BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39370.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482956 jgi|Araly1|482956|fgenesh2_kg.4__2016__AT2G39370.1 1674 0.0
> Ahg482956 jgi|Araly1|482956|fgenesh2_kg.4__2016__AT2G39370.1
Length=1092
Score = 1674 bits (906), Expect = 0.0
Identities = 1040/1103 (94%), Gaps = 15/1103 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTATCTAGAGCGATGCGACAGTGTAGAAGAAGATTACATTGATATGGAAGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCGGCTTATCTAGAGCGATGCGACAGTGTAGAAGAAGATTACATTGACATGGAAGTA 60
Query 61 ACTTCTTTCACAAACCTCGTACGTAAAACTCTGAGCAACAACTACCCTCGAGAGTTCGAG 120
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 ACTTCTTTCACAAACCTCGTACGCAAAACTCTGAACAACAACTACCCTCGAGAGTTCGAG 120
Query 121 TTCCAAATGTCTCATCTTTGTCCTCTTGAGATAGACAAAACCACTTC-CCCTGCGGACGA 179
|||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||
Sbjct 121 TTCCAAATGTCTCATCTTTGTCCTCTCGAGATAGACAAAACCACTTCTCCC-GCAGACGA 179
Query 180 ACTCTTCTACAAAGGCAAGCTTCTCCCTCTTCACTTACCTCCACGTCTCCAAATGGTCCA 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ACTCTTCTACAAAGGCAAGCTTCTCCCTCTTCACTTACCTCCTCGTCTCCAAATGGTCCA 239
Query 240 AAAGATTCTAGAAGATTACACCTTCGACGACGAATTCTACAGCACTCCTTTAGCCACCGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAAGATTCTAGAAGATTACACCTTCGACGACGAATTCTACAGCACTCCTTTAGCCACTGG 299
Query 300 AACGGTTACAACTCCAGTGACGAGCAACACTCCGTTCGAGTCCTGCACCGTCTCTCCGGC 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AACGGTTACAACTCCGGTGACGAGCAACACTCCGTTCGAGTCCTGCACCGTCTCTCCGGC 359
Query 360 AGAGTCTTGCCAAGTGAGTAAAGAGCTTAACCCTGAAGACTACTTCCTAGAATATTCAGA 419
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 360 AGATTCTTGCCAAGTGAGTAAAGAGCTTAACCCTGAAGACTATTTCCTTGAATATCCTGA 419
Query 420 TTCATTGGAGGAGGACGATGAGAAGAAGAAATCTTGGACCACGAAACTAAGATTGATGAA 479
||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 420 CTCATTGGGGGAGGAGGATGAGAAGAAGAAACCTTGGACCACGAAACTGAGATTGATGAA 479
Query 480 GCAGTCAAGTCTCGGAACGAAGATTAAAGCTTCGAGAGCTTATCTAAGATCGTTCTTTGG 539
||| |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 480 GCAATCAAGTCTTGGAACGAAGATTAAAGCTTCGAGAGCGTATCTTAGATCTTTCTTTGG 539
Query 540 TAAGACAAGTTGTTCTGATGAGTCATCATGCGCGTCTTCCGCTGCGAGAGTTGCAGACGA 599
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TAAAACAAGTTGTTCTGATGAGTCATCATGCGCGTCTTCCGCTGCAAGAGTTGCAGACGA 599
Query 600 AGATTCGGTTTTGAGGTATTCGCGAGTAAAGCCTTTTGGACAGATCAAAACAGAGAGACC 659
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 600 AGATTCGGTTTTGAGGTATTCGCGAGTGAAGCCTTTTGGACAAATCAAAACAGAGAGACC 659
Query 660 TAAAAAACAGAGTAATGGTTCTGTTTCCGGAAGCCATAGGAGATCATTTTCAGTTTCTAT 719
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 660 TAAAAAACAGAGTAATAGTTCTGTTTCCGGGAGCCATAGGAGATCGTTTTCAGTTTCTAT 719
Query 720 GAGGAGGCAAGCTGCCAAGAGTTCTAACAACAAATCATCGAATAGTTTAGGGTTTCGTCC 779
|||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 720 GAGGAGACAAGCTGCAAAGAGTTCGAACAACAAATCATCGAGTAGTTTAGGGTTTCGTCC 779
Query 780 GTTGCAGTTTTTGAAGAGAAGTACGAGTTCGAGTTCTGAAATTGAGAATTCTATCCAAGG 839
| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 780 GCTGCAGTTTTTGAAGAGAAGTACGAGTTCGAGTTCTGAGATAGAGAATTCTATCCAGGG 839
Query 840 AGCTATCTTGCATTGCAAGCAATCACAGCAGCAGAAGCAGAAACAGAAACAGTATAGTAC 899
||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 840 AGCTATCTTGCATTGCAAGCAATCACATCAGCAGAAGCAGAAACAG------TATAGT-- 891
Query 900 TGTTAACGAGGTCGGATTCTGTTCGTTGTCAGCGTCAAGAATCGCAGCTAGGGATGATCA 959
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 892 -GTTAATGAGGTCGGATTCTGTTCGTCGTCAGCTTCAAGAATCGCAGCTAGGGATGATCA 950
Query 960 AGAATGGGCTCAGATGTTTAGGGGCTAACTAAAGATATCGGTCATGAAGAAAGT-TAAGA 1018
|||| |||||||||||||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct 951 AGAACGGGCTCAGATGTTTAGGGGCTAACTAAAGATATCGGACATGCAGAAA-TATAAGA 1009
Query 1019 AGGAAATAAGAGTTGAGCGAGAG--TGAGAGAACTAGAGAATAAATTCTTTGTTTTCTTT 1076
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1010 AGGAAATAAGAGTTGAGTGAGAGAGTGAGAGAACTAGAGAATAAATTCTTTGTTTTCTTT 1069
Query 1077 GTATTTTGCCTCTTCTTTGTTTT 1099
|||||||| |||||||||||||
Sbjct 1070 TTATTTTGCTTCTTCTTTGTTTT 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5