BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39300.1
Length=2570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482949 jgi|Araly1|482949|fgenesh2_kg.4__2009__AT2G39300.1 2747 0.0
Ahg485925 jgi|Araly1|485925|fgenesh2_kg.5__1917__AT3G55060.1 702 0.0
> Ahg482949 jgi|Araly1|482949|fgenesh2_kg.4__2009__AT2G39300.1
Length=2358
Score = 2747 bits (1487), Expect = 0.0
Identities = 1884/2062 (91%), Gaps = 81/2062 (4%)
Strand=Plus/Plus
Query 57 ATGAAGAAGCTTTTCTTTTTCAAGTCATCATCTGGTAATGGAACTGATCATAATAAACAG 116
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAAGAAGCTTTTCTTTTTCAAATCATCATCTGGTTATGGAACTGATCATAATAAACAG 60
Query 117 CTTCACAAGCAAAAAGATGATCACTTTCAACGATATTTGAATAGTCCAAAGGGTCTTAAC 176
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 61 CTTCACAAGCAAAAAGATGATCAGTTTCAACGAAATTTGAATAGTCCAAAGGGTTTTAAC 120
Query 177 AAGTCTCAGAGTGAAGTATCTGGAGCTGCTCTTAGACGAAGCCGTTCTTTGTCCTCTGCT 236
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTCTCAGAGTGAAGTATCTGGTGCTGCTCTTAGACGAAGCCGTTCTTTGTCCTCTGCA 180
Query 237 GCTTTTGTCATTGATGGAACTTCTTC--A--A----A-T-----CAG-------CATCGA 275
||||||||| |||||||||||||||| | | | | ||| ||||||
Sbjct 181 GCTTTTGTCGTTGATGGAACTTCTTCAAATGATGCTACTAGAACCAGCCAACATCATCGA 240
Query 276 CTGCGGAATCATTCGTCACGATGTTTAACTCCGGAAAGACAATTTAAAGAATATGGAAGT 335
||||| ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 241 CTGCGAAATCATTCGTCGCGATGTTTTACTCCGGAAAGACAACTTAAAGAATCTGGAAGT 300
Query 336 ATGTCAACA-TGTTCTAGCAATGTCTCGAGTCAAGTCTTGGATCGTTACATTGATGGAGA 394
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTCAA-ATTGTTCTAGTAATGTCTCGAGTCAAGTCTTGGATCGTTACATTGATGGAGA 359
Query 395 AGAGCATTTAGAACGGAGTAAGCAAAAGAGCGGTTCTTTGCATAGTAGTAGTCTCTCTGG 454
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 360 AGAGCATTTAGAACGGAGTAAGCAAAAGAGCGGTTCTTCG-A-A-TAGTAGTCTCTCTGG 416
Query 455 GAGTAGAAGGAGGCTTCCACCGCGAGCTCAATCTCCTTCACCGTTATCAGAGAGTGGCAA 514
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 417 GAGTAGAAGGAGGCTTCCACCGCGAGCTCAATCCCCTTCACCGTTATCAGATAGTGGCAA 476
Query 515 AGATAAACGGAAGTCTAAAGGTTTGAGGGATGCATCAGCTCGTTCACTTGCAAGAAGTGT 574
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 477 AGATAAACGGAAATCTAAAGGTTTGAGGGATGAATCGGCTCGTTCACTTGCAAGAAGTGT 536
Query 575 TATTGAAAGACTCTCTCATAATACTCAGGGCAAGTCGAAGGCTTTGAGTTATGAGCCCAT 634
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 537 CATTGAGAGACTCTCTCATAATACTCAGGGCAAGTCAAAGGCGTTGAGTTATGAGCCCAT 596
Query 635 CAGAATACAAGA----TGT--T--T-G---C---GGTAAAATTCTTGACTCAAACTCGGA 679
|||||||||||| ||| | | | | ||||||| |||||||||||| || ||
Sbjct 597 CAGAATACAAGATGTCTGTGGTGGTGGATACAATGGTAAAACTCTTGACTCAAATTCTGA 656
Query 680 TGTTTTGGCTAATGTTGTTGTTCCTTTGACTGAAGAATATGAACCTGTGAATGAATATTA 739
|||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 657 TGTTTTGGCTAATGTTGTTGTTCCACTGATTGAAGAATATGAACCAGTGAATGAATATTA 716
Query 740 TCCGGACGACCAAACAGAGCTGCAGTACCAACAGTTTTTCTTACATGGGAAGGACATGTG 799
| |||| ||||||||||| ||| ||||||||||||| |||||||| |||||||||||
Sbjct 717 TGCGGATGACCAAACAGA---ACAGCACCAACAGTTTTTATTACATGGTAAGGACATGTG 773
Query 800 TA-AGGAA--GA-------C-----G-A-----TGTTAGTTCAGAGCTGGAAAAG-AGAT 837
|| |||| || | | | ||||||||| ||||| | |||| ||||
Sbjct 774 TATGGGAACTGATGGTGTTCGTAAGGAAGGTGGTGTTAGTTCGGAGCTAG-AAAGAAGAT 832
Query 838 ATAAAGAAGCTGAGAAGAGAGTGAAGTTGCTTTCTGAAGAAATGGAGGAGAAGAAGTTTC 897
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 833 ATAAAGAAGCTGAGAAGAGAGTGAAGTTGCTTTCTGAAGAACTGGAGGAAAAGAAGTTTC 892
Query 898 TTTCAGATTGTGATTTCGATATTTCATCTTTGGTTGGAGATATTAGACAAATGGAAGAAG 957
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 893 TTTCAGACTGTGATTTCGATATTTCATCTTTGGTGGGAGATATTAGACAAATGGAAGAAG 952
Query 958 AGAGGGTAGGCTTAGCTTTTGAGGTTTTAAGTCTTTT-ACGGTCACAAATGGATGAGAGG 1016
||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 953 AGAGGGTAGGCTTGGCTTTTGAAGTTTTAAGTCTTTTGA-GGTCACAAATGGATGAGAGG 1011
Query 1017 GCTTCTACTAGGGAAGATATCAGACGGGTAAAGAATGATTGGGACTTGCTTTTAAAGCGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1012 GCTTCTACTAGGGAAGATATCAGACGGGTAAAGAATGATTGGGACTTGCATATAAAGCGA 1071
Query 1077 CTAGAAAAAGAGAAGACTGAGTTACAAGTTCAGTTAGAGACAGAGCTTGATAGAAGGTCA 1136
||||||| ||| |||| ||||||||||| | |||| |||| |||||||||||||||||||
Sbjct 1072 CTAGAAAGAGACAAGAGTGAGTTACAAGCTGAGTTGGAGAAAGAGCTTGATAGAAGGTCA 1131
Query 1137 AGTGAGTGGACTTCGAAGGTCGAGAGTTTCAAGGTGGAGGAGAAAAGGCTGAGGGAACGT 1196
||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 AGTGAGTGGACTTTAAAGATCGAGAGTTTCAAGGTGGAGGAGAAGCGGCTGAGGGAACGT 1191
Query 1197 GTCAGAGAGCTTGCTGAGCATAATGTCTCACTCCAGAGAGAAATATCGACCTTTCATGAA 1256
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1192 GTCAGAGAGCTTGCTGAGCATAATGTCTCACTGCAGAGAGAAATATCGACGTTTCATGAA 1251
Query 1257 AAGGAAACTGAGCGTATCGATATGATAAGACATTTGGATGAAACAGTTACGGAGTTGAGT 1316
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 1252 AAGGAAACTGAGCGTATCGATATGATAAGACATTTGGATGAAGCAGTTGCGGAGTTAAGT 1311
Query 1317 GCAACAGCAGAGGAAATGCGTGAAGAAAATTTGTTTCTTATGCAAAATCTCTCCAAGTTA 1376
|||||||||||||||| ||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct 1312 GCAACAGCAGAGGAAACGCGCGAAGAAAACTTGTATCTTATGCAAAACCTCTCCAAGTTA 1371
Query 1377 CAAGAGAGTTACACTGGTAGTACCGATGATCTTGATTACGTAAGAAGAAACTTTGAAGAG 1436
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1372 CAAGAAAGTTACACTGGTAGTACCGATGATCTTGATTGCGTAAGAAGAAACTTTGAAGAG 1431
Query 1437 AAAGACATGGAATGCAAGGAGTTACATAAATCTGTTACAAGACTTCTAAGAACTTGCAAA 1496
||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1432 AAAGATATGGAATGCAAGGAGTTACACAAATCTGTTACAAGATTTCTAAGAACCTGCAAA 1491
Query 1497 GAACAAGAGAAGACAATCCAGGGACTTAGAGATGGTTTCTCCGAGGAAATTAAGAAGCAA 1556
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1492 GAACAAGAGAAGACAATCCAGGGACTTAGAGATGGTTTCTCTGAGGAAATTAAGAAGCAA 1551
Query 1557 CC-TTCAGAGCATGTGGACAAGAAGCTTCAAATGGAACAACTAAGGTTGGTAGGAGTTGA 1615
|| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1552 CCGAT-AGAGCATGTGGACAAGAAGCTTCAGATGGAACAAATAAGGTTGGTAGGAGTTGA 1610
Query 1616 ATTGTCACTGAGAAAGGAGGTAGAATCAATGAAGCTCGAAGCTGAAT-CTCTTCGTCGTG 1674
||||||||| |||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 1611 ATTGTCACTTAGAAAGGAGGTAGAATCAATGAAGCTCGAATTTG-ATGCTCTTTGTCGTG 1669
Query 1675 AGAATAACTGTCTGCTGAATCGTGTAAAAGGAAATGGAGAAGAAGCTGACATTATGACGA 1734
||||||||| |||||||||||| |||||||||||||||||||||||| ||| | | ||||
Sbjct 1670 AGAATAACTCTCTGCTGAATCGAGTAAAAGGAAATGGAGAAGAAGCTTACA-T-T-ACGA 1726
Query 1735 CCTTCAAGCTAGATAATGAAATGAAGATGCGTGTATGTCACTTGCAAGACCAAGGTATAT 1794
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1727 CCTTCAAGCTAGATAATGAGATGAAGATGCGTGTATGCCACTTGCAAGACCAAGGTATAT 1786
Query 1795 CAATGTTAAATGAGAGTACTCAGCTATGTTACAAGTTTCTGAAAATCATCAAAGAGAAAT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CAATGTTAAATGAGAGTACTCAGCTATGTTACAAGTTTCTGAAAATCATCAAAGAGAAAT 1846
Query 1855 CAGTGAATAGTGG-TTGGAGTGAGCAGTTTCTGATTGAATCTGAGATGAGGGTTCATGGA 1913
||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1847 CAGTGAATAATGGATTG-AGTGAGCAGTTTCTGATTGAATCTGAGATGAGAGTTCATGGA 1905
Query 1914 ATAAGACGTGGAACTGAAAGCCTGAAGAGGAGTTTGCAGACAGTAACAAGTTTATTGCTT 1973
||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1906 ATACGGCGTGGAACTGAAAGCCTGAAGAGGAGTTTGCAGACAGTAACAAGTTTGTTGCAT 1965
Query 1974 GAAAAATCCAATGAGATG--G-CATCAAATTCAGAATCATCTTGCTCAAGTGCTGCTAGG 2030
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GAAAAATCCAATGAGATGATGGCATCAAATTCAGAATCATCTTGCTCAAGTGCTGCTAGG 2025
Query 2031 CCTAGCAGCCGCTCAGTGGAAA 2052
|||||||||| ||||| |||||
Sbjct 2026 CCTAGCAGCCACTCAGGGGAAA 2047
Score = 527 bits (285), Expect = 2e-148
Identities = 304/313 (97%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 2259 ATGGTGAAGAAGGACGAGAACATAAACCGGATGGAAATCAATCTTCAAGAAGCTGCTAAA 2318
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 2047 ATGGTGAAGAAGGACGAGAACATAAACCGGCTTGAAATCAATCTCCAAGAAGCTGCTAAA 2106
Query 2319 GAAT-TGCTTACATTACCAAAAGTGTTGGAGGAAAGAGAAGAGATGTGGAAGGAAGTGAA 2377
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 GACTCTG-TTACATTACCAAAAGTGTTGGAGGAAAGAGAAGAGATGTGGAAGGAAGTGAA 2165
Query 2378 GGAATGCAGAAAGAGAAACATGGATTTGGAGTCAGAGAAGGAGATGTTGAAGAAAAAGGT 2437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 GGAATGCAGAAAGAGAAACATGGATTTGGAGTCAGAGAAGGAGATGTTGAAGAAAAAGGT 2225
Query 2438 AGAGAAACTTGAAGAGGACACACTCTTTAAGGAAGGTCAGATCACGATACTAAAAGACAC 2497
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 AGAGAAACTGGAAGAGGACACACTCTTTAAGGAAGGTCAGATCACGATACTAAAAGACAC 2285
Query 2498 GCTTGGAAGCAGACATTTTGATCTTCTTCTCTCCAGTCCTGAGTTCTCATATAATGATTT 2557
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 ACTTGGAAGCAGACATTTGGATCTTCTTCTCTCCAGTCCTGAGTTCTCATATAATGATTT 2345
Query 2558 CTTAGTCCAATAA 2570
|||||||||||||
Sbjct 2346 CTTAGTCCAATAA 2358
> Ahg485925 jgi|Araly1|485925|fgenesh2_kg.5__1917__AT3G55060.1
Length=3052
Score = 702 bits (380), Expect = 0.0
Identities = 865/1092 (79%), Gaps = 62/1092 (6%)
Strand=Plus/Plus
Query 797 GTGTAAGGAAGACGATGTTAG-TTCAGAGCTGGAAAAG-AGATATAAAGAAGCTGAGAAG 854
||||| |||||||||| || | || ||||| |||| | | || |||||| |||||||||
Sbjct 1058 GTGTATGGAAGACGATATT-GACTCCGAGCTAGAAATGAAAAT-TAAAGACGCTGAGAAG 1115
Query 855 AGAGTGAAGTTGCTTTCTGAAGAAATGGAGGAGAAGAAG-TTTCTTTCAGATTGTGATTT 913
|||| || ||| |||||| |||| ||||| || || || | |||||||| ||||| ||
Sbjct 1116 AGAGCAAAATTGTTTTCTGCAGAATTGGAGCAGCAG-AGATGCCTTTCAGACTGTGACTT 1174
Query 914 CGATATTTCATCTTTGGTTGGAG-ATATTAGACAAA-TGGAAGAAGAGAGGGTAGGCTTA 971
|||| ||||||||||||| || | | |||||| ||| ||||||| |||||| | |||
Sbjct 1175 CGATGTTTCATCTTTGGTCGGGGCA-ATTAGA-AAACTGGAAGATGAGAGGCTCCACTTG 1232
Query 972 GCTTTTGAGGTTTTAAGTCTTTTACGGTCACAAATGGATGAGAGGGCTTCTACTAGGGAA 1031
|| |||||| | ||| ||| |||||||| ||||||| ||||||||||||| | ||||||
Sbjct 1233 GCATTTGAGAATGTAAATCTCTTACGGTCCCAAATGGTTGAGAGGGCTTCTGCCAGGGAA 1292
Query 1032 GATATCAGACGGGTAAAG-AATGATTGGGACTTGCTTTTAAAGCGACTAGAAAAAGAGAA 1090
|| |||||| || | ||| | ||||||||||||| | || || |||||||||| |||||
Sbjct 1293 GAAATCAGATGGTTGAAGTCA-GATTGGGACTTGCATATACAGAGACTAGAAAAGGAGAA 1351
Query 1091 GA-CTGAGTTACAAG-TTCAGTTAGAGACAGAGCTTGATAGAAGGTCAAGTGAGTGGACT 1148
|| | ||||| || | | | || |||| ||||||||||||||| ||| ||||||||||
Sbjct 1352 GAGC-GAGTTGCAGGCTGGA-TTGGAGAAAGAGCTTGATAGAAGATCAGGTGAGTGGACG 1409
Query 1149 TCGAAGGTCGAGAGTTTCAAGGTGGAGGAGAA-AAGGCTGAGGGAACGTGTCAGAGAGCT 1207
|||||| |||| | ||| || | || ||||| || || | || ||||||||||||||
Sbjct 1410 TCGAAGCTCGAAAAATTCCAGCTTGAAGAGAAGAA-ACTCCGAGAGCGTGTCAGAGAGCT 1468
Query 1208 TGCTGAGCATAATGTCTCACTCCAGAGAGAAATATCGACCTTTCATGAAAAGGAAACTGA 1267
||||||||||||||||||||||||||| ||| ||||| | |||||||| || || || ||
Sbjct 1469 TGCTGAGCATAATGTCTCACTCCAGAGGGAACTATCGGCTTTTCATGAGAATGAGACAGA 1528
Query 1268 GCGTATCGATATGATAAGACATTTGGATGAAACAGTTACGGAGTTGAGTGCAACAGCAGA 1327
| | || ||||||| ||||||||| | || |||| | ||| ||| || ||||||||
Sbjct 1529 GAACAAAGACATGATAACACATTTGGAGGGAAGAGTTGCTGAGCTGACCGCGACAGCAGA 1588
Query 1328 GGAAATGCGTGAAGA-AA-ATTTGTTTCTTATGCAAAATCTCTCCAAGTTACAAGAGAGT 1385
||| ||| |||||| || | || | | | | |||| ||||||| ||||||||||||||
Sbjct 1589 TGAATTGCATGAAGAGAACACTTATGT-TAAA-CAAACTCTCTCCCAGTTACAAGAGAGT 1646
Query 1386 TAC-ACTGGTAG-TACCGATGATCTTGATTACGTAAGAAGAAACTTTGAAGAGAAAGA-C 1442
|| | ||| | ||| || |||||||||| | |||||||||||||||||||||| || |
Sbjct 1647 TATGAA-GGT-GCTACAGAAGATCTTGATTTCCTAAGAAGAAACTTTGAAGAGAAGGATC 1704
Query 1443 ATGGAATGCAAGGAGTTACATAAATCTGTTACAAGACTT-CTAAGAACTTGCAAAGAACA 1501
| | |||||| |||||| || ||||||||||||| | || || |||||||||||||||||
Sbjct 1705 AAG-AATGCAGGGAGTTGCACAAATCTGTTACAA-AGTTTCTCAGAACTTGCAAAGAACA 1762
Query 1502 AGAGAAGACAATCCAGGGACTTAGAGATGGT-TTCTCCGAGGAAATTAAGAAGCAACCTT 1560
|| |||||||||| |||||||| |||||||| || |||||||| |||||||||||| |
Sbjct 1763 AGGGAAGACAATCGAGGGACTTCGAGATGGTGTT-TCCGAGGAGGGTAAGAAGCAACCGT 1821
Query 1561 CAGAGCA-T--G-----T-GGACAAGAAGCTT-CAAATGGAACA-ACTAAGGTTGGTAGG 1609
||||| | | | | || |||||| || || | || || | |||||||| |||
Sbjct 1822 CAGAGAAATTAGACCAGTTGGTCAAGAAA-TTGCAGGTCGAGCAGA-TAAGGTTGACAGG 1879
Query 1610 AGTT-GAA-TTGTCACTGAGAAAGGAGGTAGAATCAATGAAGCTCGAAGCTGAATCTCTT 1667
| | || || ||||| |||| ||| ||||||||||||||||| ||| |||| ||||||
Sbjct 1880 -GATCGAGCTT-TCACTTAGAAGGGAAGTAGAATCAATGAAGCTTGAAACTGACTCTCTT 1937
Query 1668 CGTCGTGAGAATAACTGTCTGCTGAATCG-TGTAAAAGGAAATGGAGAAGAAGCT-GACA 1725
|| | |||||||| |||||| |||||||| | | || || ||||| ||||| | ||||
Sbjct 1938 CGCCATGAGAATATCTGTCTACTGAATCGAT-TGAAGGGGAATGGTCAAGAAA-TAGACA 1995
Query 1726 TTATGACGACCTTCAAGCTAGATAATGAAATGAAGATGCGTGTATG-TCACTTGCAAGAC 1784
||| ||| |||| |||||||| | ||| ||||||||||||| || | |||||||||||
Sbjct 1996 TTACGAC--CCTT-AAGCTAGAGAGTGAGTTGAAGATGCGTGTCTGCT-ACTTGCAAGAC 2051
Query 1785 CAAGGTA-TATCAATGTTAAATGAGAGTA-CTCAGCTATGTTACAAGTTTCTGAAAATCA 1842
||||| | | ||||||||||||||||| | | ||||| ||||||||||| ||||| |||
Sbjct 2052 CAAGG-ACTGTCAATGTTAAATGAGAGCAGC-CAGCTGTGTTACAAGTTACTGAAGTTCA 2109
Query 1843 TCAAAGAGAAAT 1854
|||||| |||||
Sbjct 2110 TCAAAGGGAAAT 2121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96901583280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5