BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39320.1
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482952 jgi|Araly1|482952|fgenesh2_kg.4__2012__AT2G39320.1 645 0.0
Ahg485067 jgi|Araly1|485067|fgenesh2_kg.5__1059__AT2G39320.1 521 2e-147
Ahg937007 jgi|Araly1|937007|scaffold_501198.1 126 2e-28
> Ahg482952 jgi|Araly1|482952|fgenesh2_kg.4__2012__AT2G39320.1
Length=615
Score = 645 bits (349), Expect = 0.0
Identities = 497/565 (88%), Gaps = 23/565 (4%)
Strand=Plus/Plus
Query 3 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAATTC 62
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 30 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTTTATCAAACCTC 89
Query 63 GGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGAACATGTCATTGTCCACTAA 122
|||| ||||| ||| ||||||||||||||||||||| ||||| | || |||||||||
Sbjct 90 GGATAGTCATAAACGTGTTAGACAAGAAATCGTAAATCAGAA--T---AT-GTCCACTAA 143
Query 123 TTCCCAATGGGGCGATGAAGTGACTTTGAGAGTGGCTGCTGATGTGTATCAAGTAAAAAT 182
||| |||||||||||||||| || |||||||| ||||||||||| ||| |||||||||
Sbjct 144 CTCCGAATGGGGCGATGAAGTCACATTGAGAGTCGCTGCTGATGTATATGGAGTAAAAAT 203
Query 183 AATACTCATTACATCAATCAAACTTATTCCATTTATGGAGTTTTTGCCCAAGTCTCAAAA 242
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 204 AGTACTCATTACATCAATCAAACTTACTCCATTCATGGAGTTTTTGCCCAAGTCTCAAAA 263
Query 243 GGAACCGGACAAAGTCATTCATATGAGCTATCTAGCTGGGATCCATTTCAACTCCATCTA 302
||||| |||| |||||||||| |||||||||| || ||||||||||||||||||||| |
Sbjct 264 AGAACCCGACAGAGTCATTCATTTGAGCTATCTCGCAGGGATCCATTTCAACTCCATCCA 323
Query 303 CaaaaaaaataaagaaaaaGGTTCACGTTCATCTTCATCATC-GAGTTCTGCAGTCTGGA 361
|||||||| || |||||| ||| |||||||||||| | |||||||| || | |
Sbjct 324 CAAAAAAA-----GA----GGTTCAGGTTTATCTTCATCATCTG-GTTCTGCA-TC-G-A 370
Query 362 TGAAGCTACagaggaagaaggagaatgaggcgaagaaaaaggaggaggaggagaaggaaa 421
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 371 TGAAGCTACAGAGGAAGAAGGAGAAGGAGGCGAAGAAAATGGAGGAGGAGGAGAAGGAAA 430
Query 422 ggaaggacatggagaaggaggagaagaaaaaggacaaggaggataagaagaaggataagg 481
||||||| | ||||||||||||||||||||| || |||||||| ||||| ||||| ||||
Sbjct 431 GGAAGGAGAAGGAGAAGGAGGAGAAGAAAAAAGAGAAGGAGGAGAAGAAAAAGGACAAGG 490
Query 482 aggataagaagaaagccaaggtgcagaaagagaagaaggagaagaaggagaagaagaaca 541
||||||||||||| || |||| | ||| | ||| ||||||||||| |||||||||||||
Sbjct 491 AGGATAAGAAGAAGGCGAAGG--C-GAAGGTGAAAAAGGAGAAGAATGAGAAGAAGAACA 547
Query 542 gaaATCACCACTTTCACTATTCTGA 566
|||||||||| ||||||| ||||||
Sbjct 548 GAAATCACCATTTTCACTTTTCTGA 572
> Ahg485067 jgi|Araly1|485067|fgenesh2_kg.5__1059__AT2G39320.1
Length=631
Score = 521 bits (282), Expect = 2e-147
Identities = 544/659 (83%), Gaps = 63/659 (10%)
Strand=Plus/Plus
Query 3 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAATTC 62
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 1 GATGAAAAGTGATGGAAATTGCCAATTCCGTGCTTTAGCTGATCAACTTTATCAAACCTC 60
Query 63 GGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGAACATGTCATTGTCCACTAA 122
|||||||||| ||| ||||||||||||||||||||||||| | | | | ||||||||||
Sbjct 61 GGATTGTCATAAACGTGTTAGACAAGAAATCGTAAAACAG-A-A--T-A-TGTCCACTAA 114
Query 123 TTCCCAATGGGGCGATGAAGTGACTTTGAGAGTGGCTGCTGATGTGTATCAAGTAAAAAT 182
||| |||||||||||||||| || |||||||| ||||||||||||||| ||| |||||
Sbjct 115 CTCCGAATGGGGCGATGAAGTCACATTGAGAGTCGCTGCTGATGTGTATGGAGTCAAAAT 174
Query 183 AATACTCATTACATCAATCAAACTTATTCCATTTATGGAGTTTTTGCCCAAGTCTCAAAA 242
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 175 AGTACTCATTACATCAATCAAACTTACTCCATTCATGGAGTTTTTGCCCAAGTCTCAAAA 234
Query 243 GGAACCGGACAAAGTCATTCATATGAGCTATCTAGCTGGGATCCATTTCAACTCCATCTA 302
||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 235 AGAACCCGACAGGGTCATTCATTTGAGCTATCTCGCAGGGATCCATTTCAACTCCATC-- 292
Query 303 CaaaaaaaataaagaaaaaGGTTCACGTTCATCTTCATCATC-GAGTTCTGCAGTCTGGA 361
| | ||| |||| ||||||| ||| |||||||||||| | ||||||| || ||
Sbjct 293 C---ACAAA-AAAG---GAGGTTCAGGTTTATCTTCATCATCTG-GTTCTGC---CTCGA 341
Query 362 TGAAGCTACagaggaagaaggagaatg-aggcgaagaa--a-aaggagga-gga-ggaga 415
|| |||||||||||||||||||||| | ||| |||||| | || || | ||| | |||
Sbjct 342 TGGAGCTACAGAGGAAGAAGGAGAA-GAAGGAGAAGAAGCAGAA-GAAAAGGGATGAAGA 399
Query 416 ag-gaaaggaaggacatggagaaggaggagaagaaaaaggacaaggaggataag----aa 470
| ||| | ||||| | |||||||||||||| |||||| || |||||||| ||| ||
Sbjct 400 TGAGAACGAAAGGA-A-GGAGAAGGAGGAGAGGAAAAAAGAGAAGGAGGAGAAGAAAAAA 457
Query 471 ga--aggataag---gaggataa-gaaga-aagccaag--gtgcagaaagagaagaagga 521
|| |||| ||| |||| || || || ||| ||| | || ||| | ||| |||||
Sbjct 458 GAGGAGGAGAAGAAAAAGGACAAGGAGGATAAG--AAGAAG-GC-GAAGGTGAAAAAGGA 513
Query 522 gaagaaggagaagaagaacagaaATCACCACTTTCA-----CT-A-TTC---T--GAATG 569
|||||| ||||||||||||||||||||||| ||||| || | ||| | |||||
Sbjct 514 GAAGAATGAGAAGAAGAACAGAAATCACCATTTTCACTTCTCTGATTTCATGTAAGAATG 573
Query 570 ATTTGTTTTGA-TAAATTAAGTGTA-TCTGCATTTGACAAGTTGTATGTTATTATTGGG 626
||||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 574 ATTTGTTTT-ACTAAATTAAGAGTAGTCTGCATTTGACAAGTTGTATGTTATTATTGGG 631
> Ahg937007 jgi|Araly1|937007|scaffold_501198.1
Length=379
Score = 126 bits (68), Expect = 2e-28
Identities = 91/102 (89%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 3 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAAT-T 61
||| |||||||||||||||||||||||||||||||| || |||||||| || ||||| |
Sbjct 218 GATAAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTCTA-CAAAACCT 276
Query 62 CGGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGA 103
||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 277 CGGATTGTCATAAACGTGTTAGACAAGAAATCATACAACAGA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5