BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39360.1
Length=2683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934693 jgi|Araly1|934693|scaffold_402681.1 3663 0.0
> Ahg934693 jgi|Araly1|934693|scaffold_402681.1
Length=2483
Score = 3663 bits (1983), Expect = 0.0
Identities = 2334/2501 (93%), Gaps = 34/2501 (1%)
Strand=Plus/Plus
Query 98 CTCTGTTCTTCGTTGGC---TATGATAAACCTCAAGCTATTCTTAGAGCTAAAGTTATGT 154
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 1 CTCTGTTCTTCGTTGGCTATTATGATAAACCTAAAGCTCTTCTTAGAGCTAAAGTTATGT 60
Query 155 TTTTTAATAACT-TTACTCTGTTCTTCACACATCTCCTCTGTTTCTGACACTTTCTTCAT 213
|||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 61 TTTTTAATAACTGTT-CTCTGTTCTTCACACGTCTCCTCTGTTTCTGATACTTTCTTCAT 119
Query 214 CAACTGTGGATCTCCGACGAATGTAACAGTCAACAATAGAACCTTCGTCTCCGACAACAA 273
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 CAACTGTGGATCTCCGACGAATGTAACAGTCAACAATAGAACCTTCGTGTCCGACAACAA 179
Query 274 TCTTGTTCAAGGATTCTCTGTCGGAACCACCGATTCGAATTCAGGTGATGAATCGACTCT 333
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TCTTGTTCAAGGAATCTCTGTCGGAACCACCGATTCGAATTCAGGTGACGAATCGACTCT 239
Query 334 GTTTCAGACCGCAAGAGTATTCTCCGATGAATCATCATCAACTTACAGATTCCCGATCGA 393
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 240 GTTTCAGACCGCAAGAGTATTCTCCGATG-A--ATCATCAACTTACCGATTCCCGATCGA 296
Query 394 GGAACACGGTTGGTTCTTGATTCGTATTTACTTTTTACCATTAGTCTCTGCTTCTCAAGA 453
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 297 GAAACACGGTTGGTTCTTGATTCGTCTTTACTTTTTACCCTTAGTCTCTGCTTCTCAAGA 356
Query 454 TTTAACCACAGCTAGATTCTCAGTCTCGGCTCAGAATTTCACTCTGATCAGAGAATATAA 513
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 TCTAACCACAGCTAGATTCTCAGTCTCGGCTCAGAATTTCACTCTGATCAGAGAATACAA 416
Query 514 ACCCTCAACGACTTCTGTTGTTAGAGAATACATTTTAAACGT-TAC-CACAGATAGTCTC 571
||||||||||||||||||||||| |||||||| ||||||| | | | || |||| |||
Sbjct 417 ACCCTCAACGACTTCTGTTGTTAAAGAATACAGTTTAAACATCT-CTAAC-GATAATCT- 473
Query 572 TTGCT-TC-AGTTTC-TCCCTAGAA-CTGGTTCTGTTTCTTTCATCAATGCTTTGGAAGT 627
| || || | |||| | | | || | |||||| | ||||||||||||| ||||||||
Sbjct 474 AT-CTCTCGAATTTCGT-CGT-CAAGCCGGTTCTATCGCTTTCATCAATGCCTTGGAAGT 530
Query 628 TTTGAGACTTCCAGAGACTTTGATACCTGAAGATGCAAAACTCATTGGTACACAGAAGGA 687
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 531 TTTTAGACTTCCAGAGAATTTGATACCTGAAGATGCAAAACTCATTGGTACACAAAAGGA 590
Query 688 TCTTAAGCTCAGTAGTCATGCGATGGAGACTGTTTCTCGTGTAAACATGGGGAATCTTAG 747
||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCTCAAGCTCAGGAGTCACGCTATGGAGACTGTTTCTCGTGTAAACATGGGGAATCTTAG 650
Query 748 TGTGAGTCGTGATCAAGATAAGCTGTGGAGGCAATGGGATTCTGATTCTGCTTATAAAGC 807
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 651 CGTGAGTCGTGATCAAGATAAGCTATGGAGGCAATGGGATTCGGATTCTGCGTATAAAGC 710
Query 808 TCACTTCGGTACACCGGTTATGAACCTCAAAGCGGTTAACTTCAGTGCTGGTGGAATAAC 867
||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 711 TCAATTCGGAACGCCGGTTATGAACCTCGAAGCGGTTAACTTCAGTGCTGGTGGAATAAC 770
Query 868 TGATGACATTGCACCAGTTTACGTCTATGGAACCGCCACGAGGTTAAACTCTGATCTTGA 927
|||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 771 TGATGACATTGCTCCTGTTTATGTCTATGGAACAGCCACGAGGTTAAACTCTGA---TGA 827
Query 928 TCCTAATACTAACGCCAATCTTACTTGGACATTCAAAGTCGAGCCTGGTTTCGATTACTT 987
|||| |||||| ||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 828 TCCTCGTACTAATGCCAATCTTGCTTGGACATTTAAAATCGTGCCTGGTTTCGATTACTT 887
Query 988 TGTTCGGTTTCACTTTTGTAACATAATAGTGGATCCTTTTGGATTCGAGCGTCAGATACG 1047
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 888 TGTCCGGTTTCACTTTTGTAACATAATAGTGGATCCTTTTGGTTTCGAGCGTCAGATACG 947
Query 1048 TTTTGACATTTTTGTGAACTCAGAGAAAGTTAGAACCATTGATATGACAGAGGTTTTAAA 1107
||||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||
Sbjct 948 CTTTGACATTTTTGTGAATTCAGAGAATGTTAGGTCCGTTGATATGGCAGAGGTTGCAAA 1007
Query 1108 TGGAACTTTTGGGGCTCCTT-TTTTCGTTGATGCAGTGATGC-GTAAAGCGAAAAGCCGT 1165
||| |||||||| ||||||| |||| ||||||||||||||| | ||||||| ||| ||
Sbjct 1008 TGGCACTTTTGGAGCTCCTTATTTT-TTTGATGCAGTGATGCAG-AAAGCGAGAAGTCGA 1065
Query 1166 GAAGGGTTCTTGAATTTATCTATTGGTTTAGTTATGGATGTTTCTTCGTACCCTGTTTCT 1225
||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1066 GAAGGATTCTTGAATCTATCTATTGGTTTAGGTATGGATGTTTCTTCGTACCCTGTTTCT 1125
Query 1226 TTTATTAACGGATTTGAGATTTCGAAGCTAAGCAATGATAAGCGGAGTCTTGATGCTTTT 1285
||||| |||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||
Sbjct 1126 TTTATCAACGGATTTGAGATTTTGAAGCTAAGCAACGATAAGCAGAGTCTTGACGCTTTT 1185
Query 1286 GATGCCAT-TTTACC-TGATGGTTCTTCGAGTAACAAGAGTTCGAATACGAGTGTCGGAT 1343
|||| | | ||| || ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1186 GATG-C-TGTTTCCCATGATGGTTCTTCGCGTAACAAGAGTTCGAATACGAGAATCGGAT 1243
Query 1344 TGATAGCTGGTTTGTCTGCAGCTTTGTGTGTTGCTTTAGTGTTTGGTGTGGTTGTGTCTT 1403
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1244 TGATAGCTGGTTTATCTGCAGCTTTGTGTGTTGCTTTAGTGTTTGGTGTGGTTGTATTTT 1303
Query 1404 GGTGGTGCATTAGGAAAAGAAGAAGAAGAAATAGACAAATGCAGACTGTTCATTCTAGAG 1463
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GGTGGTGTGTCAGGAAAAGAAGAAGAAGAAATAGACAAATGCAGACTGTTCATTCTAGAG 1363
Query 1464 GAGATGATCATCAGATTAAGAAGAATGAAACAGGTGAGAGCTTAATCTTTTCGAGCTCAA 1523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1364 GAGATGATCATCAGATTAAGAAGAATGAAACCGGTGAGAGCTTAATCTTTTCGAGCTCAA 1423
Query 1524 AGATCGGTTATCGATACCCTTTGGCTCTAATCAAGGAAGCAACTGATGATTTTGATGAAA 1583
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1424 AGATCGGCTATCGATACCCTTTGGCTCTAATCAAGGAAGCAACTGATGATTTTGATGACA 1483
Query 1584 GCTTAGTGATTGGGGTTGGTGGGTTTGGTAAAGTTTACAAAGGAGTCTTGAGAGACAAAA 1643
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1484 GCTTAGTGATTGGGGTTGGTGGGTTTGGTAAAGTTTACAAAGGAGTCTTGAGGGACAAAA 1543
Query 1644 CCGAAG-TAGCTGTGAAACGTGGTGCTCCTCAATCTCGACAAGGTCTGGCGGAGTTTAAG 1702
||| || ||||||||||||| |||| |||||||||||| |||||||| ||||| || |||
Sbjct 1544 CCG-AGATAGCTGTGAAACGCGGTGTTCCTCAATCTCGTCAAGGTCTTGCGGAATTCAAG 1602
Query 1703 ACAGAGGTTGAAATGCTTACTCAGTTCAGACACAGACATTTGGTTTCTTTAATCGGATAT 1762
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1603 ACAGAGGTTGAAATGCTTACTCAGTTCAGACACAGGCATTTGGTTTCTTTAATCGGATAT 1662
Query 1763 TGCGATGAAAACAGTGAAATGATCATTGTCTATGAATATATGGAGAAGGGAACGCTTAAG 1822
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1663 TGTGATGAAAACAGCGAAATGATCATTGTTTATGAGTATATGGAGAAGGGAACGCTTAAG 1722
Query 1823 GACCATTTGTATGACTTGGATGATAAGCCGAGGTTGAGTTGGAGACAGAGGCTTGAGATA 1882
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1723 GACCATTTGTATGACTCGGATGATAACCCGAGGTTAAGTTGGAGACAGAGGCTTGAGATA 1782
Query 1883 TGCGTTGGTGCAGCTAGAGGGCTTCATTATCTCCACACAGGTTCCACAAGAGCAATCATA 1942
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1783 TGCGTTGGTGCAGCTAGAGGGCTTCACTATCTCCACACAGGTTCCACAAGAGCAATCATA 1842
Query 1943 CACCGCGATGTGAAATCTGCTAACATTCTATTGGATGATAATTTTATGGCTAAAGTTGCA 2002
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1843 CACCGCGATGTGAAATCTGCTAACATTCTCTTGGATGAGAATTTTATGGCCAAAGTTGCA 1902
Query 2003 GATTTTGGATTGTCTAAGACAGGTCCTGATCTTGATCAAACACATGTGAGTACCGCGGTC 2062
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1903 GACTTTGGATTGTCTAAGACAGGTCCGGATCTTGATCAAACACATGTGAGTACAGCGGTT 1962
Query 2063 AAAGGAAGCTTTGGATATCTTGATCCAGAGTATCTAACAAGACAACAATTAACTGAGAAA 2122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1963 AAAGGAAGCTTTGGATATCTTGATCCAGAGTATCTAACAAGACAACAATTGACTGAGAAA 2022
Query 2123 TCTGATGTTTACTCTTTTGGTGTGGTGATGCTTGAAGTAGTATGTGGTAGACCAGTCATT 2182
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2023 TCCGATGTTTACTCTTTTGGTGTGGTGATGCTTGAAGTAGTATGCGGTAGACCAGTCATT 2082
Query 2183 GATCCATCACTACCGAGAGAGAAAGTGAATTTGATCGAATGGGCGATGAAGTTGGTGAAG 2242
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 GATCCTTCGCTACCTAGAGAGAAAGTGAATTTGATCGAATGGGCGATGAAGTTGGTGAAG 2142
Query 2243 AAAGGGAAATTGGAAGATATCATAGACCCATTTCTTGTAGGAAAAGTAAAGCTTGAAGAG 2302
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 2143 AAAGGGAAATTGGAAGATATCATAGACCCTTTTCTTGAAGGGAAAGTAAAGCTTGAAGAG 2202
Query 2303 GTGAAAAAGTACTGTGAGGTAACAGAGAAGTGTTTGTCCCAAAACGGAATTGAGAGGCCA 2362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 GTGAAAAAGTACTGTGAGATAACAGAGAAGTGTTTGTCCCAAAACGGAATTGAGAGGCCA 2262
Query 2363 GCAATGGGAGATTTGTTGTGGAACCTAGAGTTCATGCTTCAGGTGCAAGCAAAAGATGAG 2422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 ACAATGGGAGATTTGTTGTGGAACCTAGAGTTCATGCTTCAGGTGCAAGCAAAAGATGAG 2322
Query 2423 AAAGCAGCAATGGTGGATGATAAGCCAGAGGCGAGTGTCGTTGGCTCGACCATGCAGTTT 2482
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 2323 AAAGCAGCAATGGTGGATGATAAGCCAGAGGCGAGCGTCGTGGGCTCGACCGTGCAGTTT 2382
Query 2483 AGTGTGAATGGAGTGGGAGATATTGCAGGGGTCTCAATGAGCAAAGTTTTCGCACAAATG 2542
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 2383 AGTGTGAATGGAGTGGGAGATATTGCAGGGGTCTCAATGAGTAAAGTTTTTGCGCAAATG 2442
Query 2543 GTTAGAGAAGAAACGAGATAAAT-ATTTGATCAAAAGAAGA 2582
||||||||||||||| |||||| |||||||||||||||||
Sbjct 2443 GTTAGAGAAGAAACGCGATAAAAGATTTGATCAAAAGAAGA 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101205780965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5