCTTC-ATTCGATGA 539
Query 789 -GACCGAGTCTTCAAAGGGAGTATGTGAGAATGATTCCGAAGACGAGTTCTATGATGCGG 847
| || | ||| | ||||||| || |||||||||||| ||||||||||||||||||| |
Sbjct 540 TG-CCAAATCTGCCAAGGGAGCATCTGAGAATGATTCTGAAGACGAGTTCTATGATGTTG 598
Query 848 AGAGATCAGATCCAATTCAGGATGG-T--TCTTCAGATGGCACAAGTGTCTCCAGCATGT 904
|||| || ||| |||||||||| | ||||||||||| ||||||||||| |||| |
Sbjct 599 AGAGGTCGGAT---GTTCAGGATGGTTCGTCTTCAGATGGTACAAGTGTCTCTGGCAT-T 654
Query 905 -CTGCTGCTGCTGATGC-AGCTTCCCTAGTATCTGCATGCCCCTGGAAAGACGAACTTGA 962
||| |||| ||||||| || | || | | ||| |||| || ||||| || ||||||||
Sbjct 655 CCTGTTGCTCCTGATGCAAG--T-CC-ACTGTCTACATGTCCTTGGAAGGAAGAACTTGA 710
Query 963 AGTTCTTATTCATGGCGGTGCACCTATGGCTCTGAGGGGTGAGCTCTGGCAAGCATTTGC 1022
||| || |||| ||||||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 711 AGTGCTGATTCGCGGCGGTGTACCTATGGCTCTGAGGGGGGAGTTATGGCAAGCATTTGT 770
Query 1023 GGGAGTCAAGAAACGTCGGGT-CAAGAATTATTACCAAAATC-TATTAGCTGCAGATAG- 1079
||| || | |||||| | | | |||| ||||||||||||| | | || |||||||||||
Sbjct 771 GGGTGTGAGGAAACGAC-GCTGCAAGGATTATTACCAAAACCTTCTT-GCTGCAGATAGT 828
Query 1080 TCTAGGAAACGA-CATAGAGCAGGA-GCTCATGCAGCATACAGATGAGAAAGGTTCAAGT 1137
||| | |||| | ||||||||| || | | ||||||||| ||||| |||||||||| |
Sbjct 829 TCT-GTAAAC-ACCATAGAGCAAGAGGAT-ATGCAGCATGTTGATGATAAAGGTTCAATT 885
Query 1138 ACAGACCCCCTCT-CTGTTGTGGAAAAATGGAAAGGTCAGATAGAAAAGGATTTACCCCG 1196
||||| | | | |||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 886 ACAGAATCTAT-TGCTGTTGTGGAAAAATGGAAAGGACAGATAGAAAAGGACTTACCTCG 944
Query 1197 GACATTTCCAGGTCATCCTGCCCTAGATGATGAT-TTCAGAAATGCTCTGA-GGCGATTG 1254
||||||||| ||||||||||| || ||||||||| | ||||||||||| | |||| |||
Sbjct 945 GACATTTCCTGGTCATCCTGCTCTGGATGATGATGGT-AGAAATGCTCT-ACGGCGTTTG 1002
Query 1255 CTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGGCAATGAATTTCTTC 1314
|| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1003 CTTACTGCTTATGCTAGGCATAATCCTTCTGTTGGATACTGTCAGGCTATGAATTTCTTT 1062
Query 1315 GCTGCACTTTTATTACTTCTGATGCCCGAAGAGAATGCTTTTTGGTCGCTTACAGGAATC 1374
||||| |||||||| ||| ||||||| ||||| ||||| |||||| | ||||||||| |
Sbjct 1063 GCTGCGCTTTTATTGCTTTTGATGCCAGAAGAAAATGCCTTTTGGGCACTTACAGGACTT 1122
Query 1375 ATTGATGACTACTTCCATGATTATTATTCAGAAGAGATGCTCGAGTCCCAGGTTGACCAA 1434
||||||||||||||| ||| ||||||||||||||| ||| | ||||| |||||||| |||
Sbjct 1123 ATTGATGACTACTTCAATGGTTATTATTCAGAAGAAATGATAGAGTCTCAGGTTGATCAA 1182
Query 1435 CGAGTTCTGGAGGAGTTACTTCGAGAGAGATTTCCTAAATTGGTTCATCATCTAGATTAT 1494
| |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1183 CTAGTTCTGGAGGAGTTAGTTCGAGAAAGATTTCCTAAATTGGTTCATCATCTGGATTAT 1242
Query 1495 CTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATG 1554
||||||||||| |||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 1243 CTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATG 1302
Query 1555 CTTCCATGGGAAAGTGTTCTCAGAGTGTGGGATGTGCTTCTATTTGAAGGAAATCGTGTT 1614
|||||||||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||
Sbjct 1303 CTTCCATGGGAAAGTGTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAGGGAACTCGTGTT 1362
Query 1615 ATGCTTTTCAGAACAGCACTCGCATTGATGGAATTTTATGGTCCTGCATTGGTTACAACC 1674
|||||||||||||| |||||||||||||||||| | |||||||||||||| ||||| ||
Sbjct 1363 ATGCTTTTCAGAACTGCACTCGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACG 1422
Query 1675 AAGGACATTGGAGATGCTGTTACTTTGCTACAATCAATGACTGGTTCAACATTTGATAGC 1734
||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1423 AAGGATGCTGGAGACGCTGTTACTTTGCTACAATCACTGACTGGATCAACATTTGATAGC 1482
Query 1735 AGCCAGCTCGTTTTCACTGCTTGCATGGGTTACCAAAATGTACATGAAAGTAAATTGCAG 1794
|||||||| ||||| ||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 1483 AGCCAGCTAGTTTTAACTGCTTGCATGGGTTACCAAAATGTACACGAAATTAGATTGCAG 1542
Query 1795 GAACTAAGAAGCAAACACAGGCCAGCAGTAATAGCTGCATTTGAGGAAAGATTAAAGGGT 1854
||| | ||||||| || |||||||| || ||||||||| |||| ||||||| ||||||
Sbjct 1543 GAATTGCGAAGCAAGCATAGGCCAGCTGTGATAGCTGCACTTGAAGAAAGATCAAAGGGG 1602
Query 1855 CTTCAAGCTTGGAGGGATTCAAAAGACACT-GCAACCAAATTACATAATTCCAAGCAAGA 1913
|||||||||||||||||||| || | | || || |||||||| |||||| ||||||||
Sbjct 1603 CTTCAAGCTTGGAGGGATTCTAAGGGC-CTTGCCTCCAAATTATATAATTTTAAGCAAGA 1661
Query 1914 CCCAAATTCTGTT-T--TAGCTAGCAAAGCCTCATTGTCAAATGGGAGTTTATCTCGTTC 1970
|||||| |||||| | | | | | |||| ||||||||||||||||||||| ||||| ||
Sbjct 1662 CCCAAAATCTGTTCTGGTGGATGGAAAAGTCTCATTGTCAAATGGGAGTTTGTCTCGATC 1721
Query 1971 TGAATCGGGATCCAGTTATGCAGACGACA-TCTTTATTAGCCTGACTGGGGATTGTGAGA 2029
||| || ||||| ||| |||| || || | | || ||||||| ||||||||| | |||
Sbjct 1722 TGAGTCAGGATCAAGTAATGCTGATGA-AGTGTTGGTTAGCCTAACTGGGGATGGGGAGG 1780
Query 2030 TAGATATTT-TTCAAGATCTTCAAG-GACAGGGTGAACTCCACAAGTTGCTTCAGGAGAA 2087
||||| | | ||||||||||||||| | |||| ||||||| |||||||||| |||||||
Sbjct 1781 TAGAT-TCTGTTCAAGATCTTCAAGCG-CAGGCTGAACTCTGCAAGTTGCTTGAGGAGAA 1838
Query 2088 AAGATCTGCTTTACTAAGAGCTGAAGAGTTGGAGGTAGCTCTCATGGAGATGGTCAAAC- 2146
| |||| ||| |||| |||||||||||||||||| | |||||||||||||| || |||
Sbjct 1839 ACGATCAGCTCTACTTAGAGCTGAAGAGTTGGAGATTGCTCTCATGGAGATAGT-AAAGG 1897
Query 2147 AAGACAATCGGCGTCAACTTAAG-GCTAAGATTGAGCAGTTAGAGCAAGGGGTGACAGA- 2204
||||||||||||||||| || || || ||| | || ||||||||||||| | || | ||
Sbjct 1898 AAGACAATCGGCGTCAA-TTGAGTGCCAAGGTCGAACAGTTAGAGCAAGAGATGGCCGAA 1956
Query 2205 GCTTC-GAAGACTTGTTTCTGATAAG-AGGGAGCAAGAAAGTGCTATGATACAGGTCTTG 2262
| ||| || |||| | ||||||||| ||| | |||||| |||| ||| |||||||||||
Sbjct 1957 G-TTCAGA-GACTCCTCTCTGATAAGCAGGAA-CAAGAAGGTGCAATGCTACAGGTCTTG 2013
Query 2263 ATGCGGATGGAGCAAGAACATAAAGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGAT 2322
|||||| ||||||||||||| || ||||||||||||||||| ||| ||||||||||||||
Sbjct 2014 ATGCGGGTGGAGCAAGAACAGAAGGTAACAGAAGATGCACGAAGATTTGCTGAGCAGGAT 2073
Query 2323 GCAGCAA-CGCAGAGATATGCTGCTGAAGTGCTT-CAGGAAAAGTATGAAGAGGCTGTTG 2380
|||| || ||||||||||||||||| |||| ||| |||||||| || || || |||||||
Sbjct 2074 GCAG-AAGCGCAGAGATATGCTGCTCAAGT-CTTGCAGGAAAAATACGAGGAAGCTGTTG 2131
Query 2381 CAGCTCTCGCGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTT 2440
| || || || || |||||| |||| ||||| ||||||||||||||| | ||||||||||
Sbjct 2132 CTGCACTGGCTGAAATGGAGAAGAGAGCAGTGATGGCAGAGTCCATGCTCGAGGCGACTT 2191
Query 2441 TGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCAC 2482
|||||||||||||||| ||| | |||||||||||||||||||
Sbjct 2192 TGCAGTATCAATCTGGGCAACTCAAAGCACAACCTTCACCAC 2233
> Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1
Length=1176
Score = 226 bits (122), Expect = 7e-58
Identities = 138/145 (95%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 2705 GAATTACATAATTTCTTTGGTAAGCATATATAAACAATTCGTTGTAAGTCAAACCTCTG- 2763
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1176 GAATTACATAATTTTTTTGGTAAGCATATAGAAACAATTCGTTGTAAGTCAAACCTCTGT 1117
Query 2764 -T-TATGACAAAGAGTTTTCAACTATCTATAGTGGACCAGAAGCCACAAAGAAACTTCAC 2821
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1116 TTGTATGACAAAGAGTTTTCAACTATCTATAGTGGACCAGAATCCACAAAGAAACTTTAC 1057
Query 2822 TATATAATATATGCATCAAATAACC 2846
|||||||||||||||||||||||||
Sbjct 1056 TATATAATATATGCATCAAATAACC 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107414490900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5