BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39380.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482957 jgi|Araly1|482957|fgenesh2_kg.4__2017__AT2G39380.1 3125 0.0
> Ahg482957 jgi|Araly1|482957|fgenesh2_kg.4__2017__AT2G39380.1
Length=2045
Score = 3125 bits (1692), Expect = 0.0
Identities = 1935/2051 (94%), Gaps = 22/2051 (1%)
Strand=Plus/Plus
Query 32 AACATATTCAGAAAG-A-AG-AGTAGTA--AGTAGTAAAATCTTATCAATGTCGAAAAAA 86
|||||| |||| ||| | || ||||||| |||||||||| || ||||||| ||||||||
Sbjct 1 AACATAATCAGGAAGAAGAGTAGTAGTAGTAGTAGTAAAACCTCATCAATGGCGAAAAAA 60
Query 87 CCGAAGTCTGttcatttctctacctcttctcctaaatcattcctttcttcttttccttca 146
| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 ACAAAGTCTGTTCATTTCTCTACCTCTTCTCCTAAATCACTCCTTTCTTCTTTTTCTTCA 120
Query 147 ttcacttctctcccggcttctcctctcaACCAGACTTTTTCTCAGTCGATGATGGAGGAA 206
|| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 TTAACTTCCCTCCCGGCTTCTCCTCTTAATCAGACTTTTTCTCAGTCGATGATGGAGGAA 180
Query 207 ACCGTTGAGGCCGCAGAATCAATCATCAAGAAATGGGATCCGAACTCACCATCCTACACA 266
| |||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 181 AACGTTGAGGCCGCGGAATTGATCATCAAGAAATGGGATCTGAACTCACCGTCCTACACA 240
Query 267 AAGATCATCTCTCTGTTTAGTCATAGCAGAAGAGAGGCCAAAGAATTCATCAGATGCATC 326
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AGGATCATCTCTCTGTTTAGTCATAGCAGAAAAGAGGCCAAAGAATTCATCAGATGCATC 300
Query 327 CGTGACTTACGCAGAGCCATGCACTTTCTTATCTCTCAGCACTCAAAATCTGCCAAGCTA 386
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CGTGACTTACGCAGAGCCATGCACTTTCTTATCTCTCAGCACTCTCAATCTGCCAAGCTA 360
Query 387 GTTCTTGCACAGCACCTGATGCAGATTGCTATGGCCAGGCTCGAAAAAGAGTTCTTCCAG 446
|||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 361 GTTCTTGCACAGCATCTGATGCAGATCGGTATGGCCAGGCTCGAGAAAGAGTTCTTCCAG 420
Query 447 ATTCTGTCTTCAAACCGAGACCAACTTGATCCTGAATCTGTCTCTGGTCACTCCTCCATT 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ATTCTGTCTTCAAACCGAGACCAACTTGATCCTGAATCTGTCTCTGGTCACTCCTCAATT 480
Query 507 TCAAGCAATTCAGAATTTGAAGATGTTATGCAATCTTCTGATGATGAAGAAGAAGATGAG 566
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 TCAAGCAATTCAGAATTTGAAGATGTTATGCAA---TCTGATGATGATGAAGAAGATGAG 537
Query 567 CTGAAGAAGGCTGGTGAAACGATCACTAAGGTCGAAAAAGCTGCAGCACTTGTGATGTCA 626
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CTGAAGAAGGCTGGTGAAACGATCACCAAGGTCGAAAAAGCTGCAGCACTTGTGATGTCA 597
Query 627 GACCTCAAGGTCATAGCAGAGACTATGATCAGCTGTGGATATGGTAAAGAGTGCATAAAG 686
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 598 GACCTCAAGGTCATAGCAGAGAGTATGATCAGTTGTGGATATGGTAAAGAGTGCATAAAG 657
Query 687 AGCTATAAGTTGATCAGAAAGTCAATTGTAGATGAAGGGCTACACTTACTTGGTATCGAA 746
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AGCTATAAGTTGATCAGAAAGTCAATTGTAGATGAAGGGCTACACTTACTTGGGATCGAA 717
Query 747 AAGTGCAAGATCTCCCGGTTCAACAGAATGGACTGGGACGTGCTCGAGCATATGATCAAG 806
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 AAGTGCAAGATCTCCCGGTTCAACAGAATGGACTGGGGCGTGCTCGAGCATATGATCAAG 777
Query 807 AACTGGATCAAAGCTGCAAAGATTGGTGTCATAACACTCCTCCGCGGAGAGAAACTTCTA 866
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 778 AACTGGATCAAAGCTGCAAAGATTGGAGTCATAACACTCCTCCGCGGAGAAAAACTTCTC 837
Query 867 TGTGATCATGTCTTCTCTGCTTCAAGTACAATAAGAGAGTCTTGCTTTTACGAGATAGTG 926
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TGTGATCATGTCTTCTCTGCTTCAAGTACCATAAGAGAGTCTTGCTTTTACGAGATAGTG 897
Query 927 AACGAAGCAGGAATCAATCTTTTCAAGTTCCCAGAACTCGTTG-C-----GGAGAAAAAA 980
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 898 AACGAAGCAGGAATCAATCTTTTCAGGTTCCCAGAACTCGTTGCCAATAAGGAGAAAAAA 957
Query 981 CCATCGCCAGAGAGGATCTTCAGGCTGATGGATCTCTATGCAGCAATCTCTGACCTTAGA 1040
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCATCGCCCGAGAGGATCTTCAGGCTGATGGATCTCTATGCAGCAATCTCTGACCTTAGG 1017
Query 1041 CCAGACATAGAACTGATATTCCACTTTGACTCAGTAGCTGCTGTTAAAACTCTGGTCCTC 1100
||||||||||| ||||||||||||||||| |||||||||||||| |||||| | ||| ||
Sbjct 1018 CCAGACATAGAGCTGATATTCCACTTTGATTCAGTAGCTGCTGTAAAAACTATAGTCATC 1077
Query 1101 TCATCGCTGAAGAAACTCAAGGACTCAATCTACACAAGTCTCATGGAATTTGAGTCAACA 1160
||||||||||||||||||||| | ||||| |||||||||||| ||||| |||||| |||
Sbjct 1078 TCATCGCTGAAGAAACTCAAGCAGGCAATCCACACAAGTCTCACGGAATATGAGTCGACA 1137
Query 1161 ATACAAAAGGATTCTTCTAAAGCACTAACTGCAGGAGGAGGGATTCACAAGCTGACTAGA 1220
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 ATACAAAAGGATTCTTCGAAAGCACTAACTGCAGGAGGAGGGATTCACAAGCTGACTCGA 1197
Query 1221 TCAACCATGAGTTTCATATCATCTCTTTCTGAATACAGCCGTGTGTTATCAGAGATTCTT 1280
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1198 TCAACCATGAGTTTCATATCATCTCTTTCTGAATACAGCCGTGTGTTATCCGAGATCCTT 1257
Query 1281 GCAGAGCATCCACTTAAGAAAAACACACGTATGCTAGAATCTTATTTCACAGCTCCAATC 1340
||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1258 GCAGAACATCCTCTTAAGAAAAACGCCCGTATGCTAGAATCTTATTTCACAGCTCCAATC 1317
Query 1341 TTAGAAGATGAACACAACAACCACGCAGTCTCGGTCCATCTAGCTTGGCTCATCTTGATT 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1318 TTAGAAGATGAACACAACAACCACGCAGTCTCGGTCCATCTAGCTTGGCTCATCTTGGTT 1377
Query 1401 TTCCTATGCAAACTAGACATCAAAGCAGAGAGTTACAAGGATGTTTCCCTCTCTTACCTC 1460
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1378 TTCCTATGCAAACTAGACATCAAAGCAGAGAGCTACAAGGATGTTTCTCTCTCTTACCTC 1437
Query 1461 TTCCTAGTGAACAACATTCAGTTTGTGGTTGATACCGTTCGTTCAACACACCTCAGGAAC 1520
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 TTCCTAGTGAACAACATTCAGTTTGTGGTTGATACCGTTCGTTCAACTCACCTCAGGAAC 1497
Query 1521 CTCCTCGGAGACGACTGGCTCACAAAGCACGAAGCAAAACTCAGAAGCTACGCTGCAAAC 1580
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1498 CTCCTGGGAGACGACTGGCTCACAAAGCACGAAACAAAACTCAGAAGCTACGCTGCAAAC 1557
Query 1581 TATGAGATCGCAGCGTGGGCCAATGTATACATATCTTTACCAGAGAAAACAAGTAGCAGA 1640
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1558 TACGAGATCGCAGCGTGGGCCAATGTATACATATCTTTACCAGAGAAAACAAGTAGCACA 1617
Query 1641 CTATCACCAGAGGAAGCCAAAACACATTTCAAGAGGTTTCACGCGGTATTCGAAGAAGCT 1700
|||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 1618 CTATCACCAGAGGAGGCCAAAGCACATTTCAAGAGATTTCACGCGGCATTCGAAGAAGCT 1677
Query 1701 TATATGAAACAATCATCATGTGTGATAACAGATGCAAAACTTAGGAACGAGCTAAAAGTT 1760
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct 1678 TATATGAAACAATCATCATGTGTCATAACAGATGCAAAGCTTAGGAACGAGCTTAAGGTT 1737
Query 1761 TCCATAGCAAAGAAAATAGTACCGGAATACAGAGAGTTTTACGGTAAGTACTTGCCAACG 1820
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1738 TCCATAGCAAAGAAAATTGTACCGGAATACAGAGAGTTTTATGGCAAGTACTTGCCAACG 1797
Query 1821 CTGAGTAAGGAGAGAAACATAGAGATGCTGGTGAGCTTTAAGCCTGATAACTTGGAGAAC 1880
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1798 CTGAGCAAGGAGAGAAACATAGAAATGCTGGTGAGGTTTAAGCCTGATAACTTGGAGAAC 1857
Query 1881 TATCTCTCGGATTTGTTCCATGGAACACCAATACTTAGTGGCtcttcttcttcttcttcc 1940
|||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1858 TATCTCTCAGATCTGTTTCATGGAACACCAATACTTAGTGGTTCTTCTTCTTCTTCTTCT 1917
Query 1941 tctttgtcttcttcatcttGTATCTCACTTGGATGTGTAAGAAACTAAAGTTCACAGTTA 2000
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1918 TCTT---CTTCTTCATCTTGTATCTCACTTGGATGTGTAAGAAACTAAAGTTCAGAGTTA 1974
Query 2001 GAACATTTGCTTAGTATCTTCATCACTTACATTAA--G--TG-GATTATGTGAAATATTA 2055
|| |||||||||||||||||||||||||| | ||| | || |||||||||||||||||
Sbjct 1975 GAGCATTTGCTTAGTATCTTCATCACTTAAACTAAATGGATGTGATTATGTGAAATATTA 2034
Query 2056 AATATGTAAGC 2066
|||||||||||
Sbjct 2035 AATATGTAAGC 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5