BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39390.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482958 jgi|Araly1|482958|fgenesh2_kg.4__2018__AT2G39390.1 852 0.0
Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2 492 1e-138
> Ahg482958 jgi|Araly1|482958|fgenesh2_kg.4__2018__AT2G39390.1
Length=595
Score = 852 bits (461), Expect = 0.0
Identities = 514/539 (95%), Gaps = 6/539 (1%)
Strand=Plus/Plus
Query 97 AGAGAGAGCTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA 156
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGAGAGAACTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA 118
Query 157 AAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCG 216
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 119 AAGCTGATCTTTCGAGTCAGTTGAAGGAATTTAAGGCGGAGCTTGCTCTTCTTCGTGTCG 178
Query 217 CTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA 276
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 179 CTAAGGTCACTGGAGGTGCTCCCAACAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA 238
Query 277 TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACA 298
Query 337 AGAACAAGAAGCTTTTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAGGA 396
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 299 AGAACAAGAAGCTTTTACCTCTCGATCTTCGTCCCAAGAAGACTAGAGCTATCAGGAGGA 358
Query 397 GACTCACTAAGCATCAGGCATCGTTGAAGACAGAGAGGGAGAAGAAGAAAGAAATGTACT 456
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 GACTCACCAAGCATCAGGCATCATTGAAGACAGAGAGGGAGAAGAAGAAAGAAATGTACT 418
Query 457 TTCCAATAAGGAAGTATGCTATTAAGGTGTAAGCTTTTATCTTGATCACATCAATTTTTG 516
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 TTCCGATAAGAAAGTATGCTATTAAGGTGTAAGCTTTTATCTTAATCACATCAATTTTTG 478
Query 517 TGTTT-GAATTTGAGCTC--GTGTGAGTTTTTGCTTTGTTTTCCTTCCTTGTTAAAGATA 573
||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 479 TGTTTTGAATTTGAGCTCTTGTGTGAGTTTTTGCTT-GTTTTCTTTCCTTGTTAAAGATA 537
Query 574 TTAAAAGCTCATCTTAATGAAAGATTGATTCAGAAAA-ACAGTATTGTTATATTATTGG 631
|| ||| ||||||||||||||||||||| |||||||| | ||||||||||||| |||||
Sbjct 538 TTGAAATCTCATCTTAATGAAAGATTGAATCAGAAAATA-AGTATTGTTATATGATTGG 595
Score = 99.0 bits (53), Expect = 4e-20
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 13 TTAACTCTTAGCCGTCTTCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAA 71
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAGTCTTAGCCGTCATCTTCTTCATTTTTCTCTAGGGTTTCTAATCTCTTATAACAA 59
> Ahg485940 jgi|Araly1|485940|fgenesh2_kg.5__1932__AT3G55170.2
Length=525
Score = 492 bits (266), Expect = 1e-138
Identities = 353/395 (89%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 97 AGAGAGAGCTCGAAGACGCAATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAA 156
||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 34 AGAGAGAGCTCGAAGACGCCATGGCGAGAATCAAGGTTCATGAGTTGAGGGATAAATCAA 93
Query 157 AAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCG 216
|| | |||||||| ||| ||||| ||| | |||||||||||||||||||| ||||| |
Sbjct 94 AATCGGATCTTTCTACTCAATTGAAAGAACTAAAGGCAGAGCTTGCTCTCCTCCGTGTGG 153
Query 217 CTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGA 276
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 154 CTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCAAAGATCAAAGTGGTGAGGAAGTCGA 213
Query 277 TTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCT-TTGAGAGAGGCATAC 335
|||| || |||||||| ||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 214 TTGCGCAAGTGTTGACTGTGATCTCACAGAAACAAAAGTCTGCTCTT-AGAGAAGCATAC 272
Query 336 AAGAACAAGAAGCTT-TTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAG 394
|||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 273 AAGAACAAGAAG-TTGTTGCCACTCGATCTCCGTCCCAAGAAGACTAGAGCCATCAGAAG 331
Query 395 GAGACTCACTAAGCATCAGGCATCGTTGAAGACAGAGA-GGGAGAAGAAGAAAGAAATGT 453
||||||||||||||| ||||| ||| | |||||||| | | |||||||||||||||||||
Sbjct 332 GAGACTCACTAAGCACCAGGCGTCGCTAAAGACAGA-ACGAGAGAAGAAGAAAGAAATGT 390
Query 454 ACTTTCCAATAAGGAAGTATGCTATTAAGGTGTAA 488
|||||||||| || |||||||| || ||||| |||
Sbjct 391 ACTTTCCAATTAGAAAGTATGCCATCAAGGTTTAA 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5