BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39410.2
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901868 jgi|Araly1|901868|Al_scaffold_0004_2518 1496 0.0
Ahg918717 jgi|Araly1|918717|Al_scaffold_0380_3 837 0.0
Ahg482961 jgi|Araly1|482961|fgenesh2_kg.4__2021__AT2G39420.1 828 0.0
Ahg333308 jgi|Araly1|333308|fgenesh1_pm.C_scaffold_380000001 357 9e-98
> Ahg901868 jgi|Araly1|901868|Al_scaffold_0004_2518
Length=954
Score = 1496 bits (810), Expect = 0.0
Identities = 907/955 (95%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 99 ATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 158
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 60
Query 159 TTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAGCCAAGGGCTTTAGTTTT 217
|||||||||||||| ||||||||| ||||| |||| || |||||||||||||||||||||
Sbjct 61 TTTAAGTTGTTCACGTGCAGATGGATACCAGCAAACCA-AGAGCCAAGGGCTTTAGTTTT 119
Query 218 CCTTTGCCATGGATATGGCATGGAATGCAGTATCACCATGAATAGTACTGCTAGAAGGCT 277
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
Sbjct 120 CCTTTGCCATGGATATGGCATGGAATGCAGCGTCACCATGAATAGTACTGCAAGGAGGAT 179
Query 278 TGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGGACATGGAAAATCTGATGG 337
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CGTGAAGGCAGGATTTGCAGTATATGGAATGGATTATGAAGGACATGGCAAATCTGATGG 239
Query 338 GCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGATGTCTCAACTCACTACAC 397
|||||| ||||||||| |||||||||| | || |||||||||||||| |||||||||||
Sbjct 240 GCTTAGTGCTTATATCCCAAACTTTGACCACCTCGTTGATGATGTCTCCACTCACTACAC 299
Query 398 AGCTATTTGCGAGAGGGAAGAAAACAAGTGGAAGATGAGGTTTATGTTAGGAGAGTCAAT 457
| ||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 300 AACTATTTGCGAGAGAGAAGAGAACAAATGGAAGATGAGGTTTCTGTTAGGAGAGTCAAT 359
Query 458 GGGAGGAGCAGTTGTTTTGTTGCTAGGCAGGAAGAACCCTGACTTTTGGGATGGAGCTAT 517
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 GGGAGGAGCAGTGGTTTTGTTGCTACGCAGGAAGAACCCTGACTTTTGGGATGGAGCTAT 419
Query 518 CTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTC 479
Query 578 GATATTAACAAAGCTTATTTCGATTATACCCAAATGGAAAATCATTCCTAGTCAAGATAT 637
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATATTAACAAAGCTTATCTCCATTATACCCAAATGGAAAATCATTCCTAGTCAAGATAT 539
Query 638 CATCGAGATTTCATATAAAGAGCCAGAAATTAGAAAACAGGTTAGAGAAAATCCTTTATG 697
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 540 CATCGAGATTTCATATAAAGAGCCAGAAATAAGAAAACAGGTTAGAGAAAATCCGTTATG 599
Query 698 CTCGAAAGGACGACCACGCTTGAAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTT 757
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCCAAAGGACGACCACGCTTGAAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTT 659
Query 758 GGAGAAGAGACTTCAAGAGGTTTCATTGCCGTTTTTGGTATTACACGGAGATGATGATAA 817
||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 660 GGAGAAGTCACTTAAAGAGGTTTCATTGCCGTTTATGGTATTACACGGAGGTGATGATAA 719
Query 818 AGTAACAGATAAAGCAGTGAGCCAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGAC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTAACAGATAAAGCAGTGAGCCAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGAC 779
Query 878 CTTAAAGTTGTACCCTGGGATGTGGCACGGTTTGCTCACCGGCGAGACACCAGAGAACAT 937
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 CTTAAAGTTGTACCCTGGGATGTGGCACGGTTTGCTCAACGGCGAGACACCAGAGAACAT 839
Query 938 CGAAATTGTCTTTGCCGACGTCATCAGTTGGTTGGAAAAAAGAAGTGATTATGGAAATGA 997
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 840 TGAAATTGTCTTTGCCGACGTCATCGGATGGTTGGAAAAAAGAAGTGATTATGGAAATGA 899
Query 998 TAGGTTTGAGTCAGAGCTTAAACAGCGTAATGATCGTTTAAATTTCAAGAAATAG 1052
|||||||||||| |||||||||||| ||||||| |||| ||||||||| |||||
Sbjct 900 TAGGTTTGAGTCGGAGCTTAAACAGAATAATGATGGTTTTAATTTCAAGGAATAG 954
> Ahg918717 jgi|Araly1|918717|Al_scaffold_0380_3
Length=513
Score = 837 bits (453), Expect = 0.0
Identities = 493/513 (96%), Gaps = 0/513 (0%)
Strand=Plus/Plus
Query 540 ATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTCGATATTAACAAAGCTTATTTCG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATCGCAGAAGAAATGAAGCCAAGTCCTTTTGTTATTTCGATATTAACAAAGCTTATCTCC 60
Query 600 ATTATACCCAAATGGAAAATCATTCCTAGTCAAGATATCATCGAGATTTCATATAAAGAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTATACCCAAATGGAAAATCATTCCTAGTCAAGATATCATCGAGATTTCATATAAAGAG 120
Query 660 CCAGAAATTAGAAAACAGGTTAGAGAAAATCCTTTATGCTCGAAAGGACGACCACGCTTG 719
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 CCAGAAATAAGAAAACAGGTTAGAGAAAATCCGTTATGCTCCAAAGGACGACCACGCTTG 180
Query 720 AAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTTGGAGAAGAGACTTCAAGAGGTT 779
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 181 AAAACTGCGTATGAGCTCTTAAGGATCAGCAACGACTTGGAGAAGTCACTTAAAGAGGTT 240
Query 780 TCATTGCCGTTTTTGGTATTACACGGAGATGATGATAAAGTAACAGATAAAGCAGTGAGC 839
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 TCATTGCCGTTTATGGTATTACACGGAGGTGATGATAAAGTAACAGATAAAGCAGTGAGC 300
Query 840 CAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGACCTTAAAGTTGTACCCTGGGATG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGAACTGTACAAGGTTGCGTTGAGCGCTGACAAGACCTTAAAGTTGTACCCTGGGATG 360
Query 900 TGGCACGGTTTGCTCACCGGCGAGACACCAGAGAACATCGAAATTGTCTTTGCCGACGTC 959
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TGGCACGGTTTGCTCAACGGCGAGACACCAGAGAACATTGAAATTGTCTTTGCCGACGTC 420
Query 960 ATCAGTTGGTTGGAAAAAAGAAGTGATTATGGAAATGATAGGTTTGAGTCAGAGCTTAAA 1019
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 ATCGGATGGTTGGAAAAAAGAAGTGATTATGGAAATGATAGGTTTGAGTCGGAGCTTAAA 480
Query 1020 CAGCGTAATGATCGTTTAAATTTCAAGAAATAG 1052
||| ||||||| |||| ||||||||| |||||
Sbjct 481 CAGAATAATGATGGTTTTAATTTCAAGGAATAG 513
> Ahg482961 jgi|Araly1|482961|fgenesh2_kg.4__2021__AT2G39420.1
Length=1168
Score = 828 bits (448), Expect = 0.0
Identities = 794/957 (83%), Gaps = 39/957 (4%)
Strand=Plus/Plus
Query 83 AATCTCTT-GTGACGTAATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCA 141
|||||||| || | | |||||| | |||||||||| |||||||||| |||||||||||||
Sbjct 35 AATCTCTTCGT-AAG-AATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCA 92
Query 142 TAAAGAACACTCGAGGATTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAG 200
| ||||||||||||||| | || ||||||| || | |||| ||||| |||| || ||||
Sbjct 93 TCAAGAACACTCGAGGAATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCA-AGAG 151
Query 201 CCAAGGGCTTTAGTTTTCCTTTGCCATGGATATGGC-ATGGAATGCAGTATCACCATGAA 259
|||| ||||||||| ||| |||||||||| ||| || |||||||| || |||||||||||
Sbjct 152 CCAAAGGCTTTAGTCTTCATTTGCCATGGTTAT-GCAATGGAATGTAGCATCACCATGAA 210
Query 260 TAGTACTGCTAGAAGGCTTGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGG 319
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 211 CAGTACTGCAAGGAGGCTTGTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGG 270
Query 320 ACATGGAAAATCTGATGGGCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGA 379
|||||||||||||||||||||||| |||||| || |||||||||| | ||| ||||||||
Sbjct 271 ACATGGAAAATCTGATGGGCTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGA 330
Query 380 TGTCTCAACTCACTACACA-GCTATTTGCGAGAGGGAAGAAAACAA-GTGGAAGATGAGG 437
|||||| |||||||||||| || |||||||||| ||||| || || | |||||||||||
Sbjct 331 TGTCTCTACTCACTACACAAGC-ATTTGCGAGAAAGAAGAGAATAAAG-GGAAGATGAGG 388
Query 438 TT-TATGTTAGGAGAGTCAATGGGAGGAGCAGTTG-TTTTGTTGCTAGGCAGGAAGAACC 495
|| | |||||||||| ||||||||||||||||| | |||||||| || ||| ||||| |
Sbjct 389 TTCT-TGTTAGGAGAATCAATGGGAGGAGCAGT-GCTTTTGTTGTTACACAGAAAGAAGC 446
Query 496 CTGACTTTTGGGATGGAGCTATCTTGGTCGCTCCAATGTGTAAGATCGCAGAAGAAATGA 555
|| | ||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||
Sbjct 447 CTCAGTTTTGGGATGGGGCTGTCTTGGTTGCTCCAATGTGTAAGATTGCTGAAGAAATGA 506
Query 556 AGCCAAGTCCTTTTGTTATTTCGATATTAAC-AAAGCTTATTTCG-ATT-ATACCCAAAT 612
| ||||| ||||| || ||||||||||| | ||| |||| || | | ||||| | |
Sbjct 507 AACCAAGCCCTTTGGTAATTTCGATATTGTCCAAA-CTTAG--CGGAGTGATACCTACGT 563
Query 613 GGAAAATCATTCCTAGTCAAGATATCATCGAGATTTCATATAAAG-AGCCAGAAATTAGA 671
||| |||||| ||| | ||||||||||| |||| | | | ||| | |||||||||| ||
Sbjct 564 GGAGAATCATCCCTGGCCAAGATATCATTGAGACTGCTTTTAA-GCAGCCAGAAATCAGG 622
Query 672 AAACAGGTTAGAGAAAATCCTTTA-TGCT-CGAAAGGACGACCACGCTTGAAAACTGCGT 729
||||||||||| |||||||||| | |||| | || ||||| ||||| ||||| ||||| |
Sbjct 623 AAACAGGTTAGGGAAAATCCTT-ACTGCTAC-AAGGGACGTCCACGTTTGAAGACTGCCT 680
Query 730 ATGAGCTCTTAAGGATCAGCAACGA-CTTGGAGAAGAGACTTCAA-GAGGTTTCATTGCC 787
||||||| || ||| | |||| ||| || | ||||||||||| || ||||||||||| ||
Sbjct 681 ATGAGCTATTGAGGGTTAGCACCGATCTCG-AGAAGAGACTT-AATGAGGTTTCATTACC 738
Query 788 GTTTTTGGTATTACACGGAGATGATGATAAAGTAACAGATAAAGCAGTGAGCCAAGAACT 847
||| || | || |||||||| || |||||||| || || ||||||||||||| | | ||
Sbjct 739 GTTCATGCTTTTGCACGGAGAAGACGATAAAGTCACCGACAAAGCAGTGAGCCGACAGCT 798
Query 848 GTACAAGGTTGCGTTGAGCGCTGACAAGACCTTAAAGTTGTACCCTGGGATGTGGCACGG 907
|| |||||||| ||| || |||||||| || ||||||||||||||||||||||| ||
Sbjct 799 CTATGAGGTTGCGACGAGTGCAGACAAGACTTTCAAGTTGTACCCTGGGATGTGGCATGG 858
Query 908 TTTGCTC-ACCGGCGAGACACCAGAGAACATCGAAATTGTCTTTGCCGACGTCATCAGTT 966
||| ||| || ||||||||||||||||||||||| ||||| ||||| ||| | || |||
Sbjct 859 TTTACTCTAC-GGCGAGACACCAGAGAACATCGAGATTGTTTTTGCTGACATTATTGGTT 917
Query 967 GGTTGGAAAAAAGAAGTGAT-T-ATGGAAATGATAGG-TTTGAGTCAGAGCTTAAAC 1020
||||||| || | |||| | | ||||| ||| ||| ||||| || ||||||||||
Sbjct 918 GGTTGGACAAGA-AAGTT-TCTGATGGACATGG-AGGCTTTGAATCCGAGCTTAAAC 971
> Ahg333308 jgi|Araly1|333308|fgenesh1_pm.C_scaffold_380000001
Length=345
Score = 357 bits (193), Expect = 9e-98
Identities = 274/313 (88%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 99 ATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 158
||||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 60
Query 159 TTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAGCCAAGGGCTTTAGTTTT 217
| || ||||||| || | |||| ||||| |||| || |||||||| ||||||||| ||
Sbjct 61 ATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCA-AGAGCCAAAGGCTTTAGTCTT 119
Query 218 CCTTTGCCATGGATATGGC-ATGGAATGCAGTATCACCATGAATAGTACTGCTAGAAGGC 276
| |||||||||| ||| || |||||||| || ||||||||||| |||||||| || ||||
Sbjct 120 CATTTGCCATGGTTAT-GCAATGGAATGTAGCATCACCATGAACAGTACTGCAAGGAGGC 178
Query 277 TTGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGGACATGGAAAATCTGATG 336
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 179 TTGTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGACATGGAAAATCTGATG 238
Query 337 GGCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGATGTCTCAACTCACTACA 396
||||||| |||||| || |||||||||| | ||| |||||||||||||| ||||||||||
Sbjct 239 GGCTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACA 298
Query 397 CA-GCTATTTGCG 408
|| || |||||||
Sbjct 299 CAAGC-ATTTGCG 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5