BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39400.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1 1705 0.0
Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1 749 0.0
> Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1
Length=1169
Score = 1705 bits (923), Expect = 0.0
Identities = 1055/1115 (95%), Gaps = 23/1115 (2%)
Strand=Plus/Plus
Query 1 AAATCAGACAACAACTAACTCTTTCCCTCTCGCTCTCCGCATAAATCCCTTTG-AAACAA 59
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1 AAATCAGACAACAACTAACTCTTTCCCTCTCGCTCTCCTCATAAATCCCTCTGAAAACAA 60
Query 60 GATCATATCTTAACTTTGTATAAAAACAGGACaaaaaaaCAGAGGATCATGGTTATGTAT 119
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GAAAATATCTTAACTTTGTATAAAAACAGAACAAAAAAACAGAGGATCATGGTTATGTAT 120
Query 120 GAAGAGGATTTTGTGTTGAACTCACGAGGCATGAAGTTGTTCACTTGTGTATGGAAACCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGAGGATTTTGTGTTGAACTCACGAGGCATGAAGTTGTTCACTTGTGTATGGAAACCA 180
Query 180 GTGAAGCAAGAACCAAAGGCATTGCTCTTCCTCTGCCATGGCTACGCTATGGAGTCCAGC 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAAGCAAGACCCAAAGGCATTGCTCTTCCTCTGCCATGGCTACGCTATGGAGTCCAGC 240
Query 240 ATCACCATG-A-A---CAG-C----G--CAGCCACGAGGTTAGCCAATGCCGGTTTTGCC 287
||||||||| | | ||| | | ||||||||||| ||||||| |||||||||||
Sbjct 241 ATCACCATGAACAGTTCAGTCAGATGCACAGCCACGAGGCTAGCCAAGGCCGGTTTTGCG 300
Query 288 GTATATGGAATGGACTATGAAGGACATGGAAAATCTGAGGGTCTAAATGGTTACATCAGT 347
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GTCTATGGAATGGACTATGAAGGACATGGAAAATCCGAGGGTCTAAATGGTTACATCAGT 360
Query 348 AACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATTCTACAATTTGTGAGAGGGAA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATTCTACAATTTGTGAGAAGGAA 420
Query 408 GAGAACAAGGGGAAGATGAGGTTCCTACTTGGAGAATCCATGGGAGGAGCAGTTGTGTTG 467
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GAGAACAAGGGGAAGATGAGGTTCCTACTCGGAGAATCCATGGGAGGAGCAGTTGTGTTG 480
Query 468 CTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTAGCACCCATGTGT 527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTCGCACCCATGTGT 540
Query 528 AAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTA-TCAAGTTAGC 586
||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||
Sbjct 541 AAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTATTAAACTT-GC 599
Query 587 CAAGTTTATTCCAACGTGGAAAATAGTTCCAGGAAATGATATTATTGACATTGCAATTAA 646
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAGTTTATTCCGACGTGGAAAATAGTTCCAGGAAATGATATTATTGACATTGCAATTAA 659
Query 647 AGAACCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAAGGCCGGCCTCG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAACCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAAGGCCGGCCTCG 719
Query 707 CCTCAACACCGCCTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAAGAATCTTCACCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 CCTCAACACCGCCTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAAGAATCTTGACCA 779
Query 767 GGTATCAATTCCTTTCATTGTTCTTCACGGAGAAGATGATAAAGTGACGGATAAAAGCAT 826
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GGTATCAATTCCTTTCATTGTTCTTCACGGAGAAGATGATAAAGTGACGGACAAAAGCAT 839
Query 827 AAGCAAAATGTTATACGAAGTGGCTTCAAGCTCGGACAAGACATTCAAGCTGTACCCCAA 886
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 840 AAGCAAAATGTTATACGAAGTGGCTTCAACCTCGGACAAGACATTCAAGTTGTACCCCAA 899
Query 887 AATGTGGCATGCTTTGTTGTATGGGGAAACTAATGAAAATTCAGAAATTGTGTTTGGTGA 946
|||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 900 AATGTGGCATGCGTTGTTATATGGAGAAACTTCTGAAAATTCAGAAATTGTGTTTGGTGA 959
Query 947 TATCATAAACTGGTTGGAAGATAGAGCCACAGATTCGAACGGAGGGTTAGAGAGTCAGCT 1006
||||||||||||| |||| ||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 960 TATCATAAACTGGCTGGAGGATAGAGCCACCGATTCGAACAGAGCGTTAGAGAGTCAGCT 1019
Query 1007 AAAACATAAGCATGATGGATTCTTGAAGCATAAATAAGTGAACGATAGCATTGTTTATGT 1066
||||||||||||||||||||||||||||||||||||||||||||||| || || | | |
Sbjct 1020 AAAACATAAGCATGATGGATTCTTGAAGCATAAATAAGTGAACGATA-CA--GTCTCT-T 1075
Query 1067 ACCCttttttttGCAGCGGTTTATGTACTTGTGTA 1101
|||||| ||||| |||| ||||||||||||
Sbjct 1076 ----TTTTTTGGGCAGCCGTTTGTGTACTTGTGTA 1106
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1138 ATACTTTACCTACGAAGTTACTTGTGAAATAAGTAGTGAAGTATTTTATATTTACGG 1194
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1113 ATACTTTACCTACGAAGTTACTTGTGAAATAAGTAGTGAAGTATATTATATTTACGG 1169
> Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1
Length=939
Score = 749 bits (405), Expect = 0.0
Identities = 720/870 (83%), Gaps = 29/870 (3%)
Strand=Plus/Plus
Query 108 ATGGTTATGTATGAAGAGGATTTTGTGTT-GAACTCACGAGGCA-TGAAGTTGTTCACTT 165
||||||| ||| ||||||||| ||| || ||||||||||| | | || || ||||| |
Sbjct 1 ATGGTTACGTACAAAGAGGATTATGT-TTCAAACTCACGAGGTATTCAACTT-TTCACGT 58
Query 166 GTGT-ATGGAAACCAG-TGA--AGCAAGAACCAAAGGCATTGCTCTTCCTCTGCCATGGC 221
|| | ||||||||||| || |||||||||||||||| || |||| ||||| ||||||
Sbjct 59 GT-TCATGGAAACCAGAGGAGCAGCAAGAACCAAAGGCTTTAATCTTTCTCTGTCATGGC 117
Query 222 TACGCTATGGAGTCCAGCATCACCATGAACAGCGCAGCCACGAGGTTAGCCAATGCCGGT 281
||||| ||||| || ||||||||||||| |||| | || | |||||| || ||||| ||
Sbjct 118 TACGCCATGGAATCAAGCATCACCATGAGCAGCACTGCAATGAGGTTGGCTAATGCGGGC 177
Query 282 TTTGCCGTATATGGAATGGACTATGAAGGACATGGAAAATCTGAGGG-TCTAAATGGTTA 340
|| || || |||||||||||||||||||| ||||| ||||| | ||| | ||||||||||
Sbjct 178 TTCGCGGTCTATGGAATGGACTATGAAGGGCATGGTAAATCCGGGGGAT-TAAATGGTTA 236
Query 341 CATCAGTAACTTTGATGATCTCGTTGATGATGTCTCTAATCATTA-TTCTACAATTTGTG 399
| ||| || ||||||||||| ||| |||| |||| | |||||| | || |||||||||
Sbjct 237 CGTCAAAAAATTTGATGATCTTGTTCATGACGTCTATTCTCATTACTCCT-CAATTTGTG 295
Query 400 AGAGGGAAGAGAACAAGGGGAAGATGAGGTTCCTACTTGGAGAATCCATGGGAGGAGCAG 459
|||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 296 CGAGGGAAGAGAATAAGGGGAAGATGAGGTTTCTAATGGGAGAATCCATGGGAGGAGCAG 355
Query 460 TTGTGTTGCTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTAGCAC 519
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 TTGTGTTGCTCTTAGAGAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTCGCAC 415
Query 520 CCATGTGTAAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTATCA 579
||||||||||||||||||| || ||||||||||||||| | ||||||||| | || | ||
Sbjct 416 CCATGTGTAAGTTAGCAGAAGACATAAAGCCACATCCAATGGTGATCTCATTTCTCA-CA 474
Query 580 A-GTTAGC-CAAGTTTATTCCAACGTGGAAAATAGTTCC-AGGAAATGATATTATTGACA 636
| | || | | |||||||||||| ||||| |||||||| || || ||||| ||||||
Sbjct 475 AAGCTAACTCG-GTTTATTCCAACTTGGAAGATAGTTCCTAGCAAC-GATATCATTGACG 532
Query 637 TTGCAATTAAAGAA-CCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAA 695
| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||||||| ||
Sbjct 533 TAGCATTTAAAGAATCC-CACATAAGAAAACAGGTAAGGGACAATGAGTATTGCTACAAG 591
Query 696 GGCCGGCCTCGCCTCAACACCGC-CTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAA 754
|||||||||||| | || ||||| | | |||||||| |||||||||| |||||||||||
Sbjct 592 GGCCGGCCTCGCTTGAAAACCGCTC-ATCAACTCTTACTGGTTAGCTTGGATCTTGAGAA 650
Query 755 GAATCTTCACCAGGTATCAATTCC-TTTCATTGTTCTTCACGGAGAAGATGATAAAGTGA 813
||||||| | |||||||| || || ||| ||||| |||||||| |||||||||||||| |
Sbjct 651 GAATCTTGATCAGGTATCGATGCCATTT-ATTGTCCTTCACGGTGAAGATGATAAAGTTA 709
Query 814 CGGATAAAAGCATAAGCAAAATGTTATACGAAGTGGCTTCAAGCTCGGACAAGACATTCA 873
| || |||| | |||||||| | ||||||| ||||||||||| ||||||||||| ||||
Sbjct 710 CTGACAAAAACGTAAGCAAACTACTATACGAGGTGGCTTCAAGTTCGGACAAGACTTTCA 769
Query 874 AGCTGTACCCCAAAATGTGGCATG--CTTTGTTGTATGGGGAAACTAATGAAAATTCAGA 931
|| | ||||| || |||||||||| |||| | || || ||| || ||| |||| ||
Sbjct 770 AGTTATACCCGAACATGTGGCATGGGCTTT-TA-TACGGAGAATCTCCTGAGAATTTGGA 827
Query 932 AATTGTGTTTGGTGATATCATAAACTGGTT 961
|||||||| |||||||||||| |||||
Sbjct 828 GATTGTGTTCAGTGATATCATAAGTTGGTT 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5