BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39350.1
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1 3624 0.0
> Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1
Length=2439
Score = 3624 bits (1962), Expect = 0.0
Identities = 2262/2407 (94%), Gaps = 19/2407 (1%)
Strand=Plus/Plus
Query 62 tcttc-ttcttcttcttcttcttctAGAACAGTACGTTATGAGAGTGTTTTAAGGCCGTT 120
||||| ||| |||||||||||||||| ||| | |||||||| |||||||||| |||||
Sbjct 41 TCTTCTTTC-TCTTCTTCTTCTTCTACAAC---A-GTTATGAGCGTGTTTTAAGACCGTT 95
Query 121 AATTTGTTAAATCACTCTTTAAAAGTTTTTC-TATTG-TATCTATGGCTCGTATTGTAGC 178
||||||||||||||||||| ||||||||||| | ||| || |||||||||||||||||||
Sbjct 96 AATTTGTTAAATCACTCTTAAAAAGTTTTTCTTTTTGTTA-CTATGGCTCGTATTGTAGC 154
Query 179 AGCTAATGATGATGATTCCATGGAGCTAAACACCATCTCCTCTATACACGATTCAACTTT 238
||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||
Sbjct 155 AGCTAATGATGATGATTCCATGGAGCTCAACGCCATCTCCTCTTTGCACGATTCAACTTT 214
Query 239 AGGGCAACTTCTGAAGAACGTTAGTGACGTCAGAAAAATGGCTATTGGAGACGAGACTCC 298
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 215 AGGGCAACTTCTGAAGAACGTCAGTGACGTTAGGAAAATGGCTATTGGAGACGAGACTCC 274
Query 299 AGTTCACGAGTCCTTAAACCAAGACTACAACGATGGTTACATGCGTACAGTTCCATTCGT 358
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 275 AGTTCACGAGTCCTTAAACCAAGACTTCAACGATGGTTACATGCGTACTGTTCCATTTGT 334
Query 359 TCTCTCATTCGACAATCTCACATACAACGTCTCTGTTCGTCCAAAACTAGACTTCCGCAA 418
|||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||
Sbjct 335 TCTCTCATTCGACAATCTCACATACAACGTATCTGTTCGTCGAAAGCTAGAGTTCCGCAA 394
Query 419 TCTCTTTCCACGTAGGAGAACAGAGGATCCGGAGATAGCTCAAACGGCGAGGCCAAAAAC 478
||||||||||| | |||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 395 CCTCTTTCCACGGCGAAGAACAGAGGATCCTGAGATAGCTCAAACCGCGAGGCCAAAATC 454
Query 479 TAAAACCCTTCTCAATAATATCTCTGGCGAGACACGAGATGGAGAAATCATGGCTGTTCT 538
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 455 TAAAACCCTTCTCAATAACATCTCTGGCGAGACTCGAGATGGAGAGATCATGGCGGTTCT 514
Query 539 AGGCGCTAGCGGCTCGGGAAAATCAACACTGATCGATGCATTAGCGAATCGGATTGCCAA 598
|| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 515 CGGAGCTAGCGGTTCGGGGAAATCAACACTGATCGATGCATTAGCGAATCGGATTGCTAA 574
Query 599 AGGAAGCTTAAAAGGAACAGTGAAGCTAAACGGAGAAACACTTCAATCTCGAATGCTCAA 658
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 575 AGGAAGCTTGAAAGGAACAGTGAAGCTAAACGGAGAAACACTTCACTCTCGAATGCTCAA 634
Query 659 AGTTATATCAGCTTACGTGATGCAAGATGACCTTCTCTTCCCAATGCTTACCGTTGAAGA 718
||| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 635 AGTCATATCAGCCTACGTAATGCAAGATGATCTTCTCTTCCCTATGCTTACCGTTGAAGA 694
Query 719 AACACTAATGTTCGCAGCTGAGTTTCGTCTCCCGAGAAGTTTACCTAAATCTAAAAAGAA 778
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 695 AACACTAATGTTCGCTGCTGAGTTTCGTCTTCCGAGAAGTTTACCTAAATCTAAGAAGAA 754
Query 779 GCTTCGTGTGCAAGCTTTGATTGATCAACTAGGTATCAGAAACGCGGCTAAAACTATTAT 838
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 755 GCTTCGTGTGCAAGCTTTGATTGATCAGTTAGGTATTAGAAACGCTGCTAAAACTATTAT 814
Query 839 AGGAGACGAAGGTCACCGTGGAATCTCCGGTGGTGAAAGAAGACGTGTTTCCATCGGAAT 898
||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 815 CGGAGACGAAGGTCACCGAGGAATCTCCGGTGGTGAGAGAAGACGAGTTTCGATCGGAAT 874
Query 899 TGATATAATTCACGATCCGATTCTTCTCTTCCTCGATGAACCAACCTCTGGTTTGGATTC 958
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TGATATAATTCACGATCCAATTCTTCTCTTCCTCGATGAACCAACCTCTGGTTTGGATTC 934
Query 959 AACGAGTGCTTTCATGGTGGTTAAAGTATTGAAGAGGATTGCTCAGAGTGGTAGTATCGT 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 935 AACGAGTGCTTTCATGGTGGTTAAAGTGTTGAAGAGGATTGCTCAGAGTGGCAGTATCGT 994
Query 1019 AATTATGTCGATTCATCAACCTAGTCATCGTGTTCTCGGTTTGCTTGACCGGTTAATCTT 1078
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 995 TATTATGTCGATTCATCAACCGAGTCATCGAGTTCTCGGTTTGCTTGACCGGTTAATCTT 1054
Query 1079 CTTGTCACGTGGCCACACCGTGTATAGTGGATCTCCGGCGAGTCTTCCACGTTTTTTCAC 1138
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1055 CTTGTCTCGTGGCCACACCGTGTACAGTGGATCTCCGGCGAGTCTTCCCCGTTTTTTCAC 1114
Query 1139 CGAATTCGGGAGTCCGATACCGGAGAACGAGAATCGAACGGAGTTTGCG-TTAGATCTCA 1197
||||||||| |||||||| |||||||||||||||||||||||||| ||| || |||||||
Sbjct 1115 CGAATTCGGAAGTCCGATTCCGGAGAACGAGAATCGAACGGAGTTCGCGCTT-GATCTCA 1173
Query 1198 TCCGTGAGCTTGAAGGATCCGCCGGAGGAACGAGAGGATTAATCGAATTCAACAAAAAAT 1257
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1174 TCCGTGAGCTTGAAGGATCCGCCGGAGGAACAAGAGGATTAGTCGAATTCAACAAAAAAT 1233
Query 1258 GGCAAGAGATGAAGAAACAGAGCAATCGTCAACCACCGTTGACTCCACCGTCATCACCGT 1317
||||||||||||||||||| | ||| ||||||||||| |||||||| || ||||||||||
Sbjct 1234 GGCAAGAGATGAAGAAACATAACAACCGTCAACCACCATTGACTCCTCCTTCATCACCGT 1293
Query 1318 ACCCAAATCTAACACTAAAAGAAGCAATCGCCGCAAGTATCAGCAGAGGAAAGCTAGTTT 1377
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||
Sbjct 1294 ACCCAAATCTAACACTAAAAGAAGCAATCGCCGCCAGTATCAGCCGAGGAAAGTTGGTTT 1353
Query 1378 CCGGCGGTGAATCCGTCGCTCACGGCGGAGCAACCACCAACACCACAACCCTAGCCGTTC 1437
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 1354 CCGGCGGTGAATCCGTCGCTCACGGCGGAACAACCACCAACACCACAACTCTAGCCGTAC 1413
Query 1438 CTGCATTCGCGAATCCAATGTGGATCGAAATCAAAACTCTCTCGAAACGATCAATGCTCA 1497
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1414 CTGCATTCGCGAATCCAATGTGGATCGAAATCAAAACTCTCTCGAAACGCTCAATGCTCA 1473
Query 1498 ATTC-ACGAAGACAACCAGAGCTATTCGGAATCAGAATCGCCTCTGTTGTTATCACCGGA 1556
|||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1474 ATTCGA-GAAGACAACCAGAGATATTCGGAATCAGAATCGCCTCCGTTGTTATCACCGGA 1532
Query 1557 TTCATTCTCGCCACCGTGTTCTGGCGATTAGATAATTCGCCTAAAGGAGTTCAAGAGCGG 1616
||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1533 TTCATCCTCGCCACCGTGTTCTGGCGATTAGACAATTCACCAAAAGGAGTTCAAGAGCGG 1592
Query 1617 TTAGGGTTCTTCGCCTTCGCGATGTCGACAATGTTCTACACTTGCGCCGATGCGTTACCA 1676
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1593 TTAGGGTTCTTCGCCTTCGCGATGTCAACAATGTTCTACACTTGCGCCGATGCATTACCA 1652
Query 1677 GTTTTTCTCCAGGAACGTTATATCTTCATGAGAGAAACTGCTTACAACGCTTACCGGAGA 1736
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1653 GTTTTTCTCCAGGAACGTTACATCTTCATGAGAGAAACTGCTTACAACGCTTACCGGAGA 1712
Query 1737 TCCTCATACGTTCTCTCTCACGCCATCGTCTCATTCCCGTCGCTCATCTTCCTCTCTGTA 1796
||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1713 TCCTCCTACGTTCTCTCTCACGCCATCGTCTCTTTCCCGTCGCTTATCTTCCTCTCCGTA 1772
Query 1797 GCTTTCGCGGCGACGACGTATTGGGCAGTGGGCTTAGATGGAGGCCTAACGGGCCTTTTG 1856
||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1773 GCTTTTGCAGCGACGACGTATTGGGCAGTGGGCTTAGATGGAGGCCCAATGGGCCTTTTG 1832
Query 1857 TTCTACTGTCTGATCATTTTAGCCTCGTTCTGGTCAGGAAGCTCCTTTGTCACGTTTCTA 1916
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1833 TTCTACTGTTTGATCATTTTAGCCTCCTTCTGGTCAGGAAGCTCCTTTGTCACGTTTCTA 1892
Query 1917 TCAGGTGTGGTTCCTAGTGTGATGTTGGGTTACACAATCGTCGTTGCTATTTTGGCTTAC 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1893 TCAGGTGTGGTTCCTAGTGTGATGTTGGGTTACACAATCGTCGTTGCTATTTTAGCTTAC 1952
Query 1977 TTCTTGTTGTTCAGTGGATTCTTCATCAACAGAAACCGAATCCCGGATTACTGGATTTGG 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TTCTTGTTGTTCAGTGGATTCTTCATCAACAGAAACCGAATCCCGGATTACTGGATTTGG 2012
Query 2037 TTTCATTACATGTCATTGGTGAAGTACCCGTATGAAGCGGTTTTACAGAACGAGTTCTCT 2096
||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 2013 TTTCATTACATGTCATTGGTGAAATACCCCTACGAAGCAGTTTTACAGAACGAGTTCTCT 2072
Query 2097 GATGCGACCAAGTGTTTTGTGAGAGGAGTTCAGATTTTCGACAACACGCCATTAGGGGAA 2156
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2073 GATGCGACCAAGTGTTTTGTGAGAGGAGTTCAGATTTTCGACAACACTCCGTTAGGGGAA 2132
Query 2157 CTACCGGAAGTGATGAAGCTGAAGCTTCTTGGTACAGTGAGCAAGTCCCTCGGGGTAACG 2216
|||| |||||||||||||||| ||| |||||||||||||||||||| ||||| || |||
Sbjct 2133 TTACCAGAAGTGATGAAGCTGAGGCTGCTTGGTACAGTGAGCAAGTCGCTCGGTGTGACG 2192
Query 2217 ATATCGAGCACGACTTGTTTAACTACTGGTTCAGATATTCTGAGGCAGCAAGGTGTGGTT 2276
||||| ||| |||| ||||||||||||||||| |||||||||| | ||||||| ||||||
Sbjct 2193 ATATCTAGCTCGACGTGTTTAACTACTGGTTCGGATATTCTGACGAAGCAAGGAGTGGTT 2252
Query 2277 CAGCTGAGTAAATGGAATTGCTTGTTCATCACAGTTGCTTTTGGGTTCTTTTTTAGGATT 2336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 CAGCTGAGTAAATGGAATTGCTTGTTCATCACAGTTGCTTTTGGGTTCTTTTTTAGGATT 2312
Query 2337 TTGTTCTACTTCACTTTGTTACTAGGAAGCAAGAACAAGCGGAGGTGAAAACAACTA-G- 2394
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2313 TTGTTCTACTTCACTTTGTTACTTGGAAGCAAGAACAAGCGGAGGTGAAAACAAAAATGC 2372
Query 2395 -AA--GACCCAAATCAAAA-CATACTTGTATTTTCTGTTTGTAATTCCTTGAATTGTTTA 2450
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2373 TAATAGACCCAAATCAAAAACATACTTGTATTTTCTGTTTGTAATTCCTTGAATTGTTTA 2432
Query 2451 ATGAAAA 2457
||| |||
Sbjct 2433 ATGCAAA 2439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5