BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39290.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901854 jgi|Araly1|901854|Al_scaffold_0004_2504 1513 0.0
Ahg485066 jgi|Araly1|485066|fgenesh2_kg.5__1058__AT2G39290.1 1070 0.0
Ahg938432 jgi|Araly1|938432|scaffold_502623.1 593 7e-169
> Ahg901854 jgi|Araly1|901854|Al_scaffold_0004_2504
Length=891
Score = 1513 bits (819), Expect = 0.0
Identities = 867/891 (97%), Gaps = 0/891 (0%)
Strand=Plus/Plus
Query 36 ATGCTCAGATCCGGTCTGGCTTCGTTAATCGTCGATGTCAATTTGCGGCGCACGTTACGT 95
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTCAGATCCGGTCTCGCTTCGTTAATCGTCGATGTCAATTTGCGGCGCACGTTACGT 60
Query 96 CCATCCCCAACCTTTTCTTTTCCGGCGCATCTTAGCCGTTGCATTATCACTTCCCGTTAC 155
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CCATCTCCAACCTTTTCTTTTCCGGCGCATCTTAGCCGCTGCATTATCACTTCCCGTTAC 120
Query 156 TCCTCCCGTACATCTCTAAGGTTTCCGATTCAAATATCTCGCCACCAACACCGTCTATCC 215
|||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| || |||
Sbjct 121 TCCTCCCGTACAGCTCTAAGGTTTCCAATTCGAATATCTCGCCACCACCACCGCCTTTCC 180
Query 216 TACTTTTCTTCATCCTCTTCGTCGGAGCAAAGCAGACCAACTTCCTCTTCCCGAAACAGT 275
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TGCTTTTCTTCATCCTCTTCGTCGGAGCAAGGCAGACCAACTTCCTCTTCCCGAAACAGT 240
Query 276 TTCAGTGGTCACGGTCAGCTTGATAGTGATGATAATTCTTCACCGCCTCCGTCGCAATCA 335
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 241 TTCAGTGGTCACGGTCAGCTTGATGGTGACGACAATTCTTCACCGCCTCCGTCGCAATCA 300
Query 336 TCTTCCAAAGTTCTTACATTGCCTACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 395
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCG 360
Query 396 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATT 420
Query 456 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTA 480
Query 516 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCTGATAAGCTTATGGTTGCAGCTACA 575
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 481 GGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGCTTATGGTCGCAGCTACA 540
Query 576 TTGATTTTACTGTGTACAAAACCTATCCAAGTTGCTGAATTAGGACCACTTCCATGGTTA 635
||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 541 TTGATCTTACTGTGTACAAAACCTATCGAAGTTGCTGAATTAGGACCAGTTCCATGGTTA 600
Query 636 TTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTAAGAGAA 695
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 601 TTGACCGTACCTTCTATTGCAATCATTGGTAGAGAGATTACTATGTCAGCAGTAAGAGAA 660
Query 696 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAG 720
Query 756 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAAT 780
Query 816 GTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCTGTT 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCGGTT 840
Query 876 TGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAG 926
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAG 891
> Ahg485066 jgi|Araly1|485066|fgenesh2_kg.5__1058__AT2G39290.1
Length=1221
Score = 1070 bits (579), Expect = 0.0
Identities = 620/640 (97%), Gaps = 2/640 (0%)
Strand=Plus/Plus
Query 571 CTACATTGATTTTACTGTGTACAAAACCTATCCA-AGTTGCTGAATTAGGACCACTTCCA 629
|||||||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 583 CTACATTGATCTTACTGTGTACAAAACCTATCGACA-TTGCTGAATTAGGACCAGTTCCA 641
Query 630 TGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 642 TGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCAGCAGTA 701
Query 690 AGAGAATGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTG 749
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 702 AGAGAATGGGCTGCATCTCAAAATGGGAAGCTGTTAGAGGCAGTTGCTGTAAATAACTTG 761
Query 750 GGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGAT 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 762 GGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGGGAT 821
Query 810 AGCAATGTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGCAATGTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTA 881
Query 870 TCTGTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAGTAT 929
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCAGTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAGTAT 941
Query 930 TAGTAGTAGTAATTCATCTATTGGTTTTGTTTTGCTTTGACCTGCATTTGGATTTATGTA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 942 TAGTAGTAGTAATTCATCTATTGGTTTTGTTTTGCTTTGACCTGCATTTGGATATATGTA 1001
Query 990 TTGATGGAAAGGGTCTCAGTCATCGCCTGTACAAGAGCACAAAACTTGAATGCTGCAACA 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1002 TTGATGGAAAGGGTCTCAGTCATCGCCTGTACAAGAGCACAAAACTTGAATGCTACAACA 1061
Query 1050 TTTAAGTAGTTTGAGAATATGTAGATGATTTTGCTTTGCACTTTTCCAACACAATATAGA 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTAAGTAGTTTGAGAATATGTAGATGATTTTGCTTTGCACTTTTCCAACACAATATAGA 1121
Query 1110 GTGTGCAACATAGTCTTGGTTGAGATTAAAGCCTTATAATGAGTGTATTGTATAAACGAT 1169
|||||||| ||||||||| | ||||||||||||| |||||||||||||| |||||||| |
Sbjct 1122 GTGTGCAAAATAGTCTTGATCGAGATTAAAGCCTAATAATGAGTGTATTCTATAAACGCT 1181
Query 1170 GAATACGTATTTCCAACATATGGAACAAACATTCTTTATT 1209
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1182 GAATACGTATTTCCAACTTATGGAACAAACATTCTTTATT 1221
Score = 835 bits (452), Expect = 0.0
Identities = 524/556 (94%), Gaps = 15/556 (3%)
Strand=Plus/Plus
Query 3 AAATCGAAGCGATCCAAATTAGTAAGCTCGCCCATGCTCAGATCCGGTCTGGCTTCGTTA 62
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 AAATCGAAGCGATCCAAAATAGT-AGCTCGCCCATGCTCAGATCCGGTCTCGCTTCGTTA 59
Query 63 ATCGTCGATGTCAATTTGCGGCGCACGTTACGTCCATCCCCAACCTTTTCTTTTCCGGCG 122
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 ATCGTCGATGTCAATTTGCGGCGCACGTTACGTCCATCCCCAACTTTTTCTTTTCCGGCG 119
Query 123 CATCTTAGCCGTTGCATTATCACTTCCCGTTACTCCTCCCGTACATCTCTAAGGTTTCCG 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATCTTAGCCGCTGCATTATCACTTCCCGTTACTCCTCCCGTACATCTCTAAGGTTTCCG 179
Query 183 ATTCAAATATCTCGCCACCAACACCGTC-TATCCTACTTTTCTTCATCCTCTTCGTCGGA 241
|| |||||| | ||||| | | |||| ||||||||||||||||||||||||
Sbjct 180 --------AT-TCGCCA-C--CACCG-CATTTCCTGCTTTTCTTCATCCTCTTCGTCGGA 226
Query 242 GCAAAGCAGACCAACTTCCTCTTCCCGAAACAGTTTCAGTGGTCACGGTCAGCTTGATAG 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 227 GCAAAGCAGACCAACTTCCTCTTCCCGAAACAGTTTCAGTGGTCACGGTCAGCTTGATGG 286
Query 302 TGATGATAATTCTTCACCGCCTCCGTCGCAATCATCTTCCAAAGTTCTTACATTGCCTAC 361
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 287 TGATGGCAATTCTTCACCGCCTCCGTCGCAATCATCTTCCAAAGTTCTTACATTACCCAC 346
Query 362 CGTATTAACACTTGGTCGTGTCGCCGCCGTCCCGCTTCTCGTCGCAACCTTTTACGTTGA 421
||||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 347 CGTATTAACACTTGGCCGTGTAGCAGCCGTCCCACTTCTCGTCGCAACCTTTTATGTTGA 406
Query 422 TAGTTGGTGGGGAACAACTGCTACAACAAGCATTTTCATTGCAGCAGCCATTACAGACTG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TAGTTGGTGGGGAACAACTGCTACAACAAGCATTTTCATTGCAGCAGCCATTACAGACTG 466
Query 482 GCTTGACGGCTATCTTGCCCGCAAGATGAGGTTAGGTTCTGCGTTTGGTGCCTTTTTGGA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GCTTGACGGCTATCTTGCCCGCAAGATGAGGTTAGGTTCTGCGTTTGGTGCCTTTTTGGA 526
Query 542 TCCAGTTGCTGATAAG 557
||||||||| ||||||
Sbjct 527 TCCAGTTGCAGATAAG 542
> Ahg938432 jgi|Araly1|938432|scaffold_502623.1
Length=743
Score = 593 bits (321), Expect = 7e-169
Identities = 497/584 (85%), Gaps = 4/584 (1%)
Strand=Plus/Plus
Query 335 ATCTTCCAAAGTTCTTACATTGCCTACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCC 394
|||||| ||||| |||||||||||||||||||||| || || ||||| || ||||| ||
Sbjct 128 ATCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTAGGCCGTGTAGCTGCCGTTCC 187
Query 395 GCTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCAT 454
| |||||||||| ||||||||||||||| | |||||||||| ||||||||||||||| ||
Sbjct 188 GATTCTCGTCGCGACCTTTTACGTTGATTGCTGGTGGGGAAAAACTGCTACAACAAGTAT 247
Query 455 TTTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTT 514
||| |||||||||||||| ||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 248 TTTTATTGCAGCAGCCATCACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATT 307
Query 515 AGGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCTGATAAGCTTATGGTTGCAGCTAC 574
||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||||
Sbjct 308 AGGTTCTGCATTTGGTGCTTTTTTGGATCCAGTGGCGGATAAGCTTATGGTAGCAGCTAC 367
Query 575 ATTGATTTTACTGTGTACAAAACCTATCCAAGTTGCTGAATTAGGACCACTTCCATGGTT 634
|||||| || |||| || ||||| || | | || ||||||||| ||||||||||
Sbjct 368 ATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTTCCATGGTT 427
Query 635 ATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTAAGAGA 694
| |||| |||||||| || || ||||||||||| |||||||||||||| |||||||||||
Sbjct 428 AGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCAGTAAGAGA 487
Query 695 ATGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAA 754
|||||||||||||||||| || ||||||| |||||| ||||||||||||| |||||| ||
Sbjct 488 ATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGCTTGGGAAA 547
Query 755 GTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAA 814
|||||||||||| |||||||||| ||| ||||| |||||||||||||||| |||||||
Sbjct 548 GTGGAAAACCGCAACGCAGATGATAGCGTTAACCTTACTTCTTGCAAGCCGGGATAGCAG 607
Query 815 TGTTG-GATGGCTCGTAGCTTCAGGTGCT-GGCTTGCTTTATGTATCAGCAGGACTATCT 872
| ||| || | || || | || ||| | || ||||| |||||||| ||||| || |||
Sbjct 608 TTTTGAGA-GACTATTACCGTCGGGTATTTGG-TTGCTCTATGTATCCGCAGGGCTCTCT 665
Query 873 GTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACT 916
| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 666 ATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5